RNA–Protein interactions for RNA: ENST00000306726.6

PTPN9-201, Transcript of protein tyrosine phosphatase, non-receptor type 9, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene PTPN9, Length 3,862 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9-201ENST00000306726 RBM42Q9BTD8 480 aaKnown RBP18.3■□□□□ 0.52
PTPN9-201ENST00000306726 NOB1Q9ULX3 412 aaKnown RBP18.3■□□□□ 0.52
PTPN9-201ENST00000306726 RIPK4P57078 832 aa18.29■□□□□ 0.52
PTPN9-201ENST00000306726 PTPRUQ92729 1446 aa18.29■□□□□ 0.52
PTPN9-201ENST00000306726 PRAM1Q96QH2 718 aa18.29■□□□□ 0.52
PTPN9-201ENST00000306726 XRCC6P12956 609 aaKnown RBP eCLIP18.29■□□□□ 0.52
PTPN9-201ENST00000306726 HSPA2P54652 639 aa18.29■□□□□ 0.52
PTPN9-201ENST00000306726 RUNDC1Q96C34 613 aa18.29■□□□□ 0.52
PTPN9-201ENST00000306726 ZNF428Q96B54 188 aa18.28■□□□□ 0.52
PTPN9-201ENST00000306726 ATAD2Q6PL18 1390 aa18.28■□□□□ 0.52
PTPN9-201ENST00000306726 MCM4P33991 863 aa18.28■□□□□ 0.52
PTPN9-201ENST00000306726 BCL11BQ9C0K0 894 aaPredicted RBP18.26■□□□□ 0.51
PTPN9-201ENST00000306726 RSPH6AQ9H0K4 717 aa18.26■□□□□ 0.51
PTPN9-201ENST00000306726 RBM10P98175 930 aaKnown RBP18.25■□□□□ 0.51
PTPN9-201ENST00000306726 ROBO2Q9HCK4 1378 aa18.25■□□□□ 0.51
PTPN9-201ENST00000306726 HSP90AA2PQ14568 343 aaPredicted RBP18.25■□□□□ 0.51
PTPN9-201ENST00000306726 SSH1Q8WYL5 1049 aa18.25■□□□□ 0.51
PTPN9-201ENST00000306726 TMEM57Q8N5G2 664 aa18.24■□□□□ 0.51
PTPN9-201ENST00000306726 DTNBO60941 627 aa18.24■□□□□ 0.51
PTPN9-201ENST00000306726 NECTIN2Q92692 538 aa18.24■□□□□ 0.51
PTPN9-201ENST00000306726 DDX49Q9Y6V7 483 aaKnown RBP18.24■□□□□ 0.51
PTPN9-201ENST00000306726 CDC42BPGQ6DT37 1551 aa18.23■□□□□ 0.51
PTPN9-201ENST00000306726 PDE3AQ14432 1141 aa18.23■□□□□ 0.51
PTPN9-201ENST00000306726 CHMP5Q9NZZ3 219 aa18.23■□□□□ 0.51
PTPN9-201ENST00000306726 FAM43AQ8N2R8 423 aa18.23■□□□□ 0.51
PTPN9-201ENST00000306726 DCCP43146 1447 aa18.22■□□□□ 0.51
PTPN9-201ENST00000306726 ADGRL3Q9HAR2 1447 aa18.22■□□□□ 0.51
PTPN9-201ENST00000306726 ANKARQ7Z5J8 1434 aa18.22■□□□□ 0.51
PTPN9-201ENST00000306726 SLC4A10Q6U841 1118 aa18.22■□□□□ 0.51
PTPN9-201ENST00000306726 TULP4Q9NRJ4 1543 aa18.21■□□□□ 0.51
PTPN9-201ENST00000306726 RNF214Q8ND24 703 aa18.21■□□□□ 0.51
PTPN9-201ENST00000306726 CHAMP1Q96JM3 812 aa18.21■□□□□ 0.51
PTPN9-201ENST00000306726 GLIPR1L2Q4G1C9 344 aa18.2■□□□□ 0.5
PTPN9-201ENST00000306726 TRIM27P14373 513 aa18.2■□□□□ 0.5
PTPN9-201ENST00000306726 TAOK2Q9UL54 1235 aa18.2■□□□□ 0.5
PTPN9-201ENST00000306726 WASLO00401 505 aaPredicted RBP18.19■□□□□ 0.5
PTPN9-201ENST00000306726 DCTN1Q14203 1278 aa18.19■□□□□ 0.5
PTPN9-201ENST00000306726 MVPQ14764 893 aaKnown RBP18.19■□□□□ 0.5
PTPN9-201ENST00000306726 DNTTIP2Q5QJE6 756 aaKnown RBP18.19■□□□□ 0.5
PTPN9-201ENST00000306726 MCTP1Q6DN14 999 aa18.19■□□□□ 0.5
PTPN9-201ENST00000306726 USP19O94966 1318 aa18.18■□□□□ 0.5
PTPN9-201ENST00000306726 PTMAP06454 111 aaKnown RBP18.18■□□□□ 0.5
PTPN9-201ENST00000306726 GOLGA6L22H0YM25 854 aa18.18■□□□□ 0.5
PTPN9-201ENST00000306726 PROSER2Q86WR7 435 aaPredicted RBP18.18■□□□□ 0.5
PTPN9-201ENST00000306726 TBC1D32Q96NH3 1257 aa18.18■□□□□ 0.5
PTPN9-201ENST00000306726 ITSN1Q15811 1721 aa18.17■□□□□ 0.5
PTPN9-201ENST00000306726 NSD3Q9BZ95 1437 aa18.17■□□□□ 0.5
PTPN9-201ENST00000306726 WAPLQ7Z5K2 1190 aa18.17■□□□□ 0.5
PTPN9-201ENST00000306726 FAM13BQ9NYF5 915 aa18.16■□□□□ 0.5
PTPN9-201ENST00000306726 SIPA1L2Q9P2F8 1722 aaPredicted RBP18.15■□□□□ 0.5
PTPN9-201ENST00000306726 CDK19Q9BWU1 502 aa18.15■□□□□ 0.5
PTPN9-201ENST00000306726 GRPEL1Q9HAV7 217 aa18.15■□□□□ 0.5
PTPN9-201ENST00000306726 ATP7BP35670 1465 aa18.15■□□□□ 0.5
PTPN9-201ENST00000306726 SSFA2P28290 1259 aa18.14■□□□□ 0.49
PTPN9-201ENST00000306726 FMN2Q9NZ56 1722 aa18.14■□□□□ 0.49
PTPN9-201ENST00000306726 CAVIN1Q6NZI2 390 aaKnown RBP18.14■□□□□ 0.49
PTPN9-201ENST00000306726 GBP4Q96PP9 640 aa18.14■□□□□ 0.49
PTPN9-201ENST00000306726 TERF2IPQ9NYB0 399 aa18.13■□□□□ 0.49
PTPN9-201ENST00000306726 MSNP26038 577 aaKnown RBP18.13■□□□□ 0.49
PTPN9-201ENST00000306726 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP18.13■□□□□ 0.49
PTPN9-201ENST00000306726 PRKAR2BP31323 418 aa18.13■□□□□ 0.49
PTPN9-201ENST00000306726 TNPO1Q92973 898 aaKnown RBP18.13■□□□□ 0.49
PTPN9-201ENST00000306726 MSH6P52701 1360 aa18.13■□□□□ 0.49
PTPN9-201ENST00000306726 C14orf37Q86TY3 774 aa18.12■□□□□ 0.49
PTPN9-201ENST00000306726 NALCNQ8IZF0 1738 aa18.12■□□□□ 0.49
PTPN9-201ENST00000306726 C19orf44Q9H6X5 657 aa18.12■□□□□ 0.49
PTPN9-201ENST00000306726 SMARCA5O60264 1052 aaPredicted RBP18.12■□□□□ 0.49
PTPN9-201ENST00000306726 DDX19BQ9UMR2 479 aa18.12■□□□□ 0.49
PTPN9-201ENST00000306726 TSHZ3Q63HK5 1081 aa18.12■□□□□ 0.49
PTPN9-201ENST00000306726 ATF7IPQ6VMQ6 1270 aa18.12■□□□□ 0.49
PTPN9-201ENST00000306726 MYOM1P52179 1685 aa18.11■□□□□ 0.49
PTPN9-201ENST00000306726 HDGFL2Q7Z4V5 671 aaPredicted RBP18.11■□□□□ 0.49
PTPN9-201ENST00000306726 ANKRD36BQ8N2N9 1353 aa18.1■□□□□ 0.49
PTPN9-201ENST00000306726 IPO8O15397 1037 aaKnown RBP18.1■□□□□ 0.49
PTPN9-201ENST00000306726 CCDC61Q9Y6R9 512 aa18.1■□□□□ 0.49
PTPN9-201ENST00000306726 TOPAZ1Q8N9V7 1692 aa18.1■□□□□ 0.49
PTPN9-201ENST00000306726 MIS18AQ9NYP9 233 aa18.1■□□□□ 0.49
PTPN9-201ENST00000306726 TMEM94Q12767 1356 aa18.1■□□□□ 0.49
PTPN9-201ENST00000306726 C16orf71Q8IYS4 520 aaPredicted RBP18.1■□□□□ 0.49
PTPN9-201ENST00000306726 LRRC7Q96NW7 1537 aa18.1■□□□□ 0.49
PTPN9-201ENST00000306726 CADPS2Q86UW7 1296 aa18.09■□□□□ 0.49
PTPN9-201ENST00000306726 IQSEC2Q5JU85 1478 aa18.09■□□□□ 0.49
PTPN9-201ENST00000306726 ESPNB1AK53 854 aa18.09■□□□□ 0.49
PTPN9-201ENST00000306726 TMPOP42166 694 aaKnown RBP18.09■□□□□ 0.49
PTPN9-201ENST00000306726 FAM83GA6ND36 823 aa18.09■□□□□ 0.49
PTPN9-201ENST00000306726 R3HCC1Q9Y3T6 440 aaKnown RBP18.09■□□□□ 0.49
PTPN9-201ENST00000306726 NPC1L1Q9UHC9 1359 aa18.09■□□□□ 0.49
PTPN9-201ENST00000306726 STRCP1A6NGW2 1772 aa18.08■□□□□ 0.49
PTPN9-201ENST00000306726 USP32Q8NFA0 1604 aa18.08■□□□□ 0.49
PTPN9-201ENST00000306726 LARP6Q9BRS8 491 aaKnown RBP18.08■□□□□ 0.48
PTPN9-201ENST00000306726 ZNF692Q9BU19 519 aaPredicted RBP18.08■□□□□ 0.48
PTPN9-201ENST00000306726 ATF3P18847 181 aa18.08■□□□□ 0.48
PTPN9-201ENST00000306726 CALD1Q05682 793 aaKnown RBP18.08■□□□□ 0.48
PTPN9-201ENST00000306726 NUDT16Q96DE0 195 aaKnown RBP18.08■□□□□ 0.48
PTPN9-201ENST00000306726 ZNF521Q96K83 1311 aa18.07■□□□□ 0.48
PTPN9-201ENST00000306726 NSD2O96028 1365 aa18.07■□□□□ 0.48
PTPN9-201ENST00000306726 KIF1AQ12756 1690 aa18.07■□□□□ 0.48
PTPN9-201ENST00000306726 DIAPH1O60610 1272 aaKnown RBP18.07■□□□□ 0.48
PTPN9-201ENST00000306726 PRPF40AO75400 957 aaKnown RBP18.07■□□□□ 0.48
PTPN9-201ENST00000306726 BLMP54132 1417 aaPredicted RBP18.06■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms