RNA–Protein interactions for RNA: ENST00000269137.11

SS18-201, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SS18, Length 1,836 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-201ENST00000269137 DDX17Q92841 729 aaKnown RBP18.56■□□□□ 0.56
SS18-201ENST00000269137 PHRF1Q9P1Y6 1649 aaKnown RBP18.55■□□□□ 0.56
SS18-201ENST00000269137 GCP02774 474 aa18.55■□□□□ 0.56
SS18-201ENST00000269137 RGPD1P0DJD0 1748 aa18.55■□□□□ 0.56
SS18-201ENST00000269137 TNS3Q68CZ2 1445 aa18.55■□□□□ 0.56
SS18-201ENST00000269137 PRKAR2BP31323 418 aa18.54■□□□□ 0.56
SS18-201ENST00000269137 TMPOP42166 694 aaKnown RBP18.54■□□□□ 0.56
SS18-201ENST00000269137 LMOD2Q6P5Q4 547 aa18.54■□□□□ 0.56
SS18-201ENST00000269137 SUPT16HQ9Y5B9 1047 aaKnown RBP18.54■□□□□ 0.56
SS18-201ENST00000269137 LTN1O94822 1766 aa18.54■□□□□ 0.56
SS18-201ENST00000269137 NEFMP07197 916 aa18.53■□□□□ 0.56
SS18-201ENST00000269137 SLFN5Q08AF3 891 aa18.53■□□□□ 0.56
SS18-201ENST00000269137 TRMT2AQ8IZ69 625 aaKnown RBP18.53■□□□□ 0.56
SS18-201ENST00000269137 IP6K1Q92551 441 aa18.53■□□□□ 0.56
SS18-201ENST00000269137 RRP7AQ9Y3A4 280 aaKnown RBP18.53■□□□□ 0.56
SS18-201ENST00000269137 SPATA31A3Q5VYP0 1347 aa18.53■□□□□ 0.56
SS18-201ENST00000269137 ARHGEF10O15013 1369 aa18.53■□□□□ 0.56
SS18-201ENST00000269137 HMOX1P09601 288 aa18.53■□□□□ 0.56
SS18-201ENST00000269137 SOS2Q07890 1332 aaPredicted RBP18.53■□□□□ 0.56
SS18-201ENST00000269137 WDR63Q8IWG1 891 aa18.53■□□□□ 0.56
SS18-201ENST00000269137 ARHGEF25Q86VW2 580 aa18.52■□□□□ 0.56
SS18-201ENST00000269137 E9PSI1 815 aa18.51■□□□□ 0.55
SS18-201ENST00000269137 NEUROD2Q15784 382 aa18.51■□□□□ 0.55
SS18-201ENST00000269137 DUSP27Q5VZP5 1158 aa18.51■□□□□ 0.55
SS18-201ENST00000269137 MED1Q15648 1581 aaPredicted RBP18.51■□□□□ 0.55
SS18-201ENST00000269137 SULT6B1Q6IMI4 303 aa18.5■□□□□ 0.55
SS18-201ENST00000269137 KDRP35968 1356 aa18.5■□□□□ 0.55
SS18-201ENST00000269137 IGSF1Q8N6C5 1336 aa18.49■□□□□ 0.55
SS18-201ENST00000269137 PHACTR3Q96KR7 559 aa18.49■□□□□ 0.55
SS18-201ENST00000269137 NEFLP07196 543 aa18.49■□□□□ 0.55
SS18-201ENST00000269137 NFE2L2Q16236 605 aa18.49■□□□□ 0.55
SS18-201ENST00000269137 AEBP1Q8IUX7 1158 aa18.48■□□□□ 0.55
SS18-201ENST00000269137 EYA1Q99502 592 aa18.48■□□□□ 0.55
SS18-201ENST00000269137 SPINK5Q9NQ38 1064 aaPredicted RBP18.48■□□□□ 0.55
SS18-201ENST00000269137 TRIM35Q9UPQ4 493 aa18.48■□□□□ 0.55
SS18-201ENST00000269137 NHSL1Q5SYE7 1610 aa18.48■□□□□ 0.55
SS18-201ENST00000269137 RNF123Q5XPI4 1314 aa18.47■□□□□ 0.55
SS18-201ENST00000269137 RIPK4P57078 832 aa18.47■□□□□ 0.55
SS18-201ENST00000269137 RCAN3Q9UKA8 241 aa18.46■□□□□ 0.55
SS18-201ENST00000269137 CRYBG1Q9Y4K1 1723 aa18.45■□□□□ 0.54
SS18-201ENST00000269137 IL16Q14005 1332 aa18.45■□□□□ 0.54
SS18-201ENST00000269137 FKBP8Q14318 412 aa18.42■□□□□ 0.54
SS18-201ENST00000269137 CPDO75976 1380 aa18.42■□□□□ 0.54
SS18-201ENST00000269137 ABCC6O95255 1503 aa18.42■□□□□ 0.54
SS18-201ENST00000269137 LMOD3Q0VAK6 560 aa18.42■□□□□ 0.54
SS18-201ENST00000269137 LTV1Q96GA3 475 aaPredicted RBP18.42■□□□□ 0.54
SS18-201ENST00000269137 ZBTB7CA1YPR0 619 aa18.41■□□□□ 0.54
SS18-201ENST00000269137 PLEKHG5O94827 1062 aa18.41■□□□□ 0.54
SS18-201ENST00000269137 ZC3H6P61129 1189 aaKnown RBP18.41■□□□□ 0.54
SS18-201ENST00000269137 MYH16Q9H6N6 1097 aa18.41■□□□□ 0.54
SS18-201ENST00000269137 CABLES1Q8TDN4 633 aa18.4■□□□□ 0.54
SS18-201ENST00000269137 DLG5Q8TDM6 1919 aa18.4■□□□□ 0.54
SS18-201ENST00000269137 ROBO1Q9Y6N7 1651 aa18.39■□□□□ 0.54
SS18-201ENST00000269137 AHDC1Q5TGY3 1603 aaPredicted RBP18.39■□□□□ 0.53
SS18-201ENST00000269137 CALD1Q05682 793 aaKnown RBP18.39■□□□□ 0.53
SS18-201ENST00000269137 AXIN2Q9Y2T1 843 aa18.39■□□□□ 0.53
SS18-201ENST00000269137 COL18A1P39060 1754 aa18.39■□□□□ 0.53
SS18-201ENST00000269137 NCAPD2Q15021 1401 aa18.38■□□□□ 0.53
SS18-201ENST00000269137 NBPF6Q5VWK0 638 aa18.38■□□□□ 0.53
SS18-201ENST00000269137 ERICH6BQ5W0A0 696 aa18.38■□□□□ 0.53
SS18-201ENST00000269137 AEBP2Q6ZN18 517 aaPredicted RBP18.38■□□□□ 0.53
SS18-201ENST00000269137 NBPF4Q96M43 638 aa18.38■□□□□ 0.53
SS18-201ENST00000269137 ANKRD24Q8TF21 1146 aa18.37■□□□□ 0.53
SS18-201ENST00000269137 GAS2L2Q8NHY3 880 aa18.36■□□□□ 0.53
SS18-201ENST00000269137 KIAA0232Q92628 1395 aa18.36■□□□□ 0.53
SS18-201ENST00000269137 RGPD5Q99666 1765 aa18.36■□□□□ 0.53
SS18-201ENST00000269137 RRP1P56182 461 aaKnown RBP18.35■□□□□ 0.53
SS18-201ENST00000269137 LRRC59Q96AG4 307 aaKnown RBP18.35■□□□□ 0.53
SS18-201ENST00000269137 ERBB3P21860 1342 aa18.35■□□□□ 0.53
SS18-201ENST00000269137 CAMTA1Q9Y6Y1 1673 aa18.35■□□□□ 0.53
SS18-201ENST00000269137 MTHFSDQ2M296 383 aaKnown RBP18.35■□□□□ 0.53
SS18-201ENST00000269137 RGPD2P0DJD1 1756 aa18.34■□□□□ 0.53
SS18-201ENST00000269137 FANCIQ9NVI1 1328 aa18.34■□□□□ 0.53
SS18-201ENST00000269137 TOM1O60784 492 aa18.34■□□□□ 0.53
SS18-201ENST00000269137 ABCA3Q99758 1704 aa18.34■□□□□ 0.53
SS18-201ENST00000269137 USHBP1Q8N6Y0 703 aa18.33■□□□□ 0.53
SS18-201ENST00000269137 HTATSF1O43719 755 aaKnown RBP18.33■□□□□ 0.52
SS18-201ENST00000269137 CT47B1P0C2W7 299 aaPredicted RBP18.33■□□□□ 0.52
SS18-201ENST00000269137 IFT57Q9NWB7 429 aa18.33■□□□□ 0.52
SS18-201ENST00000269137 LMO7Q8WWI1 1683 aa18.32■□□□□ 0.52
SS18-201ENST00000269137 ZNF853P0CG23 659 aa18.32■□□□□ 0.52
SS18-201ENST00000269137 GNAI1P63096 354 aa18.32■□□□□ 0.52
SS18-201ENST00000269137 IRX6P78412 446 aaPredicted RBP18.31■□□□□ 0.52
SS18-201ENST00000269137 THUMPD2Q9BTF0 503 aaKnown RBP18.31■□□□□ 0.52
SS18-201ENST00000269137 FAM208AQ9UK61 1670 aaKnown RBP18.3■□□□□ 0.52
SS18-201ENST00000269137 FAM83GA6ND36 823 aa18.3■□□□□ 0.52
SS18-201ENST00000269137 CHRNA2Q15822 529 aa18.3■□□□□ 0.52
SS18-201ENST00000269137 TSR2Q969E8 191 aaKnown RBP18.3■□□□□ 0.52
SS18-201ENST00000269137 HAP1P54257 671 aaPredicted RBP18.3■□□□□ 0.52
SS18-201ENST00000269137 CFAP44Q96MT7 982 aa18.3■□□□□ 0.52
SS18-201ENST00000269137 PRDM11Q9NQV5 511 aa18.3■□□□□ 0.52
SS18-201ENST00000269137 DCTN1Q14203 1278 aa18.28■□□□□ 0.52
SS18-201ENST00000269137 RTF1Q92541 710 aaKnown RBP18.28■□□□□ 0.52
SS18-201ENST00000269137 COL22A1Q8NFW1 1626 aaPredicted RBP18.28■□□□□ 0.52
SS18-201ENST00000269137 GNAT3A8MTJ3 354 aa18.27■□□□□ 0.52
SS18-201ENST00000269137 EXOSC9Q06265 439 aaKnown RBP18.27■□□□□ 0.52
SS18-201ENST00000269137 AMOTQ4VCS5 1084 aa18.27■□□□□ 0.52
SS18-201ENST00000269137 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.27■□□□□ 0.52
SS18-201ENST00000269137 PLEKHG2Q9H7P9 1386 aa18.27■□□□□ 0.52
SS18-201ENST00000269137 RARSP54136 660 aaKnown RBP18.26■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms