RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 C14orf37Q86TY3 774 aa7.73□□□□□ -1.17
VPS35-201ENST00000299138 HOMER1Q86YM7 354 aa7.73□□□□□ -1.17
VPS35-201ENST00000299138 ZNF445P59923 1031 aa7.73□□□□□ -1.17
VPS35-201ENST00000299138 DEF6Q9H4E7 631 aa7.73□□□□□ -1.17
VPS35-201ENST00000299138 APBB1O00213 710 aa7.73□□□□□ -1.17
VPS35-201ENST00000299138 FCHSD2O94868 740 aa7.73□□□□□ -1.17
VPS35-201ENST00000299138 TUBB4AP04350 444 aa7.73□□□□□ -1.17
VPS35-201ENST00000299138 RAB3GAP1Q15042 981 aa7.73□□□□□ -1.17
VPS35-201ENST00000299138 NBPF1Q3BBV0 1214 aa7.73□□□□□ -1.17
VPS35-201ENST00000299138 HSP90B2PQ58FF3 399 aa7.73□□□□□ -1.17
VPS35-201ENST00000299138 GGT6Q6P531 493 aa7.73□□□□□ -1.17
VPS35-201ENST00000299138 BCORL1Q5H9F3 1711 aa7.72□□□□□ -1.17
VPS35-201ENST00000299138 DCTN1Q14203 1278 aa7.72□□□□□ -1.17
VPS35-201ENST00000299138 RASSF8Q8NHQ8 419 aa7.72□□□□□ -1.17
VPS35-201ENST00000299138 TSR1Q2NL82 804 aaKnown RBP7.72□□□□□ -1.17
VPS35-201ENST00000299138 TICAM2Q86XR7 235 aa7.72□□□□□ -1.17
VPS35-201ENST00000299138 CYB5RLQ6IPT4 315 aa7.72□□□□□ -1.17
VPS35-201ENST00000299138 PREX2Q70Z35 1606 aa7.72□□□□□ -1.17
VPS35-201ENST00000299138 U2AF1L5P0DN76 240 aaPredicted RBP7.72□□□□□ -1.17
VPS35-201ENST00000299138 U2AF1Q01081 240 aaKnown RBP eCLIP7.72□□□□□ -1.17
VPS35-201ENST00000299138 LEKR1Q6ZMV7 388 aa7.72□□□□□ -1.17
VPS35-201ENST00000299138 ANAPC15P60006 121 aa7.72□□□□□ -1.17
VPS35-201ENST00000299138 IPO4Q8TEX9 1081 aaKnown RBP7.72□□□□□ -1.17
VPS35-201ENST00000299138 POGKQ9P215 609 aa7.72□□□□□ -1.17
VPS35-201ENST00000299138 RNF17Q9BXT8 1623 aaKnown RBP7.72□□□□□ -1.17
VPS35-201ENST00000299138 MED14O60244 1454 aa7.71□□□□□ -1.17
VPS35-201ENST00000299138 TPD52L1Q16890 204 aaPredicted RBP7.71□□□□□ -1.17
VPS35-201ENST00000299138 ITPRIPQ8IWB1 547 aa7.71□□□□□ -1.17
VPS35-201ENST00000299138 NCOA3Q9Y6Q9 1424 aa7.71□□□□□ -1.17
VPS35-201ENST00000299138 PLA2R1Q13018 1463 aa7.71□□□□□ -1.18
VPS35-201ENST00000299138 MFAP1P55081 439 aaKnown RBP7.71□□□□□ -1.18
VPS35-201ENST00000299138 FOXD4L6Q3SYB3 417 aaPredicted RBP7.71□□□□□ -1.18
VPS35-201ENST00000299138 FOXD4L3Q6VB84 417 aaPredicted RBP7.71□□□□□ -1.18
VPS35-201ENST00000299138 CENPHQ9H3R5 247 aa7.71□□□□□ -1.18
VPS35-201ENST00000299138 SAMD9LQ8IVG5 1584 aa7.71□□□□□ -1.18
VPS35-201ENST00000299138 GOLGA6L19H0YKK7 550 aa7.71□□□□□ -1.18
VPS35-201ENST00000299138 ZNF500O60304 480 aaPredicted RBP7.71□□□□□ -1.18
VPS35-201ENST00000299138 HDGFP51858 240 aaKnown RBP7.71□□□□□ -1.18
VPS35-201ENST00000299138 CDR1P51861 262 aa7.71□□□□□ -1.18
VPS35-201ENST00000299138 ARGLU1Q9NWB6 273 aaPredicted RBP7.71□□□□□ -1.18
VPS35-201ENST00000299138 CLGNO14967 610 aa7.71□□□□□ -1.18
VPS35-201ENST00000299138 ERICH4A6NGS2 130 aa7.7□□□□□ -1.18
VPS35-201ENST00000299138 NEXNQ0ZGT2 675 aa7.7□□□□□ -1.18
VPS35-201ENST00000299138 SLTMQ9NWH9 1034 aaKnown RBP eCLIP7.7□□□□□ -1.18
VPS35-201ENST00000299138 NPHP1O15259 732 aa7.7□□□□□ -1.18
VPS35-201ENST00000299138 ACBD3Q9H3P7 528 aa7.7□□□□□ -1.18
VPS35-201ENST00000299138 SLC52A1Q9NWF4 448 aa7.7□□□□□ -1.18
VPS35-201ENST00000299138 SASS6Q6UVJ0 657 aa7.7□□□□□ -1.18
VPS35-201ENST00000299138 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP7.7□□□□□ -1.18
VPS35-201ENST00000299138 CLASRPQ8N2M8 674 aaKnown RBP7.7□□□□□ -1.18
VPS35-201ENST00000299138 ARHGAP31Q2M1Z3 1444 aa7.7□□□□□ -1.18
VPS35-201ENST00000299138 SMAP1Q8IYB5 467 aaPredicted RBP7.7□□□□□ -1.18
VPS35-201ENST00000299138 SRCIN1Q9C0H9 1055 aa7.7□□□□□ -1.18
VPS35-201ENST00000299138 PPP6R1Q9UPN7 881 aa7.7□□□□□ -1.18
VPS35-201ENST00000299138 LMTK2Q8IWU2 1503 aa7.69□□□□□ -1.18
VPS35-201ENST00000299138 SETBP1Q9Y6X0 1596 aa7.69□□□□□ -1.18
VPS35-201ENST00000299138 SLC4A3P48751 1232 aa7.69□□□□□ -1.18
VPS35-201ENST00000299138 KIAA1211Q6ZU35 1233 aa7.69□□□□□ -1.18
VPS35-201ENST00000299138 U2SURPO15042 1029 aaKnown RBP7.69□□□□□ -1.18
VPS35-201ENST00000299138 CCAR1Q8IX12 1150 aaKnown RBP7.69□□□□□ -1.18
VPS35-201ENST00000299138 MNS1Q8NEH6 495 aa7.69□□□□□ -1.18
VPS35-201ENST00000299138 INTS4Q96HW7 963 aaKnown RBP7.69□□□□□ -1.18
VPS35-201ENST00000299138 KIF3AQ9Y496 699 aa7.69□□□□□ -1.18
VPS35-201ENST00000299138 KIF2AO00139 706 aaPredicted RBP7.69□□□□□ -1.18
VPS35-201ENST00000299138 AFAP1Q8N556 730 aa7.69□□□□□ -1.18
VPS35-201ENST00000299138 NOL7Q9UMY1 257 aaKnown RBP7.69□□□□□ -1.18
VPS35-201ENST00000299138 C14orf93Q9H972 538 aaKnown RBP7.69□□□□□ -1.18
VPS35-201ENST00000299138 PPIP5K1Q6PFW1 1433 aa7.69□□□□□ -1.18
VPS35-201ENST00000299138 CHD1LQ86WJ1 897 aa7.69□□□□□ -1.18
VPS35-201ENST00000299138 KDM5AP29375 1690 aaKnown RBP7.68□□□□□ -1.18
VPS35-201ENST00000299138 NUCB1Q02818 461 aa7.68□□□□□ -1.18
VPS35-201ENST00000299138 DIAPH1O60610 1272 aaKnown RBP7.68□□□□□ -1.18
VPS35-201ENST00000299138 RNF20Q5VTR2 975 aa7.68□□□□□ -1.18
VPS35-201ENST00000299138 SSH2Q76I76 1423 aa7.68□□□□□ -1.18
VPS35-201ENST00000299138 BECN2A8MW95 431 aa7.68□□□□□ -1.18
VPS35-201ENST00000299138 PRDM10Q9NQV6 1147 aa7.68□□□□□ -1.18
VPS35-201ENST00000299138 C20orf194Q5TEA3 1177 aa7.67□□□□□ -1.18
VPS35-201ENST00000299138 KIF20AO95235 890 aa7.67□□□□□ -1.18
VPS35-201ENST00000299138 ABCF1Q8NE71 845 aaKnown RBP eCLIP7.67□□□□□ -1.18
VPS35-201ENST00000299138 INCENPQ9NQS7 918 aa7.67□□□□□ -1.18
VPS35-201ENST00000299138 IFT57Q9NWB7 429 aa7.67□□□□□ -1.18
VPS35-201ENST00000299138 ZKSCAN5Q9Y2L8 839 aa7.67□□□□□ -1.18
VPS35-201ENST00000299138 SYCP2Q9BX26 1530 aa7.67□□□□□ -1.18
VPS35-201ENST00000299138 NSD3Q9BZ95 1437 aa7.67□□□□□ -1.18
VPS35-201ENST00000299138 HSP90AB4PQ58FF6 505 aa7.67□□□□□ -1.18
VPS35-201ENST00000299138 PCMTD1Q96MG8 357 aaPredicted RBP7.67□□□□□ -1.18
VPS35-201ENST00000299138 USP19O94966 1318 aa7.67□□□□□ -1.18
VPS35-201ENST00000299138 ZRSR2Q15696 482 aaKnown RBP7.67□□□□□ -1.18
VPS35-201ENST00000299138 KIAA0754O94854 1291 aa7.67□□□□□ -1.18
VPS35-201ENST00000299138 TPM1P09493 284 aa7.67□□□□□ -1.18
VPS35-201ENST00000299138 PANK1Q8TE04 598 aa7.67□□□□□ -1.18
VPS35-201ENST00000299138 CCDC34Q96HJ3 373 aa7.67□□□□□ -1.18
VPS35-201ENST00000299138 GTPBP4Q9BZE4 634 aaKnown RBP7.67□□□□□ -1.18
VPS35-201ENST00000299138 LRRIQ1Q96JM4 1722 aa7.67□□□□□ -1.18
VPS35-201ENST00000299138 WDR33Q9C0J8 1336 aaKnown RBP7.67□□□□□ -1.18
VPS35-201ENST00000299138 GORABQ5T7V8 394 aa7.67□□□□□ -1.18
VPS35-201ENST00000299138 PIK3R4Q99570 1358 aa7.66□□□□□ -1.18
VPS35-201ENST00000299138 USP32Q8NFA0 1604 aa7.66□□□□□ -1.18
VPS35-201ENST00000299138 NEMFO60524 1076 aa7.66□□□□□ -1.18
VPS35-201ENST00000299138 BCAR3O75815 825 aa7.66□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms