RNA–Protein interactions for RNA: ENST00000265044.6

SSR3-201, Transcript of signal sequence receptor subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SSR3, Length 3,716 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSR3-201ENST00000265044 DZIP1LQ8IYY4 767 aaKnown RBP11.86□□□□□ -0.51
SSR3-201ENST00000265044 USP6P35125 1406 aa11.86□□□□□ -0.51
SSR3-201ENST00000265044 TMEM94Q12767 1356 aa11.86□□□□□ -0.51
SSR3-201ENST00000265044 TWISTNBQ3B726 338 aaPredicted RBP11.86□□□□□ -0.51
SSR3-201ENST00000265044 USP35Q9P2H5 1018 aa11.86□□□□□ -0.51
SSR3-201ENST00000265044 GCP02774 474 aa11.86□□□□□ -0.51
SSR3-201ENST00000265044 SLC4A10Q6U841 1118 aa11.86□□□□□ -0.51
SSR3-201ENST00000265044 RARSP54136 660 aaKnown RBP11.85□□□□□ -0.51
SSR3-201ENST00000265044 PRDM11Q9NQV5 511 aa11.85□□□□□ -0.51
SSR3-201ENST00000265044 C3P01024 1663 aa11.85□□□□□ -0.51
SSR3-201ENST00000265044 TSHZ2Q9NRE2 1034 aa11.85□□□□□ -0.51
SSR3-201ENST00000265044 FLT4P35916 1363 aa11.85□□□□□ -0.51
SSR3-201ENST00000265044 ANP32AP39687 249 aaKnown RBP11.85□□□□□ -0.51
SSR3-201ENST00000265044 CCDC27Q2M243 656 aa11.85□□□□□ -0.51
SSR3-201ENST00000265044 EYA1Q99502 592 aa11.85□□□□□ -0.51
SSR3-201ENST00000265044 CHRNA2Q15822 529 aa11.84□□□□□ -0.51
SSR3-201ENST00000265044 TECPR2O15040 1411 aa11.84□□□□□ -0.51
SSR3-201ENST00000265044 NPHP3Q7Z494 1330 aa11.84□□□□□ -0.51
SSR3-201ENST00000265044 EIF2S2P20042 333 aaKnown RBP11.84□□□□□ -0.51
SSR3-201ENST00000265044 ARXQ96QS3 562 aa11.84□□□□□ -0.51
SSR3-201ENST00000265044 STRN4Q9NRL3 753 aa11.84□□□□□ -0.51
SSR3-201ENST00000265044 INSRP06213 1382 aa11.84□□□□□ -0.51
SSR3-201ENST00000265044 HOXC9P31274 260 aa11.84□□□□□ -0.51
SSR3-201ENST00000265044 ZNF530Q6P9A1 599 aaPredicted RBP11.84□□□□□ -0.51
SSR3-201ENST00000265044 PLEKHO1Q53GL0 409 aaPredicted RBP11.83□□□□□ -0.52
SSR3-201ENST00000265044 NOB1Q9ULX3 412 aaKnown RBP11.83□□□□□ -0.52
SSR3-201ENST00000265044 UBR1Q8IWV7 1749 aa11.83□□□□□ -0.52
SSR3-201ENST00000265044 SSH1Q8WYL5 1049 aa11.83□□□□□ -0.52
SSR3-201ENST00000265044 CHMP4BQ9H444 224 aaKnown RBP11.83□□□□□ -0.52
SSR3-201ENST00000265044 MYT1Q01538 1121 aa11.83□□□□□ -0.52
SSR3-201ENST00000265044 LRRC59Q96AG4 307 aaKnown RBP11.83□□□□□ -0.52
SSR3-201ENST00000265044 TRIM35Q9UPQ4 493 aa11.83□□□□□ -0.52
SSR3-201ENST00000265044 MYO3AQ8NEV4 1616 aa11.82□□□□□ -0.52
SSR3-201ENST00000265044 CPSF1Q10570 1443 aaKnown RBP11.82□□□□□ -0.52
SSR3-201ENST00000265044 KIF16BQ96L93 1317 aa11.82□□□□□ -0.52
SSR3-201ENST00000265044 CCDC9Q9Y3X0 531 aaKnown RBP11.82□□□□□ -0.52
SSR3-201ENST00000265044 PDE3AQ14432 1141 aa11.82□□□□□ -0.52
SSR3-201ENST00000265044 RWDD1Q9H446 243 aaPredicted RBP11.82□□□□□ -0.52
SSR3-201ENST00000265044 GNAT3A8MTJ3 354 aa11.82□□□□□ -0.52
SSR3-201ENST00000265044 RBM19Q9Y4C8 960 aaKnown RBP11.82□□□□□ -0.52
SSR3-201ENST00000265044 PTCH1Q13635 1447 aa11.81□□□□□ -0.52
SSR3-201ENST00000265044 ARHGAP23Q9P227 1491 aa11.81□□□□□ -0.52
SSR3-201ENST00000265044 PIP4K2BP78356 416 aa11.81□□□□□ -0.52
SSR3-201ENST00000265044 AEBP2Q6ZN18 517 aaPredicted RBP11.81□□□□□ -0.52
SSR3-201ENST00000265044 TOM1L2Q6ZVM7 507 aa11.81□□□□□ -0.52
SSR3-201ENST00000265044 ANKRD24Q8TF21 1146 aa11.81□□□□□ -0.52
SSR3-201ENST00000265044 PLEKHF1Q96S99 279 aa11.81□□□□□ -0.52
SSR3-201ENST00000265044 IFT57Q9NWB7 429 aa11.81□□□□□ -0.52
SSR3-201ENST00000265044 SLIT1O75093 1534 aa11.81□□□□□ -0.52
SSR3-201ENST00000265044 CT47B1P0C2W7 299 aaPredicted RBP11.81□□□□□ -0.52
SSR3-201ENST00000265044 ZNF335Q9H4Z2 1342 aaPredicted RBP11.8□□□□□ -0.52
SSR3-201ENST00000265044 AATKQ6ZMQ8 1374 aa11.8□□□□□ -0.52
SSR3-201ENST00000265044 MTHFSDQ2M296 383 aaKnown RBP11.8□□□□□ -0.52
SSR3-201ENST00000265044 CFAP44Q96MT7 982 aa11.8□□□□□ -0.52
SSR3-201ENST00000265044 MBIPQ9NS73 344 aa11.8□□□□□ -0.52
SSR3-201ENST00000265044 DDX19BQ9UMR2 479 aa11.8□□□□□ -0.52
SSR3-201ENST00000265044 ZNF521Q96K83 1311 aa11.8□□□□□ -0.52
SSR3-201ENST00000265044 SBNO1A3KN83 1393 aa11.8□□□□□ -0.52
SSR3-201ENST00000265044 CENPQQ7L2Z9 268 aaPredicted RBP11.8□□□□□ -0.52
SSR3-201ENST00000265044 APBB1O00213 710 aa11.8□□□□□ -0.52
SSR3-201ENST00000265044 ATF7IPQ6VMQ6 1270 aa11.8□□□□□ -0.52
SSR3-201ENST00000265044 IP6K1Q92551 441 aa11.8□□□□□ -0.52
SSR3-201ENST00000265044 TATP17735 454 aaPredicted RBP11.79□□□□□ -0.52
SSR3-201ENST00000265044 MYOM1P52179 1685 aa11.79□□□□□ -0.52
SSR3-201ENST00000265044 SLAIN2Q9P270 581 aa11.79□□□□□ -0.52
SSR3-201ENST00000265044 CD163L1Q9NR16 1453 aa11.79□□□□□ -0.52
SSR3-201ENST00000265044 IL16Q14005 1332 aa11.78□□□□□ -0.52
SSR3-201ENST00000265044 MPRIPQ6WCQ1 1025 aa11.78□□□□□ -0.52
SSR3-201ENST00000265044 ADGRL3Q9HAR2 1447 aa11.78□□□□□ -0.52
SSR3-201ENST00000265044 SLC4A2P04920 1241 aa11.78□□□□□ -0.52
SSR3-201ENST00000265044 FKBP5Q13451 457 aaPredicted RBP11.78□□□□□ -0.52
SSR3-201ENST00000265044 API5Q9BZZ5 524 aaKnown RBP11.78□□□□□ -0.52
SSR3-201ENST00000265044 CPS1P31327 1500 aa11.77□□□□□ -0.52
SSR3-201ENST00000265044 KDM4FA0A1W2PPD8 638 aa11.77□□□□□ -0.53
SSR3-201ENST00000265044 ANKARQ7Z5J8 1434 aa11.77□□□□□ -0.53
SSR3-201ENST00000265044 TSPYL6Q8N831 410 aa11.77□□□□□ -0.53
SSR3-201ENST00000265044 ZNF330Q9Y3S2 320 aaPredicted RBP11.77□□□□□ -0.53
SSR3-201ENST00000265044 UPF2Q9HAU5 1272 aaKnown RBP11.76□□□□□ -0.53
SSR3-201ENST00000265044 TNNQ9UQP3 1299 aa11.76□□□□□ -0.53
SSR3-201ENST00000265044 KRT24Q2M2I5 525 aa11.76□□□□□ -0.53
SSR3-201ENST00000265044 NUTM2BA6NNL0 878 aaPredicted RBP11.76□□□□□ -0.53
SSR3-201ENST00000265044 NUTM2EB1AL46 878 aaPredicted RBP11.76□□□□□ -0.53
SSR3-201ENST00000265044 NBPF6Q5VWK0 638 aa11.76□□□□□ -0.53
SSR3-201ENST00000265044 NUTM2AQ8IVF1 878 aaPredicted RBP11.76□□□□□ -0.53
SSR3-201ENST00000265044 C8orf58Q8NAV2 365 aa11.76□□□□□ -0.53
SSR3-201ENST00000265044 NBPF4Q96M43 638 aa11.76□□□□□ -0.53
SSR3-201ENST00000265044 TTC5Q8N0Z6 440 aa11.75□□□□□ -0.53
SSR3-201ENST00000265044 DDX54Q8TDD1 881 aaKnown RBP11.75□□□□□ -0.53
SSR3-201ENST00000265044 CHMP4AQ9BY43 222 aa11.75□□□□□ -0.53
SSR3-201ENST00000265044 RNF123Q5XPI4 1314 aa11.75□□□□□ -0.53
SSR3-201ENST00000265044 TRIM27P14373 513 aa11.75□□□□□ -0.53
SSR3-201ENST00000265044 MVPQ14764 893 aaKnown RBP11.75□□□□□ -0.53
SSR3-201ENST00000265044 SKAP1Q86WV1 359 aa11.75□□□□□ -0.53
SSR3-201ENST00000265044 TAF7Q15545 349 aaPredicted RBP11.75□□□□□ -0.53
SSR3-201ENST00000265044 TMEM57Q8N5G2 664 aa11.75□□□□□ -0.53
SSR3-201ENST00000265044 ZNF428Q96B54 188 aa11.75□□□□□ -0.53
SSR3-201ENST00000265044 MED14O60244 1454 aa11.75□□□□□ -0.53
SSR3-201ENST00000265044 CDC42BPGQ6DT37 1551 aa11.75□□□□□ -0.53
SSR3-201ENST00000265044 HDGFL1Q5TGJ6 251 aa11.74□□□□□ -0.53
SSR3-201ENST00000265044 PNPLA6Q8IY17 1366 aa11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 9.6 ms