RNA–Protein interactions for RNA: ENST00000261517.9

VPS13C-202, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13C, Length 13,400 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-202ENST00000261517 CAVIN2O95810 425 aa5.17□□□□□ -1.58
VPS13C-202ENST00000261517 PDE4AP27815 886 aa5.17□□□□□ -1.58
VPS13C-202ENST00000261517 RIC3Q7Z5B4 369 aa5.17□□□□□ -1.58
VPS13C-202ENST00000261517 CCDC158Q5M9N0 1113 aa5.17□□□□□ -1.58
VPS13C-202ENST00000261517 PROSER2Q86WR7 435 aaPredicted RBP5.17□□□□□ -1.58
VPS13C-202ENST00000261517 ATP7AQ04656 1500 aa5.17□□□□□ -1.58
VPS13C-202ENST00000261517 ZNF608Q9ULD9 1512 aaPredicted RBP5.17□□□□□ -1.58
VPS13C-202ENST00000261517 CCDC178Q5BJE1 867 aa5.17□□□□□ -1.58
VPS13C-202ENST00000261517 TNRQ92752 1358 aa5.17□□□□□ -1.58
VPS13C-202ENST00000261517 HMGB1P09429 215 aaKnown RBP5.17□□□□□ -1.58
VPS13C-202ENST00000261517 PHAXQ9H814 394 aaKnown RBP5.17□□□□□ -1.58
VPS13C-202ENST00000261517 A0A087WZG4 1122 aa5.17□□□□□ -1.58
VPS13C-202ENST00000261517 ZMYM4Q5VZL5 1548 aa5.16□□□□□ -1.58
VPS13C-202ENST00000261517 STARD3NLO95772 234 aa5.16□□□□□ -1.58
VPS13C-202ENST00000261517 SMC3Q9UQE7 1217 aa5.16□□□□□ -1.58
VPS13C-202ENST00000261517 SYCP2Q9BX26 1530 aa5.16□□□□□ -1.58
VPS13C-202ENST00000261517 PRAM1Q96QH2 718 aa5.16□□□□□ -1.58
VPS13C-202ENST00000261517 MTHFSP49914 203 aa5.16□□□□□ -1.58
VPS13C-202ENST00000261517 AFAP1Q8N556 730 aa5.16□□□□□ -1.58
VPS13C-202ENST00000261517 NFE2L2Q16236 605 aa5.16□□□□□ -1.58
VPS13C-202ENST00000261517 PDZRN4Q6ZMN7 1036 aaPredicted RBP5.16□□□□□ -1.58
VPS13C-202ENST00000261517 SOX12O15370 315 aa5.16□□□□□ -1.58
VPS13C-202ENST00000261517 PLCB2Q00722 1185 aa5.16□□□□□ -1.58
VPS13C-202ENST00000261517 CCDC27Q2M243 656 aa5.16□□□□□ -1.58
VPS13C-202ENST00000261517 ERCC4Q92889 916 aaPredicted RBP5.16□□□□□ -1.58
VPS13C-202ENST00000261517 TRAPPC8Q9Y2L5 1435 aa5.16□□□□□ -1.58
VPS13C-202ENST00000261517 ZNF644Q9H582 1327 aaPredicted RBP5.16□□□□□ -1.58
VPS13C-202ENST00000261517 TRIM21P19474 475 aaKnown RBP5.16□□□□□ -1.58
VPS13C-202ENST00000261517 ARHGAP45Q92619 1136 aa5.16□□□□□ -1.58
VPS13C-202ENST00000261517 HYPKQ9NX55 129 aa5.16□□□□□ -1.58
VPS13C-202ENST00000261517 RTL1A6NKG5 1358 aa5.15□□□□□ -1.58
VPS13C-202ENST00000261517 CERS3Q8IU89 383 aa5.15□□□□□ -1.58
VPS13C-202ENST00000261517 PREX2Q70Z35 1606 aa5.15□□□□□ -1.58
VPS13C-202ENST00000261517 TEX35Q5T0J7 233 aa5.15□□□□□ -1.58
VPS13C-202ENST00000261517 PIK3C2GO75747 1445 aa5.15□□□□□ -1.58
VPS13C-202ENST00000261517 CCDC173Q0VFZ6 552 aa5.15□□□□□ -1.58
VPS13C-202ENST00000261517 OLFM4Q6UX06 510 aa5.15□□□□□ -1.58
VPS13C-202ENST00000261517 C14orf93Q9H972 538 aaKnown RBP5.15□□□□□ -1.58
VPS13C-202ENST00000261517 ARGLU1Q9NWB6 273 aaPredicted RBP5.15□□□□□ -1.58
VPS13C-202ENST00000261517 CADPS2Q86UW7 1296 aa5.15□□□□□ -1.58
VPS13C-202ENST00000261517 NSD3Q9BZ95 1437 aa5.15□□□□□ -1.58
VPS13C-202ENST00000261517 STIM1Q13586 685 aa5.15□□□□□ -1.58
VPS13C-202ENST00000261517 ANO2Q9NQ90 1003 aa5.15□□□□□ -1.58
VPS13C-202ENST00000261517 CEP131Q9UPN4 1083 aa5.15□□□□□ -1.59
VPS13C-202ENST00000261517 ZMYM3Q14202 1370 aa5.15□□□□□ -1.59
VPS13C-202ENST00000261517 TCP11L2Q8N4U5 519 aa5.15□□□□□ -1.59
VPS13C-202ENST00000261517 LRRCC1Q9C099 1032 aa5.15□□□□□ -1.59
VPS13C-202ENST00000261517 CCDC196A0A1B0GTZ2 297 aa5.15□□□□□ -1.59
VPS13C-202ENST00000261517 GNAT3A8MTJ3 354 aa5.15□□□□□ -1.59
VPS13C-202ENST00000261517 HMGN5P82970 282 aaKnown RBP5.15□□□□□ -1.59
VPS13C-202ENST00000261517 ATP10AO60312 1499 aa5.15□□□□□ -1.59
VPS13C-202ENST00000261517 ATF7IPQ6VMQ6 1270 aa5.15□□□□□ -1.59
VPS13C-202ENST00000261517 TRIM22Q8IYM9 498 aa5.15□□□□□ -1.59
VPS13C-202ENST00000261517 SETQ01105 290 aaPredicted RBP5.14□□□□□ -1.59
VPS13C-202ENST00000261517 SASS6Q6UVJ0 657 aa5.14□□□□□ -1.59
VPS13C-202ENST00000261517 CDCA7Q9BWT1 371 aaPredicted RBP5.14□□□□□ -1.59
VPS13C-202ENST00000261517 NLRP2Q9NX02 1062 aa5.14□□□□□ -1.59
VPS13C-202ENST00000261517 KIF2AO00139 706 aaPredicted RBP5.14□□□□□ -1.59
VPS13C-202ENST00000261517 SMARCE1Q969G3 411 aa5.14□□□□□ -1.59
VPS13C-202ENST00000261517 RILPL2Q969X0 211 aa5.14□□□□□ -1.59
VPS13C-202ENST00000261517 LARP1Q6PKG0 1096 aaKnown RBP5.14□□□□□ -1.59
VPS13C-202ENST00000261517 C22orf23Q9BZE7 217 aa5.14□□□□□ -1.59
VPS13C-202ENST00000261517 CCDC39Q9UFE4 941 aa5.14□□□□□ -1.59
VPS13C-202ENST00000261517 SH2B1Q9NRF2 756 aaPredicted RBP5.14□□□□□ -1.59
VPS13C-202ENST00000261517 CFAP45Q9UL16 551 aa5.14□□□□□ -1.59
VPS13C-202ENST00000261517 WWC2Q6AWC2 1192 aa5.14□□□□□ -1.59
VPS13C-202ENST00000261517 CCDC43Q96MW1 224 aaKnown RBP5.14□□□□□ -1.59
VPS13C-202ENST00000261517 WDR33Q9C0J8 1336 aaKnown RBP5.14□□□□□ -1.59
VPS13C-202ENST00000261517 TWISTNBQ3B726 338 aaPredicted RBP5.14□□□□□ -1.59
VPS13C-202ENST00000261517 FAM13BQ9NYF5 915 aa5.14□□□□□ -1.59
VPS13C-202ENST00000261517 MVPQ14764 893 aaKnown RBP5.14□□□□□ -1.59
VPS13C-202ENST00000261517 IQCEQ6IPM2 695 aa5.14□□□□□ -1.59
VPS13C-202ENST00000261517 DDX49Q9Y6V7 483 aaKnown RBP5.14□□□□□ -1.59
VPS13C-202ENST00000261517 DESP17661 470 aa5.14□□□□□ -1.59
VPS13C-202ENST00000261517 PRAG1Q86YV5 1406 aa5.14□□□□□ -1.59
VPS13C-202ENST00000261517 CLASP1Q7Z460 1538 aa5.14□□□□□ -1.59
VPS13C-202ENST00000261517 CBFA2T2O43439 604 aa5.14□□□□□ -1.59
VPS13C-202ENST00000261517 CRBNQ96SW2 442 aa5.14□□□□□ -1.59
VPS13C-202ENST00000261517 MRE11P49959 708 aa5.14□□□□□ -1.59
VPS13C-202ENST00000261517 CABP4P57796 275 aa5.14□□□□□ -1.59
VPS13C-202ENST00000261517 FILIP1LQ4L180 1135 aa5.14□□□□□ -1.59
VPS13C-202ENST00000261517 SIRT1Q96EB6 747 aa5.14□□□□□ -1.59
VPS13C-202ENST00000261517 LAMC1P11047 1609 aa5.13□□□□□ -1.59
VPS13C-202ENST00000261517 TOMM22Q9NS69 142 aa5.13□□□□□ -1.59
VPS13C-202ENST00000261517 NOL7Q9UMY1 257 aaKnown RBP5.13□□□□□ -1.59
VPS13C-202ENST00000261517 CEP170Q5SW79 1584 aa5.13□□□□□ -1.59
VPS13C-202ENST00000261517 SF3B2Q13435 895 aaKnown RBP5.13□□□□□ -1.59
VPS13C-202ENST00000261517 TTF1Q15361 905 aaPredicted RBP5.13□□□□□ -1.59
VPS13C-202ENST00000261517 NFXL1Q6ZNB6 911 aa5.13□□□□□ -1.59
VPS13C-202ENST00000261517 ZNF330Q9Y3S2 320 aaPredicted RBP5.13□□□□□ -1.59
VPS13C-202ENST00000261517 SBNO2Q9Y2G9 1366 aa5.13□□□□□ -1.59
VPS13C-202ENST00000261517 TET3O43151 1660 aa5.13□□□□□ -1.59
VPS13C-202ENST00000261517 MSH6P52701 1360 aa5.13□□□□□ -1.59
VPS13C-202ENST00000261517 HDGFL1Q5TGJ6 251 aa5.13□□□□□ -1.59
VPS13C-202ENST00000261517 LTV1Q96GA3 475 aaPredicted RBP5.13□□□□□ -1.59
VPS13C-202ENST00000261517 ABCC1P33527 1531 aa5.13□□□□□ -1.59
VPS13C-202ENST00000261517 CFAP70Q5T0N1 1121 aa5.13□□□□□ -1.59
VPS13C-202ENST00000261517 AK7Q96M32 723 aa5.13□□□□□ -1.59
VPS13C-202ENST00000261517 CLSTN1O94985 981 aa5.13□□□□□ -1.59
VPS13C-202ENST00000261517 CCDC57Q2TAC2 916 aa5.13□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms