RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 RIMBP3BA6NNM3 1639 aa23.5■■□□□ 1.35
CPSF3-201ENST00000238112 RIMBP3Q9UFD9 1639 aa23.5■■□□□ 1.35
CPSF3-201ENST00000238112 CYB5RLQ6IPT4 315 aa23.49■■□□□ 1.35
CPSF3-201ENST00000238112 TSPYL6Q8N831 410 aa23.49■■□□□ 1.35
CPSF3-201ENST00000238112 REREQ9P2R6 1566 aa23.49■■□□□ 1.35
CPSF3-201ENST00000238112 MBIPQ9NS73 344 aa23.49■■□□□ 1.35
CPSF3-201ENST00000238112 SETD1AO15047 1707 aaKnown RBP23.48■■□□□ 1.35
CPSF3-201ENST00000238112 AATKQ6ZMQ8 1374 aa23.48■■□□□ 1.35
CPSF3-201ENST00000238112 PIK3R4Q99570 1358 aa23.48■■□□□ 1.35
CPSF3-201ENST00000238112 COG3Q96JB2 828 aa23.48■■□□□ 1.35
CPSF3-201ENST00000238112 ANKRD45Q5TZF3 282 aa23.48■■□□□ 1.35
CPSF3-201ENST00000238112 ELL2O00472 640 aaPredicted RBP23.47■■□□□ 1.35
CPSF3-201ENST00000238112 ZNF853P0CG23 659 aa23.47■■□□□ 1.35
CPSF3-201ENST00000238112 BMP2KLQ5H9B9 411 aa23.47■■□□□ 1.35
CPSF3-201ENST00000238112 RBM25P49756 843 aaKnown RBP23.47■■□□□ 1.35
CPSF3-201ENST00000238112 MCM4P33991 863 aa23.46■■□□□ 1.35
CPSF3-201ENST00000238112 TWISTNBQ3B726 338 aaPredicted RBP23.46■■□□□ 1.35
CPSF3-201ENST00000238112 L1TD1Q5T7N2 865 aaKnown RBP23.46■■□□□ 1.35
CPSF3-201ENST00000238112 C1orf115Q9H7X2 142 aa23.46■■□□□ 1.35
CPSF3-201ENST00000238112 ZRANB1Q9UGI0 708 aa23.46■■□□□ 1.35
CPSF3-201ENST00000238112 ABCF1Q8NE71 845 aaKnown RBP eCLIP23.45■■□□□ 1.35
CPSF3-201ENST00000238112 MLECQ14165 292 aa23.45■■□□□ 1.34
CPSF3-201ENST00000238112 NUDT16Q96DE0 195 aaKnown RBP23.45■■□□□ 1.34
CPSF3-201ENST00000238112 CFAP44Q96MT7 982 aa23.45■■□□□ 1.34
CPSF3-201ENST00000238112 ABCC4O15439 1325 aa23.45■■□□□ 1.34
CPSF3-201ENST00000238112 TXNDC2Q86VQ3 553 aa23.44■■□□□ 1.34
CPSF3-201ENST00000238112 CCDC61Q9Y6R9 512 aa23.43■■□□□ 1.34
CPSF3-201ENST00000238112 METP08581 1390 aa23.43■■□□□ 1.34
CPSF3-201ENST00000238112 RRS1Q15050 365 aaKnown RBP23.43■■□□□ 1.34
CPSF3-201ENST00000238112 API5Q9BZZ5 524 aaKnown RBP23.42■■□□□ 1.34
CPSF3-201ENST00000238112 C8orf58Q8NAV2 365 aa23.41■■□□□ 1.34
CPSF3-201ENST00000238112 SNX21Q969T3 373 aa23.41■■□□□ 1.34
CPSF3-201ENST00000238112 DIP2BQ9P265 1576 aa23.4■■□□□ 1.34
CPSF3-201ENST00000238112 NRXN3Q9Y4C0 1643 aa23.4■■□□□ 1.34
CPSF3-201ENST00000238112 NCKAP5LQ9HCH0 1330 aa23.39■■□□□ 1.34
CPSF3-201ENST00000238112 CPS1P31327 1500 aa23.39■■□□□ 1.33
CPSF3-201ENST00000238112 FAM83GA6ND36 823 aa23.38■■□□□ 1.33
CPSF3-201ENST00000238112 SIRT2Q8IXJ6 389 aa23.38■■□□□ 1.33
CPSF3-201ENST00000238112 TSPOAP1O95153 1857 aa23.37■■□□□ 1.33
CPSF3-201ENST00000238112 ZNF692Q9BU19 519 aaPredicted RBP23.37■■□□□ 1.33
CPSF3-201ENST00000238112 HDGFP51858 240 aaKnown RBP23.37■■□□□ 1.33
CPSF3-201ENST00000238112 SIRT1Q96EB6 747 aa23.37■■□□□ 1.33
CPSF3-201ENST00000238112 NCOA3Q9Y6Q9 1424 aa23.37■■□□□ 1.33
CPSF3-201ENST00000238112 ESF1Q9H501 851 aaKnown RBP23.36■■□□□ 1.33
CPSF3-201ENST00000238112 MON2Q7Z3U7 1717 aa23.36■■□□□ 1.33
CPSF3-201ENST00000238112 HSP90AB1P08238 724 aaKnown RBP23.36■■□□□ 1.33
CPSF3-201ENST00000238112 DCTN1Q14203 1278 aa23.36■■□□□ 1.33
CPSF3-201ENST00000238112 FAM43AQ8N2R8 423 aa23.35■■□□□ 1.33
CPSF3-201ENST00000238112 GOLGA6L3A6NEY3 463 aa23.34■■□□□ 1.33
CPSF3-201ENST00000238112 DDX11L8A8MPP1 907 aa23.34■■□□□ 1.33
CPSF3-201ENST00000238112 TBC1D9Q6ZT07 1266 aa23.34■■□□□ 1.33
CPSF3-201ENST00000238112 TECPR2O15040 1411 aa23.34■■□□□ 1.33
CPSF3-201ENST00000238112 KIF24Q5T7B8 1368 aa23.34■■□□□ 1.33
CPSF3-201ENST00000238112 DLG5Q8TDM6 1919 aa23.34■■□□□ 1.33
CPSF3-201ENST00000238112 TRAK2O60296 914 aa23.34■■□□□ 1.33
CPSF3-201ENST00000238112 GZF1Q9H116 711 aaPredicted RBP23.33■■□□□ 1.33
CPSF3-201ENST00000238112 KNDC1Q76NI1 1749 aa23.33■■□□□ 1.32
CPSF3-201ENST00000238112 DDIT3P35638 169 aa23.32■■□□□ 1.32
CPSF3-201ENST00000238112 HAP1P54257 671 aaPredicted RBP23.32■■□□□ 1.32
CPSF3-201ENST00000238112 C3P01024 1663 aa23.32■■□□□ 1.32
CPSF3-201ENST00000238112 ITSN1Q15811 1721 aa23.31■■□□□ 1.32
CPSF3-201ENST00000238112 ARXQ96QS3 562 aa23.31■■□□□ 1.32
CPSF3-201ENST00000238112 ANO8Q9HCE9 1232 aaPredicted RBP23.31■■□□□ 1.32
CPSF3-201ENST00000238112 CIZ1Q9ULV3 898 aaPredicted RBP23.31■■□□□ 1.32
CPSF3-201ENST00000238112 CDC45O75419 566 aa23.3■■□□□ 1.32
CPSF3-201ENST00000238112 SULT6B1Q6IMI4 303 aa23.3■■□□□ 1.32
CPSF3-201ENST00000238112 KIF2CQ99661 725 aa23.3■■□□□ 1.32
CPSF3-201ENST00000238112 AKAP12Q02952 1782 aa23.3■■□□□ 1.32
CPSF3-201ENST00000238112 PRR36Q9H6K5 1346 aa23.3■■□□□ 1.32
CPSF3-201ENST00000238112 HSP90AA1P07900 732 aaKnown RBP23.3■■□□□ 1.32
CPSF3-201ENST00000238112 EIF4A2Q14240 407 aaKnown RBP23.3■■□□□ 1.32
CPSF3-201ENST00000238112 AEBP1Q8IUX7 1158 aa23.29■■□□□ 1.32
CPSF3-201ENST00000238112 FSD2A1L4K1 749 aa23.28■■□□□ 1.32
CPSF3-201ENST00000238112 EIF5BO60841 1220 aaKnown RBP23.28■■□□□ 1.32
CPSF3-201ENST00000238112 INTS3Q68E01 1043 aaKnown RBP23.28■■□□□ 1.32
CPSF3-201ENST00000238112 NRKQ7Z2Y5 1582 aa23.28■■□□□ 1.32
CPSF3-201ENST00000238112 DCTPP1Q9H773 170 aa23.27■■□□□ 1.32
CPSF3-201ENST00000238112 TTC21BQ7Z4L5 1316 aa23.26■■□□□ 1.31
CPSF3-201ENST00000238112 GBP4Q96PP9 640 aa23.26■■□□□ 1.31
CPSF3-201ENST00000238112 K7ELQ4 463 aaPredicted RBP23.25■■□□□ 1.31
CPSF3-201ENST00000238112 XRCC6P12956 609 aaKnown RBP eCLIP23.25■■□□□ 1.31
CPSF3-201ENST00000238112 PLEKHM2Q8IWE5 1019 aa23.25■■□□□ 1.31
CPSF3-201ENST00000238112 TNPO1Q92973 898 aaKnown RBP23.25■■□□□ 1.31
CPSF3-201ENST00000238112 CHL1O00533 1208 aa23.25■■□□□ 1.31
CPSF3-201ENST00000238112 GSPT1P15170 499 aaKnown RBP23.24■■□□□ 1.31
CPSF3-201ENST00000238112 ROBO2Q9HCK4 1378 aa23.24■■□□□ 1.31
CPSF3-201ENST00000238112 RAB3GAP1Q15042 981 aa23.24■■□□□ 1.31
CPSF3-201ENST00000238112 MCM10Q7L590 875 aa23.24■■□□□ 1.31
CPSF3-201ENST00000238112 ANKRD44Q8N8A2 993 aa23.24■■□□□ 1.31
CPSF3-201ENST00000238112 TNRQ92752 1358 aa23.23■■□□□ 1.31
CPSF3-201ENST00000238112 CD2BP2O95400 341 aaKnown RBP23.23■■□□□ 1.31
CPSF3-201ENST00000238112 KRT24Q2M2I5 525 aa23.23■■□□□ 1.31
CPSF3-201ENST00000238112 ACEP12821 1306 aa23.22■■□□□ 1.31
CPSF3-201ENST00000238112 KIAA0232Q92628 1395 aa23.22■■□□□ 1.31
CPSF3-201ENST00000238112 RPAP2Q8IXW5 612 aaPredicted RBP23.22■■□□□ 1.31
CPSF3-201ENST00000238112 TMEM2Q9UHN6 1383 aa23.22■■□□□ 1.31
CPSF3-201ENST00000238112 PTPRCP08575 1304 aa23.21■■□□□ 1.31
CPSF3-201ENST00000238112 TTC22Q5TAA0 569 aa23.21■■□□□ 1.31
CPSF3-201ENST00000238112 OVOS2A0A0J9YW53 1432 aa23.21■■□□□ 1.31
CPSF3-201ENST00000238112 OVOS2Q6IE36 1432 aa23.21■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 9.8 ms