RNA–Protein interactions for RNA: ENST00000299847.6

CHRFAM7A-201, Transcript of CHRNA7 (exons 5-10) and FAM7A (exons A-E) fusion, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHRFAM7A, Length 6,220 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHRFAM7A-201ENST00000299847 FAM193AP78312 1265 aa16.13■□□□□ 0.17
CHRFAM7A-201ENST00000299847 SMARCA4P51532 1647 aa16.13■□□□□ 0.17
CHRFAM7A-201ENST00000299847 NOM1Q5C9Z4 860 aaKnown RBP16.13■□□□□ 0.17
CHRFAM7A-201ENST00000299847 SMG6Q86US8 1419 aaKnown RBP16.13■□□□□ 0.17
CHRFAM7A-201ENST00000299847 TATP17735 454 aaPredicted RBP16.12■□□□□ 0.17
CHRFAM7A-201ENST00000299847 SEPT11Q9NVA2 429 aaKnown RBP16.12■□□□□ 0.17
CHRFAM7A-201ENST00000299847 SKAP1Q86WV1 359 aa16.12■□□□□ 0.17
CHRFAM7A-201ENST00000299847 CUX1P39880 1505 aa16.12■□□□□ 0.17
CHRFAM7A-201ENST00000299847 RABEP1Q15276 862 aa16.12■□□□□ 0.17
CHRFAM7A-201ENST00000299847 NUTM1Q86Y26 1132 aa16.11■□□□□ 0.17
CHRFAM7A-201ENST00000299847 ANKRD62A6NC57 917 aa16.11■□□□□ 0.17
CHRFAM7A-201ENST00000299847 CENPHQ9H3R5 247 aa16.11■□□□□ 0.17
CHRFAM7A-201ENST00000299847 DEF6Q9H4E7 631 aa16.1■□□□□ 0.17
CHRFAM7A-201ENST00000299847 SSBP05455 408 aaKnown RBP eCLIP16.1■□□□□ 0.17
CHRFAM7A-201ENST00000299847 ZNF530Q6P9A1 599 aaPredicted RBP16.1■□□□□ 0.17
CHRFAM7A-201ENST00000299847 ERC1Q8IUD2 1116 aa16.1■□□□□ 0.17
CHRFAM7A-201ENST00000299847 NCOA2Q15596 1464 aa16.1■□□□□ 0.17
CHRFAM7A-201ENST00000299847 NEFHP12036 1026 aa16.1■□□□□ 0.17
CHRFAM7A-201ENST00000299847 TSPYL1Q9H0U9 437 aa16.1■□□□□ 0.17
CHRFAM7A-201ENST00000299847 HIP1O00291 1037 aa16.1■□□□□ 0.17
CHRFAM7A-201ENST00000299847 GCC1Q96CN9 775 aa16.1■□□□□ 0.17
CHRFAM7A-201ENST00000299847 DDX24Q9GZR7 859 aaKnown RBP eCLIP16.1■□□□□ 0.17
CHRFAM7A-201ENST00000299847 CCDC184Q52MB2 194 aa16.09■□□□□ 0.17
CHRFAM7A-201ENST00000299847 PDCL3Q9H2J4 239 aa16.09■□□□□ 0.17
CHRFAM7A-201ENST00000299847 LRRC9Q6ZRR7 1453 aa16.09■□□□□ 0.17
CHRFAM7A-201ENST00000299847 JAKMIP1Q96N16 626 aaKnown RBP16.09■□□□□ 0.17
CHRFAM7A-201ENST00000299847 DDX11Q96FC9 970 aa16.09■□□□□ 0.17
CHRFAM7A-201ENST00000299847 K7ELQ4 463 aaPredicted RBP16.09■□□□□ 0.17
CHRFAM7A-201ENST00000299847 CAMK4Q16566 473 aa16.09■□□□□ 0.17
CHRFAM7A-201ENST00000299847 LARP1BQ659C4 914 aaKnown RBP16.09■□□□□ 0.17
CHRFAM7A-201ENST00000299847 PIP4K2BP78356 416 aa16.08■□□□□ 0.17
CHRFAM7A-201ENST00000299847 KIF21BO75037 1637 aa16.08■□□□□ 0.16
CHRFAM7A-201ENST00000299847 SMARCA5O60264 1052 aaPredicted RBP16.08■□□□□ 0.16
CHRFAM7A-201ENST00000299847 MBD3O95983 291 aa16.08■□□□□ 0.16
CHRFAM7A-201ENST00000299847 WWC2Q6AWC2 1192 aa16.08■□□□□ 0.16
CHRFAM7A-201ENST00000299847 BTBD11A6QL63 1104 aa16.08■□□□□ 0.16
CHRFAM7A-201ENST00000299847 PDRG1Q9NUG6 133 aa16.08■□□□□ 0.16
CHRFAM7A-201ENST00000299847 GNL3LQ9NVN8 582 aaKnown RBP16.08■□□□□ 0.16
CHRFAM7A-201ENST00000299847 IGF1RP08069 1367 aa16.08■□□□□ 0.16
CHRFAM7A-201ENST00000299847 C11orf95C9JLR9 678 aaPredicted RBP16.07■□□□□ 0.16
CHRFAM7A-201ENST00000299847 PPFIBP1Q86W92 1011 aa16.07■□□□□ 0.16
CHRFAM7A-201ENST00000299847 CHD1LQ86WJ1 897 aa16.07■□□□□ 0.16
CHRFAM7A-201ENST00000299847 SRGAP3O43295 1099 aa16.07■□□□□ 0.16
CHRFAM7A-201ENST00000299847 CCDC57Q2TAC2 916 aa16.07■□□□□ 0.16
CHRFAM7A-201ENST00000299847 ZSCAN29Q8IWY8 852 aaPredicted RBP16.07■□□□□ 0.16
CHRFAM7A-201ENST00000299847 ERCC4Q92889 916 aaPredicted RBP16.07■□□□□ 0.16
CHRFAM7A-201ENST00000299847 CALRP27797 417 aaKnown RBP16.07■□□□□ 0.16
CHRFAM7A-201ENST00000299847 MPHOSPH8Q99549 860 aa16.07■□□□□ 0.16
CHRFAM7A-201ENST00000299847 SRCIN1Q9C0H9 1055 aa16.07■□□□□ 0.16
CHRFAM7A-201ENST00000299847 RRBP1Q9P2E9 1410 aaKnown RBP16.06■□□□□ 0.16
CHRFAM7A-201ENST00000299847 MATR3P43243 847 aaKnown RBP eCLIP16.06■□□□□ 0.16
CHRFAM7A-201ENST00000299847 FYCO1Q9BQS8 1478 aa16.06■□□□□ 0.16
CHRFAM7A-201ENST00000299847 CCDC181Q5TID7 509 aa16.06■□□□□ 0.16
CHRFAM7A-201ENST00000299847 CCDC192P0DO97 292 aa16.06■□□□□ 0.16
CHRFAM7A-201ENST00000299847 USP5P45974 858 aa16.06■□□□□ 0.16
CHRFAM7A-201ENST00000299847 TDO2P48775 406 aa16.06■□□□□ 0.16
CHRFAM7A-201ENST00000299847 NBPF8Q3BBV2 869 aa16.06■□□□□ 0.16
CHRFAM7A-201ENST00000299847 THUMPD2Q9BTF0 503 aaKnown RBP16.06■□□□□ 0.16
CHRFAM7A-201ENST00000299847 PDCP20941 246 aa16.06■□□□□ 0.16
CHRFAM7A-201ENST00000299847 CT47B1P0C2W7 299 aaPredicted RBP16.05■□□□□ 0.16
CHRFAM7A-201ENST00000299847 ZNHIT6Q9NWK9 470 aaKnown RBP16.05■□□□□ 0.16
CHRFAM7A-201ENST00000299847 RAI14Q9P0K7 980 aa16.05■□□□□ 0.16
CHRFAM7A-201ENST00000299847 MYO6Q9UM54 1294 aa16.05■□□□□ 0.16
CHRFAM7A-201ENST00000299847 CCT4P50991 539 aaKnown RBP16.05■□□□□ 0.16
CHRFAM7A-201ENST00000299847 DCTN1Q14203 1278 aa16.05■□□□□ 0.16
CHRFAM7A-201ENST00000299847 TRIM22Q8IYM9 498 aa16.05■□□□□ 0.16
CHRFAM7A-201ENST00000299847 SPATA32Q96LK8 384 aa16.05■□□□□ 0.16
CHRFAM7A-201ENST00000299847 SLC26A8Q96RN1 970 aa16.05■□□□□ 0.16
CHRFAM7A-201ENST00000299847 CFTRP13569 1480 aa16.04■□□□□ 0.16
CHRFAM7A-201ENST00000299847 TAX1BP1Q86VP1 789 aa16.04■□□□□ 0.16
CHRFAM7A-201ENST00000299847 MVPQ14764 893 aaKnown RBP16.04■□□□□ 0.16
CHRFAM7A-201ENST00000299847 ENOX2Q16206 610 aaKnown RBP16.04■□□□□ 0.16
CHRFAM7A-201ENST00000299847 CCDC191Q8NCU4 936 aa16.04■□□□□ 0.16
CHRFAM7A-201ENST00000299847 SOGA3Q5TF21 947 aa16.04■□□□□ 0.16
CHRFAM7A-201ENST00000299847 GRPEL1Q9HAV7 217 aa16.04■□□□□ 0.16
CHRFAM7A-201ENST00000299847 MPHOSPH10O00566 681 aaKnown RBP16.04■□□□□ 0.16
CHRFAM7A-201ENST00000299847 NACAP1Q9BZK3 213 aa16.04■□□□□ 0.16
CHRFAM7A-201ENST00000299847 CASTP20810 708 aaKnown RBP16.03■□□□□ 0.16
CHRFAM7A-201ENST00000299847 MCM2P49736 904 aa16.03■□□□□ 0.16
CHRFAM7A-201ENST00000299847 LEKR1Q6ZMV7 388 aa16.03■□□□□ 0.16
CHRFAM7A-201ENST00000299847 TMX1Q9H3N1 280 aa16.03■□□□□ 0.16
CHRFAM7A-201ENST00000299847 UQCRHLA0A096LP55 91 aa16.03■□□□□ 0.16
CHRFAM7A-201ENST00000299847 IDH1O75874 414 aaKnown RBP16.03■□□□□ 0.16
CHRFAM7A-201ENST00000299847 UQCRHP07919 91 aa16.03■□□□□ 0.16
CHRFAM7A-201ENST00000299847 RDXP35241 583 aaKnown RBP16.03■□□□□ 0.16
CHRFAM7A-201ENST00000299847 HSP90AB3PQ58FF7 597 aa16.03■□□□□ 0.16
CHRFAM7A-201ENST00000299847 ATF7IPQ6VMQ6 1270 aa16.03■□□□□ 0.16
CHRFAM7A-201ENST00000299847 CWC15Q9P013 229 aaKnown RBP16.03■□□□□ 0.16
CHRFAM7A-201ENST00000299847 AAMPQ13685 434 aa16.03■□□□□ 0.16
CHRFAM7A-201ENST00000299847 AEBP1Q8IUX7 1158 aa16.03■□□□□ 0.16
CHRFAM7A-201ENST00000299847 LARP6Q9BRS8 491 aaKnown RBP16.03■□□□□ 0.16
CHRFAM7A-201ENST00000299847 CHMP4BP1P59074 171 aa16.02■□□□□ 0.16
CHRFAM7A-201ENST00000299847 USHBP1Q8N6Y0 703 aa16.02■□□□□ 0.16
CHRFAM7A-201ENST00000299847 EXOC6BQ9Y2D4 811 aa16.02■□□□□ 0.16
CHRFAM7A-201ENST00000299847 ZC3H6P61129 1189 aaKnown RBP16.02■□□□□ 0.16
CHRFAM7A-201ENST00000299847 MAPK8IP2Q13387 824 aaPredicted RBP16.02■□□□□ 0.15
CHRFAM7A-201ENST00000299847 MCM10Q7L590 875 aa16.02■□□□□ 0.15
CHRFAM7A-201ENST00000299847 WDR33Q9C0J8 1336 aaKnown RBP16.02■□□□□ 0.15
CHRFAM7A-201ENST00000299847 KRT85P78386 507 aa16.01■□□□□ 0.15
CHRFAM7A-201ENST00000299847 BLOC1S2Q6QNY1 142 aa16.01■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms