RNA–Protein interactions for RNA: ENST00000303354.10

SCN9A-201, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 9,786 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-201ENST00000303354 CWC27Q6UX04 472 aaKnown RBP9.35□□□□□ -0.91
SCN9A-201ENST00000303354 RTEL1-TNFRSF6BF6WH68 1400 aa9.35□□□□□ -0.91
SCN9A-201ENST00000303354 POLR3DP05423 398 aaPredicted RBP9.35□□□□□ -0.91
SCN9A-201ENST00000303354 KIF7Q2M1P5 1343 aa9.34□□□□□ -0.91
SCN9A-201ENST00000303354 XBP1P17861 261 aa9.34□□□□□ -0.91
SCN9A-201ENST00000303354 NUDT16Q96DE0 195 aaKnown RBP9.34□□□□□ -0.91
SCN9A-201ENST00000303354 ZBTB3Q9H5J0 574 aa9.34□□□□□ -0.91
SCN9A-201ENST00000303354 IPO7O95373 1038 aaKnown RBP9.34□□□□□ -0.91
SCN9A-201ENST00000303354 SART3Q15020 963 aaKnown RBP9.34□□□□□ -0.91
SCN9A-201ENST00000303354 METTL24Q5JXM2 366 aa9.34□□□□□ -0.91
SCN9A-201ENST00000303354 PPP2R1AP30153 589 aa9.34□□□□□ -0.91
SCN9A-201ENST00000303354 MIA2Q96PC5 1412 aa9.34□□□□□ -0.91
SCN9A-201ENST00000303354 IGHMBP2P38935 993 aaKnown RBP9.34□□□□□ -0.91
SCN9A-201ENST00000303354 HSP90AB4PQ58FF6 505 aa9.34□□□□□ -0.91
SCN9A-201ENST00000303354 SDF4Q9BRK5 362 aa9.34□□□□□ -0.91
SCN9A-201ENST00000303354 VAT1LQ9HCJ6 419 aa9.34□□□□□ -0.91
SCN9A-201ENST00000303354 CCDC97Q96F63 343 aaPredicted RBP9.34□□□□□ -0.92
SCN9A-201ENST00000303354 AK7Q96M32 723 aa9.34□□□□□ -0.92
SCN9A-201ENST00000303354 GNAI2P04899 355 aa9.33□□□□□ -0.92
SCN9A-201ENST00000303354 SMC2O95347 1197 aa9.33□□□□□ -0.92
SCN9A-201ENST00000303354 OLFM4Q6UX06 510 aa9.33□□□□□ -0.92
SCN9A-201ENST00000303354 RPGRQ92834 1020 aaKnown RBP9.33□□□□□ -0.92
SCN9A-201ENST00000303354 SOGA3Q5TF21 947 aa9.33□□□□□ -0.92
SCN9A-201ENST00000303354 KRT28Q7Z3Y7 464 aa9.33□□□□□ -0.92
SCN9A-201ENST00000303354 RAB11FIP4Q86YS3 637 aa9.33□□□□□ -0.92
SCN9A-201ENST00000303354 SPC24Q8NBT2 197 aa9.33□□□□□ -0.92
SCN9A-201ENST00000303354 NEK4P51957 841 aa9.33□□□□□ -0.92
SCN9A-201ENST00000303354 GUCY1B3Q02153 619 aa9.33□□□□□ -0.92
SCN9A-201ENST00000303354 CCDC73Q6ZRK6 1079 aa9.33□□□□□ -0.92
SCN9A-201ENST00000303354 NME9Q86XW9 330 aa9.33□□□□□ -0.92
SCN9A-201ENST00000303354 HOOK1Q9UJC3 728 aaKnown RBP9.33□□□□□ -0.92
SCN9A-201ENST00000303354 TMEM87AQ8NBN3 555 aa9.32□□□□□ -0.92
SCN9A-201ENST00000303354 ATP5J2-PTCD1G3V325 749 aa9.32□□□□□ -0.92
SCN9A-201ENST00000303354 VTI1AQ96AJ9 217 aa9.32□□□□□ -0.92
SCN9A-201ENST00000303354 WASHC2AQ641Q2 1341 aa9.32□□□□□ -0.92
SCN9A-201ENST00000303354 CCDC144CPQ8IYA2 1237 aa9.32□□□□□ -0.92
SCN9A-201ENST00000303354 PHLDB1Q86UU1 1377 aa9.32□□□□□ -0.92
SCN9A-201ENST00000303354 TOP2AP11388 1531 aaKnown RBP9.32□□□□□ -0.92
SCN9A-201ENST00000303354 FAM177A1Q8N128 213 aaPredicted RBP9.32□□□□□ -0.92
SCN9A-201ENST00000303354 SRGAP3O43295 1099 aa9.32□□□□□ -0.92
SCN9A-201ENST00000303354 DDX11Q96FC9 970 aa9.32□□□□□ -0.92
SCN9A-201ENST00000303354 IGF1RP08069 1367 aa9.32□□□□□ -0.92
SCN9A-201ENST00000303354 F6X3S4 739 aa9.32□□□□□ -0.92
SCN9A-201ENST00000303354 C22orf23Q9BZE7 217 aa9.32□□□□□ -0.92
SCN9A-201ENST00000303354 IQSEC3Q9UPP2 1182 aaPredicted RBP9.32□□□□□ -0.92
SCN9A-201ENST00000303354 AMOTL2Q9Y2J4 779 aa9.32□□□□□ -0.92
SCN9A-201ENST00000303354 ATP6V1DQ9Y5K8 247 aa9.32□□□□□ -0.92
SCN9A-201ENST00000303354 ANKRD62A6NC57 917 aa9.32□□□□□ -0.92
SCN9A-201ENST00000303354 SKAP1Q86WV1 359 aa9.32□□□□□ -0.92
SCN9A-201ENST00000303354 CAGE1Q8TC20 777 aa9.32□□□□□ -0.92
SCN9A-201ENST00000303354 CCDC8Q9H0W5 538 aaPredicted RBP9.32□□□□□ -0.92
SCN9A-201ENST00000303354 SYCP1Q15431 976 aa9.31□□□□□ -0.92
SCN9A-201ENST00000303354 NINLQ9Y2I6 1382 aa9.31□□□□□ -0.92
SCN9A-201ENST00000303354 PSMD1Q99460 953 aa9.31□□□□□ -0.92
SCN9A-201ENST00000303354 IFT57Q9NWB7 429 aa9.31□□□□□ -0.92
SCN9A-201ENST00000303354 TRMT112Q9UI30 125 aaKnown RBP9.31□□□□□ -0.92
SCN9A-201ENST00000303354 PDZRN3Q9UPQ7 1066 aa9.31□□□□□ -0.92
SCN9A-201ENST00000303354 STARD3NLO95772 234 aa9.31□□□□□ -0.92
SCN9A-201ENST00000303354 EXOC5O00471 708 aa9.31□□□□□ -0.92
SCN9A-201ENST00000303354 ANXA1P04083 346 aa9.31□□□□□ -0.92
SCN9A-201ENST00000303354 SSR1P43307 286 aaKnown RBP9.31□□□□□ -0.92
SCN9A-201ENST00000303354 FIBPO43427 364 aa9.31□□□□□ -0.92
SCN9A-201ENST00000303354 DDX24Q9GZR7 859 aaKnown RBP eCLIP9.31□□□□□ -0.92
SCN9A-201ENST00000303354 JAG2Q9Y219 1238 aa9.31□□□□□ -0.92
SCN9A-201ENST00000303354 RFC4P35249 363 aa9.3□□□□□ -0.92
SCN9A-201ENST00000303354 BOLA2Q9H3K6 86 aa9.3□□□□□ -0.92
SCN9A-201ENST00000303354 MKNK2Q9HBH9 465 aa9.3□□□□□ -0.92
SCN9A-201ENST00000303354 CNTLNQ9NXG0 1405 aa9.3□□□□□ -0.92
SCN9A-201ENST00000303354 ROCK1Q13464 1354 aa9.3□□□□□ -0.92
SCN9A-201ENST00000303354 DDX11L8A8MPP1 907 aa9.3□□□□□ -0.92
SCN9A-201ENST00000303354 ZNF408Q9H9D4 720 aa9.3□□□□□ -0.92
SCN9A-201ENST00000303354 CCDC70Q6NSX1 233 aa9.3□□□□□ -0.92
SCN9A-201ENST00000303354 SRCIN1Q9C0H9 1055 aa9.3□□□□□ -0.92
SCN9A-201ENST00000303354 ANKRD50Q9ULJ7 1429 aa9.3□□□□□ -0.92
SCN9A-201ENST00000303354 CCDC96Q2M329 555 aa9.3□□□□□ -0.92
SCN9A-201ENST00000303354 TMOD2Q9NZR1 351 aa9.3□□□□□ -0.92
SCN9A-201ENST00000303354 ERBINQ96RT1 1412 aa9.3□□□□□ -0.92
SCN9A-201ENST00000303354 PRPF40AO75400 957 aaKnown RBP9.29□□□□□ -0.92
SCN9A-201ENST00000303354 RIMBP2O15034 1052 aa9.29□□□□□ -0.92
SCN9A-201ENST00000303354 EXOC6BQ9Y2D4 811 aa9.29□□□□□ -0.92
SCN9A-201ENST00000303354 C16orf71Q8IYS4 520 aaPredicted RBP9.29□□□□□ -0.92
SCN9A-201ENST00000303354 MAGEC2Q9UBF1 373 aaPredicted RBP9.29□□□□□ -0.92
SCN9A-201ENST00000303354 UBA5Q9GZZ9 404 aa9.29□□□□□ -0.92
SCN9A-201ENST00000303354 GNAT3A8MTJ3 354 aa9.29□□□□□ -0.92
SCN9A-201ENST00000303354 DZIP1Q86YF9 867 aaKnown RBP9.29□□□□□ -0.92
SCN9A-201ENST00000303354 CDC45O75419 566 aa9.29□□□□□ -0.92
SCN9A-201ENST00000303354 PSMA5P28066 241 aa9.29□□□□□ -0.92
SCN9A-201ENST00000303354 ENOX2Q16206 610 aaKnown RBP9.29□□□□□ -0.92
SCN9A-201ENST00000303354 CEP126Q9P2H0 1117 aa9.28□□□□□ -0.92
SCN9A-201ENST00000303354 GNAI3P08754 354 aa9.28□□□□□ -0.92
SCN9A-201ENST00000303354 SNRKQ9NRH2 765 aa9.28□□□□□ -0.92
SCN9A-201ENST00000303354 LRRCC1Q9C099 1032 aa9.28□□□□□ -0.92
SCN9A-201ENST00000303354 NEBLO76041 1014 aa9.28□□□□□ -0.92
SCN9A-201ENST00000303354 RANBP6O60518 1105 aaKnown RBP9.28□□□□□ -0.92
SCN9A-201ENST00000303354 TMX1Q9H3N1 280 aa9.28□□□□□ -0.92
SCN9A-201ENST00000303354 STK38Q15208 465 aa9.28□□□□□ -0.92
SCN9A-201ENST00000303354 NACAP1Q9BZK3 213 aa9.28□□□□□ -0.92
SCN9A-201ENST00000303354 NCKAP5LQ9HCH0 1330 aa9.27□□□□□ -0.92
SCN9A-201ENST00000303354 AIDAQ96BJ3 306 aa9.27□□□□□ -0.92
SCN9A-201ENST00000303354 EMILIN1Q9Y6C2 1016 aa9.27□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 63.2 ms