RNA–Protein interactions for RNA: ENST00000293441.5

SHANK1-201, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene SHANK1, Length 6,643 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-201ENST00000293441 CCDC69A6NI79 296 aa20.62■□□□□ 0.89
SHANK1-201ENST00000293441 CCDC85AQ96PX6 553 aaPredicted RBP20.62■□□□□ 0.89
SHANK1-201ENST00000293441 NUDT16Q96DE0 195 aaKnown RBP20.62■□□□□ 0.89
SHANK1-201ENST00000293441 AACSQ86V21 672 aa20.61■□□□□ 0.89
SHANK1-201ENST00000293441 RPGRIP1LQ68CZ1 1315 aa20.61■□□□□ 0.89
SHANK1-201ENST00000293441 KINO60870 393 aaKnown RBP20.61■□□□□ 0.89
SHANK1-201ENST00000293441 NUP133Q8WUM0 1156 aa20.61■□□□□ 0.89
SHANK1-201ENST00000293441 ZSCAN29Q8IWY8 852 aaPredicted RBP20.61■□□□□ 0.89
SHANK1-201ENST00000293441 RNF214Q8ND24 703 aa20.61■□□□□ 0.89
SHANK1-201ENST00000293441 RUFY1Q96T51 708 aa20.61■□□□□ 0.89
SHANK1-201ENST00000293441 HSP90AA2PQ14568 343 aaPredicted RBP20.6■□□□□ 0.89
SHANK1-201ENST00000293441 ATAD2Q6PL18 1390 aa20.6■□□□□ 0.89
SHANK1-201ENST00000293441 MAGEC2Q9UBF1 373 aaPredicted RBP20.6■□□□□ 0.89
SHANK1-201ENST00000293441 BRPF1P55201 1214 aaPredicted RBP20.6■□□□□ 0.89
SHANK1-201ENST00000293441 ZNF396Q96N95 335 aaPredicted RBP20.6■□□□□ 0.89
SHANK1-201ENST00000293441 MNS1Q8NEH6 495 aa20.59■□□□□ 0.89
SHANK1-201ENST00000293441 FMNL2Q96PY5 1086 aa20.59■□□□□ 0.89
SHANK1-201ENST00000293441 CYP46A1Q9Y6A2 500 aa20.59■□□□□ 0.89
SHANK1-201ENST00000293441 CDK13Q14004 1512 aaKnown RBP20.59■□□□□ 0.89
SHANK1-201ENST00000293441 STK38Q15208 465 aa20.59■□□□□ 0.89
SHANK1-201ENST00000293441 SMC2O95347 1197 aa20.59■□□□□ 0.89
SHANK1-201ENST00000293441 WDR63Q8IWG1 891 aa20.59■□□□□ 0.89
SHANK1-201ENST00000293441 FANCIQ9NVI1 1328 aa20.59■□□□□ 0.89
SHANK1-201ENST00000293441 PDE3AQ14432 1141 aa20.58■□□□□ 0.89
SHANK1-201ENST00000293441 ZSCAN25Q6NSZ9 544 aa20.58■□□□□ 0.89
SHANK1-201ENST00000293441 SRGAP3O43295 1099 aa20.58■□□□□ 0.89
SHANK1-201ENST00000293441 PDCP20941 246 aa20.58■□□□□ 0.89
SHANK1-201ENST00000293441 GNAT3A8MTJ3 354 aa20.58■□□□□ 0.88
SHANK1-201ENST00000293441 WAPLQ7Z5K2 1190 aa20.58■□□□□ 0.88
SHANK1-201ENST00000293441 CAGE1Q8TC20 777 aa20.58■□□□□ 0.88
SHANK1-201ENST00000293441 MIS18AQ9NYP9 233 aa20.58■□□□□ 0.88
SHANK1-201ENST00000293441 TOP2BQ02880 1626 aa20.57■□□□□ 0.88
SHANK1-201ENST00000293441 MCM2P49736 904 aa20.57■□□□□ 0.88
SHANK1-201ENST00000293441 FIBPO43427 364 aa20.57■□□□□ 0.88
SHANK1-201ENST00000293441 CAVIN1Q6NZI2 390 aaKnown RBP20.57■□□□□ 0.88
SHANK1-201ENST00000293441 RAI14Q9P0K7 980 aa20.57■□□□□ 0.88
SHANK1-201ENST00000293441 ATF7IPQ6VMQ6 1270 aa20.57■□□□□ 0.88
SHANK1-201ENST00000293441 ZHX3Q9H4I2 956 aa20.57■□□□□ 0.88
SHANK1-201ENST00000293441 NSD3Q9BZ95 1437 aa20.57■□□□□ 0.88
SHANK1-201ENST00000293441 RABEP1Q15276 862 aa20.56■□□□□ 0.88
SHANK1-201ENST00000293441 TRIM22Q8IYM9 498 aa20.56■□□□□ 0.88
SHANK1-201ENST00000293441 ANKRD30BQ9BXX2 1392 aa20.56■□□□□ 0.88
SHANK1-201ENST00000293441 TDO2P48775 406 aa20.56■□□□□ 0.88
SHANK1-201ENST00000293441 PRPF40AO75400 957 aaKnown RBP20.55■□□□□ 0.88
SHANK1-201ENST00000293441 STARD3NLO95772 234 aa20.55■□□□□ 0.88
SHANK1-201ENST00000293441 IGHMBP2P38935 993 aaKnown RBP20.55■□□□□ 0.88
SHANK1-201ENST00000293441 FILIP1LQ4L180 1135 aa20.55■□□□□ 0.88
SHANK1-201ENST00000293441 TRIM5Q9C035 493 aa20.55■□□□□ 0.88
SHANK1-201ENST00000293441 CEP126Q9P2H0 1117 aa20.55■□□□□ 0.88
SHANK1-201ENST00000293441 SOGA3Q5TF21 947 aa20.55■□□□□ 0.88
SHANK1-201ENST00000293441 CCDC173Q0VFZ6 552 aa20.54■□□□□ 0.88
SHANK1-201ENST00000293441 ZNF771Q7L3S4 317 aaPredicted RBP20.54■□□□□ 0.88
SHANK1-201ENST00000293441 KCNH5Q8NCM2 988 aa20.54■□□□□ 0.88
SHANK1-201ENST00000293441 TIAM1Q13009 1591 aa20.54■□□□□ 0.88
SHANK1-201ENST00000293441 ARHGEF11O15085 1522 aa20.54■□□□□ 0.88
SHANK1-201ENST00000293441 EPRSP07814 1512 aaKnown RBP20.54■□□□□ 0.88
SHANK1-201ENST00000293441 AK7Q96M32 723 aa20.54■□□□□ 0.88
SHANK1-201ENST00000293441 PTCD1O75127 700 aaKnown RBP20.54■□□□□ 0.88
SHANK1-201ENST00000293441 LETM1O95202 739 aaPredicted RBP20.54■□□□□ 0.88
SHANK1-201ENST00000293441 LRP2BPQ9P2M1 347 aa20.54■□□□□ 0.88
SHANK1-201ENST00000293441 SYCP1Q15431 976 aa20.53■□□□□ 0.88
SHANK1-201ENST00000293441 DNMBPQ6XZF7 1577 aa20.53■□□□□ 0.88
SHANK1-201ENST00000293441 NASPP49321 788 aaPredicted RBP20.53■□□□□ 0.88
SHANK1-201ENST00000293441 NFKBIBQ15653 356 aa20.53■□□□□ 0.88
SHANK1-201ENST00000293441 IL1RAPL2Q9NP60 686 aa20.53■□□□□ 0.88
SHANK1-201ENST00000293441 ANKRD1Q15327 319 aa20.53■□□□□ 0.88
SHANK1-201ENST00000293441 CCDC61Q9Y6R9 512 aa20.53■□□□□ 0.88
SHANK1-201ENST00000293441 MVPQ14764 893 aaKnown RBP20.53■□□□□ 0.88
SHANK1-201ENST00000293441 ADAMTS2O95450 1211 aa20.52■□□□□ 0.88
SHANK1-201ENST00000293441 CWC27Q6UX04 472 aaKnown RBP20.52■□□□□ 0.88
SHANK1-201ENST00000293441 USHBP1Q8N6Y0 703 aa20.52■□□□□ 0.88
SHANK1-201ENST00000293441 PAF1Q8N7H5 531 aa20.52■□□□□ 0.88
SHANK1-201ENST00000293441 TMOD3Q9NYL9 352 aa20.52■□□□□ 0.88
SHANK1-201ENST00000293441 FCHSD2O94868 740 aa20.52■□□□□ 0.88
SHANK1-201ENST00000293441 AKNAQ7Z591 1439 aa20.52■□□□□ 0.88
SHANK1-201ENST00000293441 TEX35Q5T0J7 233 aa20.52■□□□□ 0.88
SHANK1-201ENST00000293441 RSPH6AQ9H0K4 717 aa20.52■□□□□ 0.88
SHANK1-201ENST00000293441 NFE2L2Q16236 605 aa20.51■□□□□ 0.87
SHANK1-201ENST00000293441 PIBF1Q8WXW3 757 aa20.51■□□□□ 0.87
SHANK1-201ENST00000293441 CT47B1P0C2W7 299 aaPredicted RBP20.51■□□□□ 0.87
SHANK1-201ENST00000293441 CHD1LQ86WJ1 897 aa20.51■□□□□ 0.87
SHANK1-201ENST00000293441 SMARCE1Q969G3 411 aa20.51■□□□□ 0.87
SHANK1-201ENST00000293441 MCM10Q7L590 875 aa20.51■□□□□ 0.87
SHANK1-201ENST00000293441 FAM13BQ9NYF5 915 aa20.51■□□□□ 0.87
SHANK1-201ENST00000293441 CD109Q6YHK3 1445 aa20.5■□□□□ 0.87
SHANK1-201ENST00000293441 IDH1O75874 414 aaKnown RBP20.5■□□□□ 0.87
SHANK1-201ENST00000293441 TSPY26PQ9H489 355 aa20.5■□□□□ 0.87
SHANK1-201ENST00000293441 UBAC1Q9BSL1 405 aa20.5■□□□□ 0.87
SHANK1-201ENST00000293441 CCDC39Q9UFE4 941 aa20.5■□□□□ 0.87
SHANK1-201ENST00000293441 CDR1P51861 262 aa20.49■□□□□ 0.87
SHANK1-201ENST00000293441 TRAK2O60296 914 aa20.49■□□□□ 0.87
SHANK1-201ENST00000293441 ZPR1O75312 459 aa20.49■□□□□ 0.87
SHANK1-201ENST00000293441 JMYQ8N9B5 988 aa20.49■□□□□ 0.87
SHANK1-201ENST00000293441 ARGLU1Q9NWB6 273 aaPredicted RBP20.49■□□□□ 0.87
SHANK1-201ENST00000293441 MPHOSPH10O00566 681 aaKnown RBP20.49■□□□□ 0.87
SHANK1-201ENST00000293441 METTL24Q5JXM2 366 aa20.49■□□□□ 0.87
SHANK1-201ENST00000293441 PDZRN4Q6ZMN7 1036 aaPredicted RBP20.49■□□□□ 0.87
SHANK1-201ENST00000293441 ABCF2Q9UG63 623 aa20.49■□□□□ 0.87
SHANK1-201ENST00000293441 ME1P48163 572 aa20.48■□□□□ 0.87
SHANK1-201ENST00000293441 TMPOP42166 694 aaKnown RBP20.48■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms