RNA–Protein interactions for RNA: ENST00000304636.7

COL3A1-201, Transcript of collagen type III alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL3A1, Length 5,543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-201ENST00000304636 TMPOP42166 694 aaKnown RBP15.25■□□□□ 0.03
COL3A1-201ENST00000304636 DUSP27Q5VZP5 1158 aa15.25■□□□□ 0.03
COL3A1-201ENST00000304636 G3V3G9 751 aa15.24■□□□□ 0.03
COL3A1-201ENST00000304636 PIP4K2AP48426 406 aaPredicted RBP15.24■□□□□ 0.03
COL3A1-201ENST00000304636 DCAF8Q5TAQ9 597 aa15.24■□□□□ 0.03
COL3A1-201ENST00000304636 CFAP45Q9UL16 551 aa15.24■□□□□ 0.03
COL3A1-201ENST00000304636 DNAJC2Q99543 621 aaKnown RBP15.24■□□□□ 0.03
COL3A1-201ENST00000304636 PCF11O94913 1555 aaKnown RBP15.24■□□□□ 0.03
COL3A1-201ENST00000304636 CBFA2T2O43439 604 aa15.24■□□□□ 0.03
COL3A1-201ENST00000304636 MCM5P33992 734 aa15.24■□□□□ 0.03
COL3A1-201ENST00000304636 ALDH1L2Q3SY69 923 aa15.24■□□□□ 0.03
COL3A1-201ENST00000304636 ME1P48163 572 aa15.24■□□□□ 0.03
COL3A1-201ENST00000304636 PSME1Q06323 249 aa15.24■□□□□ 0.03
COL3A1-201ENST00000304636 TTLL5Q6EMB2 1281 aa15.24■□□□□ 0.03
COL3A1-201ENST00000304636 TRHP20396 242 aaPredicted RBP15.23■□□□□ 0.03
COL3A1-201ENST00000304636 MAP3K11Q16584 847 aa15.23■□□□□ 0.03
COL3A1-201ENST00000304636 CEP57L1Q8IYX8 460 aa15.23■□□□□ 0.03
COL3A1-201ENST00000304636 AFAP1Q8N556 730 aa15.23■□□□□ 0.03
COL3A1-201ENST00000304636 PRAM1Q96QH2 718 aa15.23■□□□□ 0.03
COL3A1-201ENST00000304636 ERLIN1O75477 346 aa15.23■□□□□ 0.03
COL3A1-201ENST00000304636 DCTN1Q14203 1278 aa15.23■□□□□ 0.03
COL3A1-201ENST00000304636 SART3Q15020 963 aaKnown RBP15.23■□□□□ 0.03
COL3A1-201ENST00000304636 DACH1Q9UI36 760 aa15.23■□□□□ 0.03
COL3A1-201ENST00000304636 TBC1D32Q96NH3 1257 aa15.23■□□□□ 0.03
COL3A1-201ENST00000304636 CCDC183Q5T5S1 534 aa15.22■□□□□ 0.03
COL3A1-201ENST00000304636 PLEKHH1Q9ULM0 1364 aa15.22■□□□□ 0.03
COL3A1-201ENST00000304636 PTPN23Q9H3S7 1636 aa15.22■□□□□ 0.03
COL3A1-201ENST00000304636 STK3Q13188 491 aa15.22■□□□□ 0.03
COL3A1-201ENST00000304636 BLOC1S2Q6QNY1 142 aa15.22■□□□□ 0.03
COL3A1-201ENST00000304636 NSD3Q9BZ95 1437 aa15.22■□□□□ 0.03
COL3A1-201ENST00000304636 SSFA2P28290 1259 aa15.22■□□□□ 0.03
COL3A1-201ENST00000304636 RDXP35241 583 aaKnown RBP15.22■□□□□ 0.03
COL3A1-201ENST00000304636 KIF2AO00139 706 aaPredicted RBP15.22■□□□□ 0.03
COL3A1-201ENST00000304636 EIF3JO75822 258 aaKnown RBP15.22■□□□□ 0.03
COL3A1-201ENST00000304636 RAPGEF4Q8WZA2 1011 aa15.22■□□□□ 0.03
COL3A1-201ENST00000304636 HDGFL1Q5TGJ6 251 aa15.21■□□□□ 0.03
COL3A1-201ENST00000304636 SULT6B1Q6IMI4 303 aa15.21■□□□□ 0.03
COL3A1-201ENST00000304636 XPCQ01831 940 aaPredicted RBP15.21■□□□□ 0.03
COL3A1-201ENST00000304636 VPS37DQ86XT2 251 aa15.21■□□□□ 0.03
COL3A1-201ENST00000304636 UBE2Q2Q8WVN8 375 aa15.21■□□□□ 0.03
COL3A1-201ENST00000304636 DHX29Q7Z478 1369 aaKnown RBP15.21■□□□□ 0.03
COL3A1-201ENST00000304636 GPRASP1Q5JY77 1395 aa15.21■□□□□ 0.03
COL3A1-201ENST00000304636 ABCC11Q96J66 1382 aa15.21■□□□□ 0.03
COL3A1-201ENST00000304636 JAKMIP1Q96N16 626 aaKnown RBP15.21■□□□□ 0.03
COL3A1-201ENST00000304636 NFE2L2Q16236 605 aa15.21■□□□□ 0.03
COL3A1-201ENST00000304636 NLRP6P59044 892 aa15.2■□□□□ 0.02
COL3A1-201ENST00000304636 SSH1Q8WYL5 1049 aa15.2■□□□□ 0.02
COL3A1-201ENST00000304636 EPRSP07814 1512 aaKnown RBP15.2■□□□□ 0.02
COL3A1-201ENST00000304636 PPFIBP1Q86W92 1011 aa15.2■□□□□ 0.02
COL3A1-201ENST00000304636 RPRD2Q5VT52 1461 aaKnown RBP15.2■□□□□ 0.02
COL3A1-201ENST00000304636 MAP4K4O95819 1239 aaPredicted RBP15.2■□□□□ 0.02
COL3A1-201ENST00000304636 CLCN1P35523 988 aa15.2■□□□□ 0.02
COL3A1-201ENST00000304636 AXDND1Q5T1B0 1012 aaPredicted RBP15.2■□□□□ 0.02
COL3A1-201ENST00000304636 CDK19Q9BWU1 502 aa15.2■□□□□ 0.02
COL3A1-201ENST00000304636 CALRP27797 417 aaKnown RBP15.19■□□□□ 0.02
COL3A1-201ENST00000304636 CABP1Q9NZU7 370 aa15.19■□□□□ 0.02
COL3A1-201ENST00000304636 UPF3BQ9BZI7 483 aaKnown RBP15.19■□□□□ 0.02
COL3A1-201ENST00000304636 ATAD2Q6PL18 1390 aa15.19■□□□□ 0.02
COL3A1-201ENST00000304636 KRT32Q14532 448 aa15.19■□□□□ 0.02
COL3A1-201ENST00000304636 TBC1D2BQ9UPU7 963 aa15.19■□□□□ 0.02
COL3A1-201ENST00000304636 ZNF692Q9BU19 519 aaPredicted RBP15.19■□□□□ 0.02
COL3A1-201ENST00000304636 MAGEC2Q9UBF1 373 aaPredicted RBP15.19■□□□□ 0.02
COL3A1-201ENST00000304636 OFD1O75665 1012 aa15.18■□□□□ 0.02
COL3A1-201ENST00000304636 FILIP1Q7Z7B0 1213 aa15.18■□□□□ 0.02
COL3A1-201ENST00000304636 RPGRIP1LQ68CZ1 1315 aa15.18■□□□□ 0.02
COL3A1-201ENST00000304636 SMTNL1A8MU46 457 aa15.18■□□□□ 0.02
COL3A1-201ENST00000304636 CWC27Q6UX04 472 aaKnown RBP15.18■□□□□ 0.02
COL3A1-201ENST00000304636 MYO6Q9UM54 1294 aa15.18■□□□□ 0.02
COL3A1-201ENST00000304636 KLHL40Q2TBA0 621 aa15.18■□□□□ 0.02
COL3A1-201ENST00000304636 BRPF1P55201 1214 aaPredicted RBP15.17■□□□□ 0.02
COL3A1-201ENST00000304636 PLEKHO1Q53GL0 409 aaPredicted RBP15.17■□□□□ 0.02
COL3A1-201ENST00000304636 EVA1CP58658 441 aa15.17■□□□□ 0.02
COL3A1-201ENST00000304636 UBXN4Q92575 508 aa15.17■□□□□ 0.02
COL3A1-201ENST00000304636 TXLNAP40222 546 aa15.17■□□□□ 0.02
COL3A1-201ENST00000304636 CBX1P83916 185 aa15.17■□□□□ 0.02
COL3A1-201ENST00000304636 BMP2KLQ5H9B9 411 aa15.17■□□□□ 0.02
COL3A1-201ENST00000304636 ZNHIT6Q9NWK9 470 aaKnown RBP15.17■□□□□ 0.02
COL3A1-201ENST00000304636 PTPN14Q15678 1187 aa15.17■□□□□ 0.02
COL3A1-201ENST00000304636 SRGAP3O43295 1099 aa15.16■□□□□ 0.02
COL3A1-201ENST00000304636 IGHDP01880 384 aa15.16■□□□□ 0.02
COL3A1-201ENST00000304636 CASTP20810 708 aaKnown RBP15.16■□□□□ 0.02
COL3A1-201ENST00000304636 EPS15P42566 896 aa15.16■□□□□ 0.02
COL3A1-201ENST00000304636 CCDC191Q8NCU4 936 aa15.16■□□□□ 0.02
COL3A1-201ENST00000304636 CCDC141Q6ZP82 1450 aa15.16■□□□□ 0.02
COL3A1-201ENST00000304636 DYNC1I1O14576 645 aa15.16■□□□□ 0.02
COL3A1-201ENST00000304636 MX1P20591 662 aa15.16■□□□□ 0.02
COL3A1-201ENST00000304636 ATP2B1P20020 1258 aa15.16■□□□□ 0.02
COL3A1-201ENST00000304636 BAG4O95429 457 aaKnown RBP15.15■□□□□ 0.02
COL3A1-201ENST00000304636 PODXL2Q9NZ53 605 aa15.15■□□□□ 0.02
COL3A1-201ENST00000304636 CGNQ9P2M7 1197 aaKnown RBP15.15■□□□□ 0.02
COL3A1-201ENST00000304636 RRP12Q5JTH9 1297 aaKnown RBP15.15■□□□□ 0.02
COL3A1-201ENST00000304636 SCAND2PQ9GZW5 306 aaPredicted RBP15.15■□□□□ 0.02
COL3A1-201ENST00000304636 ABCC5O15440 1437 aa15.15■□□□□ 0.02
COL3A1-201ENST00000304636 KDM4AO75164 1064 aa15.15■□□□□ 0.02
COL3A1-201ENST00000304636 TSPYL1Q9H0U9 437 aa15.15■□□□□ 0.02
COL3A1-201ENST00000304636 TMCO3Q6UWJ1 677 aa15.15■□□□□ 0.02
COL3A1-201ENST00000304636 AACSQ86V21 672 aa15.15■□□□□ 0.02
COL3A1-201ENST00000304636 IL1RAPL2Q9NP60 686 aa15.15■□□□□ 0.02
COL3A1-201ENST00000304636 CDK13Q14004 1512 aaKnown RBP15.15■□□□□ 0.02
COL3A1-201ENST00000304636 CCDC158Q5M9N0 1113 aa15.15■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms