RNA–Protein interactions for RNA: ENST00000287008.7

PCDH1-201, Transcript of protocadherin 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene PCDH1, Length 4,793 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-201ENST00000287008 NACAP1Q9BZK3 213 aa22.26■■□□□ 1.15
PCDH1-201ENST00000287008 PDZRN3Q9UPQ7 1066 aa22.26■■□□□ 1.15
PCDH1-201ENST00000287008 LRRCC1Q9C099 1032 aa22.26■■□□□ 1.15
PCDH1-201ENST00000287008 ABCC5O15440 1437 aa22.25■■□□□ 1.15
PCDH1-201ENST00000287008 WASLO00401 505 aaPredicted RBP22.25■■□□□ 1.15
PCDH1-201ENST00000287008 TMPOP42166 694 aaKnown RBP22.25■■□□□ 1.15
PCDH1-201ENST00000287008 CCAR1Q8IX12 1150 aaKnown RBP22.25■■□□□ 1.15
PCDH1-201ENST00000287008 ANO8Q9HCE9 1232 aaPredicted RBP22.25■■□□□ 1.15
PCDH1-201ENST00000287008 ZNF608Q9ULD9 1512 aaPredicted RBP22.25■■□□□ 1.15
PCDH1-201ENST00000287008 CUL7Q14999 1698 aa22.24■■□□□ 1.15
PCDH1-201ENST00000287008 SRGAP3O43295 1099 aa22.24■■□□□ 1.15
PCDH1-201ENST00000287008 TMOD3Q9NYL9 352 aa22.24■■□□□ 1.15
PCDH1-201ENST00000287008 NGLY1Q96IV0 654 aa22.23■■□□□ 1.15
PCDH1-201ENST00000287008 NEK4P51957 841 aa22.23■■□□□ 1.15
PCDH1-201ENST00000287008 AMOTQ4VCS5 1084 aa22.23■■□□□ 1.15
PCDH1-201ENST00000287008 FANCAO15360 1455 aa22.23■■□□□ 1.15
PCDH1-201ENST00000287008 ADGRF5Q8IZF2 1346 aa22.23■■□□□ 1.15
PCDH1-201ENST00000287008 NME9Q86XW9 330 aa22.23■■□□□ 1.15
PCDH1-201ENST00000287008 KIF14Q15058 1648 aa22.22■■□□□ 1.15
PCDH1-201ENST00000287008 URB2Q14146 1524 aaKnown RBP22.22■■□□□ 1.15
PCDH1-201ENST00000287008 BICDL1Q6ZP65 573 aa22.22■■□□□ 1.15
PCDH1-201ENST00000287008 R3HCC1Q9Y3T6 440 aaKnown RBP22.22■■□□□ 1.15
PCDH1-201ENST00000287008 GOLGA6L1Q8N7Z2 621 aa22.22■■□□□ 1.15
PCDH1-201ENST00000287008 PDCP20941 246 aa22.21■■□□□ 1.15
PCDH1-201ENST00000287008 SASS6Q6UVJ0 657 aa22.21■■□□□ 1.15
PCDH1-201ENST00000287008 CADPS2Q86UW7 1296 aa22.21■■□□□ 1.15
PCDH1-201ENST00000287008 ATP2B1P20020 1258 aa22.2■■□□□ 1.14
PCDH1-201ENST00000287008 MCM2P49736 904 aa22.2■■□□□ 1.14
PCDH1-201ENST00000287008 ZNF652Q9Y2D9 606 aa22.2■■□□□ 1.14
PCDH1-201ENST00000287008 ATP2B2Q01814 1243 aa22.2■■□□□ 1.14
PCDH1-201ENST00000287008 NCOA1Q15788 1441 aa22.2■■□□□ 1.14
PCDH1-201ENST00000287008 ZSCAN25Q6NSZ9 544 aa22.2■■□□□ 1.14
PCDH1-201ENST00000287008 SDF4Q9BRK5 362 aa22.2■■□□□ 1.14
PCDH1-201ENST00000287008 IGHMBP2P38935 993 aaKnown RBP22.19■■□□□ 1.14
PCDH1-201ENST00000287008 MVPQ14764 893 aaKnown RBP22.18■■□□□ 1.14
PCDH1-201ENST00000287008 DHX29Q7Z478 1369 aaKnown RBP22.18■■□□□ 1.14
PCDH1-201ENST00000287008 FKBP4Q02790 459 aaKnown RBP eCLIP22.18■■□□□ 1.14
PCDH1-201ENST00000287008 DUSP27Q5VZP5 1158 aa22.17■■□□□ 1.14
PCDH1-201ENST00000287008 CNKSR2Q8WXI2 1034 aa22.17■■□□□ 1.14
PCDH1-201ENST00000287008 RBM5P52756 815 aaKnown RBP eCLIP22.17■■□□□ 1.14
PCDH1-201ENST00000287008 MCM10Q7L590 875 aa22.17■■□□□ 1.14
PCDH1-201ENST00000287008 CCAR2Q8N163 923 aaKnown RBP22.17■■□□□ 1.14
PCDH1-201ENST00000287008 AACSQ86V21 672 aa22.17■■□□□ 1.14
PCDH1-201ENST00000287008 THUMPD2Q9BTF0 503 aaKnown RBP22.17■■□□□ 1.14
PCDH1-201ENST00000287008 LRPPRCP42704 1394 aaKnown RBP22.17■■□□□ 1.14
PCDH1-201ENST00000287008 PCF11O94913 1555 aaKnown RBP22.17■■□□□ 1.14
PCDH1-201ENST00000287008 TAF7Q15545 349 aaPredicted RBP22.16■■□□□ 1.14
PCDH1-201ENST00000287008 KRT28Q7Z3Y7 464 aa22.16■■□□□ 1.14
PCDH1-201ENST00000287008 RPAP2Q8IXW5 612 aaPredicted RBP22.16■■□□□ 1.14
PCDH1-201ENST00000287008 CCDC85AQ96PX6 553 aaPredicted RBP22.16■■□□□ 1.14
PCDH1-201ENST00000287008 KDM4AO75164 1064 aa22.15■■□□□ 1.14
PCDH1-201ENST00000287008 MIS18AQ9NYP9 233 aa22.15■■□□□ 1.14
PCDH1-201ENST00000287008 RABEP1Q15276 862 aa22.15■■□□□ 1.14
PCDH1-201ENST00000287008 LARP1Q6PKG0 1096 aaKnown RBP22.15■■□□□ 1.14
PCDH1-201ENST00000287008 EXOC5O00471 708 aa22.15■■□□□ 1.14
PCDH1-201ENST00000287008 ZPR1O75312 459 aa22.15■■□□□ 1.14
PCDH1-201ENST00000287008 USHBP1Q8N6Y0 703 aa22.15■■□□□ 1.14
PCDH1-201ENST00000287008 EMILIN1Q9Y6C2 1016 aa22.15■■□□□ 1.14
PCDH1-201ENST00000287008 MPRIPQ6WCQ1 1025 aa22.14■■□□□ 1.14
PCDH1-201ENST00000287008 CCDC70Q6NSX1 233 aa22.13■■□□□ 1.13
PCDH1-201ENST00000287008 ZSCAN29Q8IWY8 852 aaPredicted RBP22.12■■□□□ 1.13
PCDH1-201ENST00000287008 TRIM22Q8IYM9 498 aa22.12■■□□□ 1.13
PCDH1-201ENST00000287008 CYP46A1Q9Y6A2 500 aa22.12■■□□□ 1.13
PCDH1-201ENST00000287008 DCTN1Q14203 1278 aa22.12■■□□□ 1.13
PCDH1-201ENST00000287008 ARID3AQ99856 593 aa22.12■■□□□ 1.13
PCDH1-201ENST00000287008 IL1RAPL2Q9NP60 686 aa22.12■■□□□ 1.13
PCDH1-201ENST00000287008 RAI14Q9P0K7 980 aa22.12■■□□□ 1.13
PCDH1-201ENST00000287008 GSE1Q14687 1217 aa22.12■■□□□ 1.13
PCDH1-201ENST00000287008 LRP2BPQ9P2M1 347 aa22.12■■□□□ 1.13
PCDH1-201ENST00000287008 C14orf93Q9H972 538 aaKnown RBP22.11■■□□□ 1.13
PCDH1-201ENST00000287008 TNRQ92752 1358 aa22.11■■□□□ 1.13
PCDH1-201ENST00000287008 TXLNAP40222 546 aa22.1■■□□□ 1.13
PCDH1-201ENST00000287008 NOS1P29475 1434 aa22.1■■□□□ 1.13
PCDH1-201ENST00000287008 CTNNA3Q9UI47 895 aa22.09■■□□□ 1.13
PCDH1-201ENST00000287008 OFD1O75665 1012 aa22.09■■□□□ 1.13
PCDH1-201ENST00000287008 METTL24Q5JXM2 366 aa22.09■■□□□ 1.13
PCDH1-201ENST00000287008 OLFM4Q6UX06 510 aa22.09■■□□□ 1.13
PCDH1-201ENST00000287008 TMOD2Q9NZR1 351 aa22.09■■□□□ 1.13
PCDH1-201ENST00000287008 CDK5RAP3Q96JB5 506 aa22.09■■□□□ 1.13
PCDH1-201ENST00000287008 ANKRD1Q15327 319 aa22.08■■□□□ 1.13
PCDH1-201ENST00000287008 IFT57Q9NWB7 429 aa22.08■■□□□ 1.13
PCDH1-201ENST00000287008 ABCF2Q9UG63 623 aa22.08■■□□□ 1.13
PCDH1-201ENST00000287008 ABCC11Q96J66 1382 aa22.08■■□□□ 1.13
PCDH1-201ENST00000287008 IDH1O75874 414 aaKnown RBP22.08■■□□□ 1.13
PCDH1-201ENST00000287008 TDO2P48775 406 aa22.08■■□□□ 1.13
PCDH1-201ENST00000287008 PTPN23Q9H3S7 1636 aa22.08■■□□□ 1.13
PCDH1-201ENST00000287008 STK11IPQ8N1F8 1099 aa22.08■■□□□ 1.13
PCDH1-201ENST00000287008 SLFN5Q08AF3 891 aa22.08■■□□□ 1.12
PCDH1-201ENST00000287008 CHD1LQ86WJ1 897 aa22.07■■□□□ 1.12
PCDH1-201ENST00000287008 FANCIQ9NVI1 1328 aa22.07■■□□□ 1.12
PCDH1-201ENST00000287008 KINO60870 393 aaKnown RBP22.07■■□□□ 1.12
PCDH1-201ENST00000287008 HSP90AB3PQ58FF7 597 aa22.07■■□□□ 1.12
PCDH1-201ENST00000287008 NAT10Q9H0A0 1025 aaKnown RBP22.07■■□□□ 1.12
PCDH1-201ENST00000287008 HOMER1Q86YM7 354 aa22.07■■□□□ 1.12
PCDH1-201ENST00000287008 EPS15P42566 896 aa22.06■■□□□ 1.12
PCDH1-201ENST00000287008 IFIT1P09914 478 aaKnown RBP22.06■■□□□ 1.12
PCDH1-201ENST00000287008 STK38Q15208 465 aa22.06■■□□□ 1.12
PCDH1-201ENST00000287008 CCDC184Q52MB2 194 aa22.06■■□□□ 1.12
PCDH1-201ENST00000287008 CT47A1Q5JQC4 288 aaPredicted RBP22.06■■□□□ 1.12
PCDH1-201ENST00000287008 JMYQ8N9B5 988 aa22.06■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms