RNA–Protein interactions for RNA: ENST00000273317.4

LIMD1-201, Transcript of LIM domains containing 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIMD1, Length 11,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1-201ENST00000273317 NECTIN2Q92692 538 aa9.42□□□□□ -0.9
LIMD1-201ENST00000273317 SLC26A8Q96RN1 970 aa9.42□□□□□ -0.9
LIMD1-201ENST00000273317 NOL7Q9UMY1 257 aaKnown RBP9.42□□□□□ -0.9
LIMD1-201ENST00000273317 PRPF40AO75400 957 aaKnown RBP9.42□□□□□ -0.9
LIMD1-201ENST00000273317 CCDC27Q2M243 656 aa9.42□□□□□ -0.9
LIMD1-201ENST00000273317 GRPEL1Q9HAV7 217 aa9.42□□□□□ -0.9
LIMD1-201ENST00000273317 DESP17661 470 aa9.42□□□□□ -0.9
LIMD1-201ENST00000273317 KRT32Q14532 448 aa9.42□□□□□ -0.9
LIMD1-201ENST00000273317 WDR63Q8IWG1 891 aa9.42□□□□□ -0.9
LIMD1-201ENST00000273317 ZSCAN25Q6NSZ9 544 aa9.42□□□□□ -0.9
LIMD1-201ENST00000273317 FAM135AQ9P2D6 1515 aa9.41□□□□□ -0.9
LIMD1-201ENST00000273317 UQCRHLA0A096LP55 91 aa9.41□□□□□ -0.9
LIMD1-201ENST00000273317 UQCRHP07919 91 aa9.41□□□□□ -0.9
LIMD1-201ENST00000273317 ENOX2Q16206 610 aaKnown RBP9.41□□□□□ -0.9
LIMD1-201ENST00000273317 MAP9Q49MG5 647 aa9.41□□□□□ -0.9
LIMD1-201ENST00000273317 DEF6Q9H4E7 631 aa9.41□□□□□ -0.9
LIMD1-201ENST00000273317 ERBINQ96RT1 1412 aa9.41□□□□□ -0.9
LIMD1-201ENST00000273317 NUTM2FA1L443 756 aa9.41□□□□□ -0.9
LIMD1-201ENST00000273317 SMTNL1A8MU46 457 aa9.41□□□□□ -0.9
LIMD1-201ENST00000273317 PNISRQ8TF01 805 aaKnown RBP9.41□□□□□ -0.9
LIMD1-201ENST00000273317 GBP3Q9H0R5 595 aa9.41□□□□□ -0.9
LIMD1-201ENST00000273317 BRPF3Q9ULD4 1205 aa9.41□□□□□ -0.9
LIMD1-201ENST00000273317 TTC39AQ5SRH9 613 aa9.41□□□□□ -0.9
LIMD1-201ENST00000273317 MPNDQ8N594 471 aa9.41□□□□□ -0.9
LIMD1-201ENST00000273317 KIAA1107Q9UPP5 1409 aa9.41□□□□□ -0.9
LIMD1-201ENST00000273317 KDM4AO75164 1064 aa9.41□□□□□ -0.9
LIMD1-201ENST00000273317 PPP6R1Q9UPN7 881 aa9.41□□□□□ -0.9
LIMD1-201ENST00000273317 ME1P48163 572 aa9.41□□□□□ -0.9
LIMD1-201ENST00000273317 PRDM10Q9NQV6 1147 aa9.41□□□□□ -0.9
LIMD1-201ENST00000273317 ZNF428Q96B54 188 aa9.4□□□□□ -0.9
LIMD1-201ENST00000273317 PLEKHO1Q53GL0 409 aaPredicted RBP9.4□□□□□ -0.9
LIMD1-201ENST00000273317 LRRCC1Q9C099 1032 aa9.4□□□□□ -0.9
LIMD1-201ENST00000273317 FAM107BQ9H098 131 aa9.4□□□□□ -0.9
LIMD1-201ENST00000273317 PDZRN3Q9UPQ7 1066 aa9.4□□□□□ -0.9
LIMD1-201ENST00000273317 CCDC158Q5M9N0 1113 aa9.4□□□□□ -0.9
LIMD1-201ENST00000273317 TMEM132AQ24JP5 1023 aa9.4□□□□□ -0.91
LIMD1-201ENST00000273317 CTNNA3Q9UI47 895 aa9.4□□□□□ -0.91
LIMD1-201ENST00000273317 CCDC57Q2TAC2 916 aa9.4□□□□□ -0.91
LIMD1-201ENST00000273317 JAKMIP3Q5VZ66 844 aa9.4□□□□□ -0.91
LIMD1-201ENST00000273317 MSH5O43196 834 aa9.39□□□□□ -0.91
LIMD1-201ENST00000273317 SURF6O75683 361 aaKnown RBP9.39□□□□□ -0.91
LIMD1-201ENST00000273317 CCDC148Q8NFR7 591 aa9.39□□□□□ -0.91
LIMD1-201ENST00000273317 PTPN23Q9H3S7 1636 aa9.39□□□□□ -0.91
LIMD1-201ENST00000273317 HMOX1P09601 288 aa9.39□□□□□ -0.91
LIMD1-201ENST00000273317 PPP2R1AP30153 589 aa9.39□□□□□ -0.91
LIMD1-201ENST00000273317 ZFP91Q96JP5 570 aaPredicted RBP9.39□□□□□ -0.91
LIMD1-201ENST00000273317 CEP131Q9UPN4 1083 aa9.39□□□□□ -0.91
LIMD1-201ENST00000273317 RUSC2Q8N2Y8 1516 aa9.39□□□□□ -0.91
LIMD1-201ENST00000273317 ATF3P18847 181 aa9.39□□□□□ -0.91
LIMD1-201ENST00000273317 KIF14Q15058 1648 aa9.39□□□□□ -0.91
LIMD1-201ENST00000273317 CCDC69A6NI79 296 aa9.39□□□□□ -0.91
LIMD1-201ENST00000273317 SYTL4Q96C24 671 aaPredicted RBP9.39□□□□□ -0.91
LIMD1-201ENST00000273317 FYB1O15117 783 aa9.39□□□□□ -0.91
LIMD1-201ENST00000273317 SPC24Q8NBT2 197 aa9.38□□□□□ -0.91
LIMD1-201ENST00000273317 ADAMTS8Q9UP79 889 aa9.38□□□□□ -0.91
LIMD1-201ENST00000273317 DNAI2Q9GZS0 605 aa9.38□□□□□ -0.91
LIMD1-201ENST00000273317 NEFHP12036 1026 aa9.38□□□□□ -0.91
LIMD1-201ENST00000273317 CCDC91Q7Z6B0 441 aa9.38□□□□□ -0.91
LIMD1-201ENST00000273317 IKQ13123 557 aaPredicted RBP9.38□□□□□ -0.91
LIMD1-201ENST00000273317 TCP11L2Q8N4U5 519 aa9.38□□□□□ -0.91
LIMD1-201ENST00000273317 SPATA32Q96LK8 384 aa9.38□□□□□ -0.91
LIMD1-201ENST00000273317 DNAJC2Q99543 621 aaKnown RBP9.38□□□□□ -0.91
LIMD1-201ENST00000273317 IL27Q8NEV9 243 aa9.38□□□□□ -0.91
LIMD1-201ENST00000273317 NUP62CLQ9H1M0 184 aa9.38□□□□□ -0.91
LIMD1-201ENST00000273317 BACH2Q9BYV9 841 aa9.38□□□□□ -0.91
LIMD1-201ENST00000273317 POTEB2H3BUK9 544 aa9.38□□□□□ -0.91
LIMD1-201ENST00000273317 GRIN2BQ13224 1484 aa9.38□□□□□ -0.91
LIMD1-201ENST00000273317 AKNAQ7Z591 1439 aa9.38□□□□□ -0.91
LIMD1-201ENST00000273317 TRIM21P19474 475 aaKnown RBP9.38□□□□□ -0.91
LIMD1-201ENST00000273317 ZNF397Q8NF99 534 aaPredicted RBP9.38□□□□□ -0.91
LIMD1-201ENST00000273317 PHAXQ9H814 394 aaKnown RBP9.37□□□□□ -0.91
LIMD1-201ENST00000273317 TAF4BQ92750 862 aa9.37□□□□□ -0.91
LIMD1-201ENST00000273317 ITSN2Q9NZM3 1697 aa9.37□□□□□ -0.91
LIMD1-201ENST00000273317 ERICH4A6NGS2 130 aa9.37□□□□□ -0.91
LIMD1-201ENST00000273317 MVPQ14764 893 aaKnown RBP9.37□□□□□ -0.91
LIMD1-201ENST00000273317 BMP2KQ9NSY1 1161 aaPredicted RBP9.37□□□□□ -0.91
LIMD1-201ENST00000273317 NOB1Q9ULX3 412 aaKnown RBP9.37□□□□□ -0.91
LIMD1-201ENST00000273317 HMGB2P26583 209 aaKnown RBP9.37□□□□□ -0.91
LIMD1-201ENST00000273317 ZSCAN12O43309 604 aa9.37□□□□□ -0.91
LIMD1-201ENST00000273317 BRPF1P55201 1214 aaPredicted RBP9.37□□□□□ -0.91
LIMD1-201ENST00000273317 TWISTNBQ3B726 338 aaPredicted RBP9.37□□□□□ -0.91
LIMD1-201ENST00000273317 NLRP2Q9NX02 1062 aa9.37□□□□□ -0.91
LIMD1-201ENST00000273317 WDR97A6NE52 1622 aa9.37□□□□□ -0.91
LIMD1-201ENST00000273317 SYNJ1O43426 1573 aa9.37□□□□□ -0.91
LIMD1-201ENST00000273317 IMMTQ16891 758 aaKnown RBP9.37□□□□□ -0.91
LIMD1-201ENST00000273317 FMNL2Q96PY5 1086 aa9.37□□□□□ -0.91
LIMD1-201ENST00000273317 EPB41L2O43491 1005 aaKnown RBP9.37□□□□□ -0.91
LIMD1-201ENST00000273317 POTEJP0CG39 1038 aa9.36□□□□□ -0.91
LIMD1-201ENST00000273317 MAP3K11Q16584 847 aa9.36□□□□□ -0.91
LIMD1-201ENST00000273317 LARP1BQ659C4 914 aaKnown RBP9.36□□□□□ -0.91
LIMD1-201ENST00000273317 DDX11Q96FC9 970 aa9.36□□□□□ -0.91
LIMD1-201ENST00000273317 UPF3BQ9BZI7 483 aaKnown RBP9.36□□□□□ -0.91
LIMD1-201ENST00000273317 TNNT1P13805 278 aa9.36□□□□□ -0.91
LIMD1-201ENST00000273317 PPP1R12BO60237 982 aaPredicted RBP9.36□□□□□ -0.91
LIMD1-201ENST00000273317 AIMP1Q12904 312 aaKnown RBP9.36□□□□□ -0.91
LIMD1-201ENST00000273317 KIAA1328Q86T90 577 aa9.36□□□□□ -0.91
LIMD1-201ENST00000273317 PDRG1Q9NUG6 133 aa9.36□□□□□ -0.91
LIMD1-201ENST00000273317 NEMFO60524 1076 aa9.36□□□□□ -0.91
LIMD1-201ENST00000273317 ZSCAN30Q86W11 494 aa9.36□□□□□ -0.91
LIMD1-201ENST00000273317 TRERF1Q96PN7 1200 aa9.36□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 63.8 ms