RNA–Protein interactions for RNA: ENST00000263351.9

ZNF541-201, Transcript of zinc finger protein 541, humanhuman

TSL 1 (best)

Gene ZNF541, Length 2,573 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541-201ENST00000263351 NFE2L2Q16236 605 aa20.68■□□□□ 0.9
ZNF541-201ENST00000263351 CHAMP1Q96JM3 812 aa20.68■□□□□ 0.9
ZNF541-201ENST00000263351 FAM135BQ49AJ0 1406 aa20.68■□□□□ 0.9
ZNF541-201ENST00000263351 DIP2CQ9Y2E4 1556 aa20.68■□□□□ 0.9
ZNF541-201ENST00000263351 HSP90AA1P07900 732 aaKnown RBP20.68■□□□□ 0.9
ZNF541-201ENST00000263351 MLECQ14165 292 aa20.67■□□□□ 0.9
ZNF541-201ENST00000263351 ALDH1L2Q3SY69 923 aa20.67■□□□□ 0.9
ZNF541-201ENST00000263351 AEBP1Q8IUX7 1158 aa20.67■□□□□ 0.9
ZNF541-201ENST00000263351 NUTM2FA1L443 756 aa20.67■□□□□ 0.9
ZNF541-201ENST00000263351 TWISTNBQ3B726 338 aaPredicted RBP20.67■□□□□ 0.9
ZNF541-201ENST00000263351 NCOA3Q9Y6Q9 1424 aa20.66■□□□□ 0.9
ZNF541-201ENST00000263351 SMARCA5O60264 1052 aaPredicted RBP20.66■□□□□ 0.9
ZNF541-201ENST00000263351 BMP2KLQ5H9B9 411 aa20.66■□□□□ 0.9
ZNF541-201ENST00000263351 GRPEL1Q9HAV7 217 aa20.66■□□□□ 0.9
ZNF541-201ENST00000263351 SOX12O15370 315 aa20.66■□□□□ 0.9
ZNF541-201ENST00000263351 MED14O60244 1454 aa20.66■□□□□ 0.9
ZNF541-201ENST00000263351 NCBP3Q53F19 620 aaKnown RBP20.65■□□□□ 0.9
ZNF541-201ENST00000263351 MAP2P11137 1827 aaKnown RBP20.65■□□□□ 0.9
ZNF541-201ENST00000263351 ARHGEF40Q8TER5 1519 aa20.64■□□□□ 0.9
ZNF541-201ENST00000263351 IL13P35225 146 aa20.64■□□□□ 0.9
ZNF541-201ENST00000263351 PKP1Q13835 747 aa20.64■□□□□ 0.9
ZNF541-201ENST00000263351 SLC52A1Q9NWF4 448 aa20.64■□□□□ 0.89
ZNF541-201ENST00000263351 TMEM131LA2VDJ0 1609 aa20.63■□□□□ 0.89
ZNF541-201ENST00000263351 TXNDC2Q86VQ3 553 aa20.63■□□□□ 0.89
ZNF541-201ENST00000263351 NAP1L5Q96NT1 182 aaPredicted RBP20.62■□□□□ 0.89
ZNF541-201ENST00000263351 CFAP74Q9C0B2 1584 aa20.62■□□□□ 0.89
ZNF541-201ENST00000263351 ANKRD26Q9UPS8 1709 aa20.62■□□□□ 0.89
ZNF541-201ENST00000263351 MIS18AQ9NYP9 233 aa20.62■□□□□ 0.89
ZNF541-201ENST00000263351 ALKQ9UM73 1620 aa20.61■□□□□ 0.89
ZNF541-201ENST00000263351 RAB3GAP1Q15042 981 aa20.61■□□□□ 0.89
ZNF541-201ENST00000263351 SNX21Q969T3 373 aa20.61■□□□□ 0.89
ZNF541-201ENST00000263351 KNDC1Q76NI1 1749 aa20.6■□□□□ 0.89
ZNF541-201ENST00000263351 MCM10Q7L590 875 aa20.6■□□□□ 0.89
ZNF541-201ENST00000263351 ABCC4O15439 1325 aa20.6■□□□□ 0.89
ZNF541-201ENST00000263351 KIF20BQ96Q89 1820 aa20.6■□□□□ 0.89
ZNF541-201ENST00000263351 DDX11L8A8MPP1 907 aa20.59■□□□□ 0.89
ZNF541-201ENST00000263351 K7ELQ4 463 aaPredicted RBP20.59■□□□□ 0.89
ZNF541-201ENST00000263351 PLEKHM2Q8IWE5 1019 aa20.59■□□□□ 0.89
ZNF541-201ENST00000263351 ZNF853P0CG23 659 aa20.59■□□□□ 0.89
ZNF541-201ENST00000263351 MRE11P49959 708 aa20.58■□□□□ 0.89
ZNF541-201ENST00000263351 PREX1Q8TCU6 1659 aa20.58■□□□□ 0.88
ZNF541-201ENST00000263351 TSHZ3Q63HK5 1081 aa20.58■□□□□ 0.88
ZNF541-201ENST00000263351 GCC1Q96CN9 775 aa20.58■□□□□ 0.88
ZNF541-201ENST00000263351 PTCH1Q13635 1447 aa20.57■□□□□ 0.88
ZNF541-201ENST00000263351 GNAI1P63096 354 aa20.57■□□□□ 0.88
ZNF541-201ENST00000263351 IFT57Q9NWB7 429 aa20.57■□□□□ 0.88
ZNF541-201ENST00000263351 DLG5Q8TDM6 1919 aa20.56■□□□□ 0.88
ZNF541-201ENST00000263351 FOXD4L5Q5VV16 416 aaPredicted RBP20.56■□□□□ 0.88
ZNF541-201ENST00000263351 FOXD4L4Q8WXT5 416 aaPredicted RBP20.56■□□□□ 0.88
ZNF541-201ENST00000263351 ZFYVE9O95405 1425 aa20.56■□□□□ 0.88
ZNF541-201ENST00000263351 CPS1P31327 1500 aa20.55■□□□□ 0.88
ZNF541-201ENST00000263351 PNNQ9H307 717 aaKnown RBP20.55■□□□□ 0.88
ZNF541-201ENST00000263351 CFAP44Q96MT7 982 aa20.54■□□□□ 0.88
ZNF541-201ENST00000263351 ARHGAP31Q2M1Z3 1444 aa20.54■□□□□ 0.88
ZNF541-201ENST00000263351 OSCARQ8IYS5 282 aa20.54■□□□□ 0.88
ZNF541-201ENST00000263351 ZGPATQ8N5A5 531 aaKnown RBP20.54■□□□□ 0.88
ZNF541-201ENST00000263351 MEIS3Q99687 375 aa20.54■□□□□ 0.88
ZNF541-201ENST00000263351 CLTCQ00610 1675 aaKnown RBP20.54■□□□□ 0.88
ZNF541-201ENST00000263351 CDC45O75419 566 aa20.53■□□□□ 0.88
ZNF541-201ENST00000263351 SULT6B1Q6IMI4 303 aa20.53■□□□□ 0.88
ZNF541-201ENST00000263351 RIMS2Q9UQ26 1411 aa20.53■□□□□ 0.88
ZNF541-201ENST00000263351 PIK3R4Q99570 1358 aa20.53■□□□□ 0.88
ZNF541-201ENST00000263351 FOXO3O43524 673 aa20.52■□□□□ 0.88
ZNF541-201ENST00000263351 BRPF1P55201 1214 aaPredicted RBP20.52■□□□□ 0.88
ZNF541-201ENST00000263351 METP08581 1390 aa20.52■□□□□ 0.88
ZNF541-201ENST00000263351 F6X3S4 739 aa20.52■□□□□ 0.88
ZNF541-201ENST00000263351 NCLP19338 710 aaKnown RBP20.51■□□□□ 0.87
ZNF541-201ENST00000263351 NUDT16Q96DE0 195 aaKnown RBP20.51■□□□□ 0.87
ZNF541-201ENST00000263351 GBP4Q96PP9 640 aa20.51■□□□□ 0.87
ZNF541-201ENST00000263351 CLCN1P35523 988 aa20.51■□□□□ 0.87
ZNF541-201ENST00000263351 MCTP1Q6DN14 999 aa20.51■□□□□ 0.87
ZNF541-201ENST00000263351 ARHGAP45Q92619 1136 aa20.51■□□□□ 0.87
ZNF541-201ENST00000263351 MSH6P52701 1360 aa20.51■□□□□ 0.87
ZNF541-201ENST00000263351 WASLO00401 505 aaPredicted RBP20.5■□□□□ 0.87
ZNF541-201ENST00000263351 CDC42BPGQ6DT37 1551 aa20.5■□□□□ 0.87
ZNF541-201ENST00000263351 BAG4O95429 457 aaKnown RBP20.5■□□□□ 0.87
ZNF541-201ENST00000263351 SDSP20132 328 aa20.5■□□□□ 0.87
ZNF541-201ENST00000263351 TTC22Q5TAA0 569 aa20.5■□□□□ 0.87
ZNF541-201ENST00000263351 RICTORQ6R327 1708 aa20.5■□□□□ 0.87
ZNF541-201ENST00000263351 ESPNB1AK53 854 aa20.49■□□□□ 0.87
ZNF541-201ENST00000263351 G2E3Q7L622 706 aa20.49■□□□□ 0.87
ZNF541-201ENST00000263351 COG3Q96JB2 828 aa20.49■□□□□ 0.87
ZNF541-201ENST00000263351 DCTPP1Q9H773 170 aa20.49■□□□□ 0.87
ZNF541-201ENST00000263351 DDX49Q9Y6V7 483 aaKnown RBP20.49■□□□□ 0.87
ZNF541-201ENST00000263351 HSP90AB2PQ58FF8 381 aa20.48■□□□□ 0.87
ZNF541-201ENST00000263351 SLC4A10Q6U841 1118 aa20.48■□□□□ 0.87
ZNF541-201ENST00000263351 PRR36Q9H6K5 1346 aa20.48■□□□□ 0.87
ZNF541-201ENST00000263351 EIF4A2Q14240 407 aaKnown RBP20.48■□□□□ 0.87
ZNF541-201ENST00000263351 NOL8Q76FK4 1167 aaKnown RBP20.48■□□□□ 0.87
ZNF541-201ENST00000263351 NECTIN2Q92692 538 aa20.48■□□□□ 0.87
ZNF541-201ENST00000263351 RBM27Q9P2N5 1060 aaKnown RBP20.48■□□□□ 0.87
ZNF541-201ENST00000263351 CEP85Q6P2H3 762 aa20.47■□□□□ 0.87
ZNF541-201ENST00000263351 USP26Q9BXU7 913 aa20.47■□□□□ 0.87
ZNF541-201ENST00000263351 ATP10DQ9P241 1426 aa20.47■□□□□ 0.87
ZNF541-201ENST00000263351 RGS12O14924 1447 aa20.47■□□□□ 0.87
ZNF541-201ENST00000263351 API5Q9BZZ5 524 aaKnown RBP20.46■□□□□ 0.87
ZNF541-201ENST00000263351 CAVIN1Q6NZI2 390 aaKnown RBP20.46■□□□□ 0.87
ZNF541-201ENST00000263351 CIZ1Q9ULV3 898 aaPredicted RBP20.46■□□□□ 0.87
ZNF541-201ENST00000263351 NEO1Q92859 1461 aa20.45■□□□□ 0.86
ZNF541-201ENST00000263351 CYB5RLQ6IPT4 315 aa20.45■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms