RNA–Protein interactions for RNA: ENST00000233146.6

MSH2-201, Transcript of mutS homolog 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH2, Length 3,307 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2-201ENST00000233146 NFATC2IPQ8NCF5 419 aa15.72■□□□□ 0.11
MSH2-201ENST00000233146 SMC4Q9NTJ3 1288 aa15.72■□□□□ 0.11
MSH2-201ENST00000233146 LMOD3Q0VAK6 560 aa15.71■□□□□ 0.11
MSH2-201ENST00000233146 ZKSCAN2Q63HK3 967 aa15.71■□□□□ 0.11
MSH2-201ENST00000233146 ZNF446Q9NWS9 450 aa15.71■□□□□ 0.11
MSH2-201ENST00000233146 YEATS2Q9ULM3 1422 aa15.71■□□□□ 0.11
MSH2-201ENST00000233146 RAD50Q92878 1312 aa15.71■□□□□ 0.11
MSH2-201ENST00000233146 LNPKQ9C0E8 428 aa15.71■□□□□ 0.1
MSH2-201ENST00000233146 BRMS1Q9HCU9 246 aa15.71■□□□□ 0.1
MSH2-201ENST00000233146 PAXBP1Q9Y5B6 917 aa15.71■□□□□ 0.1
MSH2-201ENST00000233146 EIF4G3O43432 1585 aaKnown RBP15.7■□□□□ 0.1
MSH2-201ENST00000233146 GUCY2CP25092 1073 aa15.7■□□□□ 0.1
MSH2-201ENST00000233146 CHD1LQ86WJ1 897 aa15.7■□□□□ 0.1
MSH2-201ENST00000233146 TMX1Q9H3N1 280 aa15.7■□□□□ 0.1
MSH2-201ENST00000233146 ABCC10Q5T3U5 1492 aa15.69■□□□□ 0.1
MSH2-201ENST00000233146 CASQ1P31415 396 aa15.69■□□□□ 0.1
MSH2-201ENST00000233146 CARD10Q9BWT7 1032 aa15.69■□□□□ 0.1
MSH2-201ENST00000233146 ASXL1Q8IXJ9 1541 aa15.69■□□□□ 0.1
MSH2-201ENST00000233146 ZNF644Q9H582 1327 aaPredicted RBP15.69■□□□□ 0.1
MSH2-201ENST00000233146 CUL7Q14999 1698 aa15.69■□□□□ 0.1
MSH2-201ENST00000233146 ITSN2Q9NZM3 1697 aa15.69■□□□□ 0.1
MSH2-201ENST00000233146 CCDC112Q8NEF3 446 aa15.69■□□□□ 0.1
MSH2-201ENST00000233146 POLKQ9UBT6 870 aa15.69■□□□□ 0.1
MSH2-201ENST00000233146 ADGBQ8N7X0 1667 aa15.69■□□□□ 0.1
MSH2-201ENST00000233146 SLC26A8Q96RN1 970 aa15.68■□□□□ 0.1
MSH2-201ENST00000233146 HAP1P54257 671 aaPredicted RBP15.68■□□□□ 0.1
MSH2-201ENST00000233146 CT47A1Q5JQC4 288 aaPredicted RBP15.68■□□□□ 0.1
MSH2-201ENST00000233146 SLFNL1Q499Z3 407 aa15.68■□□□□ 0.1
MSH2-201ENST00000233146 DDX19BQ9UMR2 479 aa15.68■□□□□ 0.1
MSH2-201ENST00000233146 BANK1Q8NDB2 785 aa15.67■□□□□ 0.1
MSH2-201ENST00000233146 SCAF11Q99590 1463 aaKnown RBP15.67■□□□□ 0.1
MSH2-201ENST00000233146 SYT10Q6XYQ8 523 aa15.67■□□□□ 0.1
MSH2-201ENST00000233146 KANK1Q14678 1352 aa15.67■□□□□ 0.1
MSH2-201ENST00000233146 PLB1Q6P1J6 1458 aa15.67■□□□□ 0.1
MSH2-201ENST00000233146 GYS2P54840 703 aa15.66■□□□□ 0.1
MSH2-201ENST00000233146 FBXO38Q6PIJ6 1188 aa15.66■□□□□ 0.1
MSH2-201ENST00000233146 PHF23Q9BUL5 403 aaPredicted RBP15.66■□□□□ 0.1
MSH2-201ENST00000233146 MYO1CO00159 1063 aa15.66■□□□□ 0.1
MSH2-201ENST00000233146 AP5Z1O43299 807 aa15.66■□□□□ 0.1
MSH2-201ENST00000233146 HCLS1P14317 486 aaPredicted RBP15.66■□□□□ 0.1
MSH2-201ENST00000233146 EP400NLQ6ZTU2 488 aa15.66■□□□□ 0.1
MSH2-201ENST00000233146 SYNMO15061 1565 aa15.66■□□□□ 0.1
MSH2-201ENST00000233146 TNNT1P13805 278 aa15.66■□□□□ 0.1
MSH2-201ENST00000233146 CEP83Q9Y592 693 aa15.66■□□□□ 0.1
MSH2-201ENST00000233146 WDR63Q8IWG1 891 aa15.65■□□□□ 0.1
MSH2-201ENST00000233146 ATG3Q9NT62 314 aa15.65■□□□□ 0.1
MSH2-201ENST00000233146 GOLGA6L6A8MZA4 724 aa15.65■□□□□ 0.1
MSH2-201ENST00000233146 C16orf45Q96MC5 204 aaPredicted RBP15.65■□□□□ 0.1
MSH2-201ENST00000233146 ADGRL2O95490 1459 aa15.65■□□□□ 0.1
MSH2-201ENST00000233146 TRIM66O15016 1216 aa15.65■□□□□ 0.1
MSH2-201ENST00000233146 BRD1O95696 1058 aa15.65■□□□□ 0.1
MSH2-201ENST00000233146 FBLN2P98095 1184 aa15.65■□□□□ 0.1
MSH2-201ENST00000233146 TXLNBQ8N3L3 684 aa15.65■□□□□ 0.1
MSH2-201ENST00000233146 ANKRD50Q9ULJ7 1429 aa15.64■□□□□ 0.09
MSH2-201ENST00000233146 C10orf67Q8IYJ2 551 aa15.64■□□□□ 0.09
MSH2-201ENST00000233146 ZBTB40Q9NUA8 1239 aa15.64■□□□□ 0.09
MSH2-201ENST00000233146 BMS1Q14692 1282 aaKnown RBP15.64■□□□□ 0.09
MSH2-201ENST00000233146 CDC45O75419 566 aa15.63■□□□□ 0.09
MSH2-201ENST00000233146 CCDC172P0C7W6 258 aa15.63■□□□□ 0.09
MSH2-201ENST00000233146 CCDC141Q6ZP82 1450 aa15.63■□□□□ 0.09
MSH2-201ENST00000233146 GADD45BO75293 160 aaPredicted RBP15.63■□□□□ 0.09
MSH2-201ENST00000233146 CCDC183Q5T5S1 534 aa15.63■□□□□ 0.09
MSH2-201ENST00000233146 FOXD4L5Q5VV16 416 aaPredicted RBP15.63■□□□□ 0.09
MSH2-201ENST00000233146 FOXD4L4Q8WXT5 416 aaPredicted RBP15.63■□□□□ 0.09
MSH2-201ENST00000233146 LCMT1Q9UIC8 334 aa15.63■□□□□ 0.09
MSH2-201ENST00000233146 TRIM27P14373 513 aa15.62■□□□□ 0.09
MSH2-201ENST00000233146 ITPRIPQ8IWB1 547 aa15.62■□□□□ 0.09
MSH2-201ENST00000233146 SPC24Q8NBT2 197 aa15.62■□□□□ 0.09
MSH2-201ENST00000233146 CFAP65Q6ZU64 1925 aaKnown RBP15.61■□□□□ 0.09
MSH2-201ENST00000233146 ST18O60284 1047 aa15.61■□□□□ 0.09
MSH2-201ENST00000233146 NEK11Q8NG66 645 aa15.61■□□□□ 0.09
MSH2-201ENST00000233146 USP26Q9BXU7 913 aa15.61■□□□□ 0.09
MSH2-201ENST00000233146 KRBA2Q6ZNG9 492 aa15.61■□□□□ 0.09
MSH2-201ENST00000233146 ZNF215Q9UL58 517 aaPredicted RBP15.61■□□□□ 0.09
MSH2-201ENST00000233146 REREQ9P2R6 1566 aa15.61■□□□□ 0.09
MSH2-201ENST00000233146 CDK13Q14004 1512 aaKnown RBP15.61■□□□□ 0.09
MSH2-201ENST00000233146 NUP155O75694 1391 aa15.61■□□□□ 0.09
MSH2-201ENST00000233146 PTGS1P23219 599 aa15.6■□□□□ 0.09
MSH2-201ENST00000233146 FHOD1Q9Y613 1164 aa15.6■□□□□ 0.09
MSH2-201ENST00000233146 PTPRCP08575 1304 aa15.6■□□□□ 0.09
MSH2-201ENST00000233146 TSGA10IPQ3SY00 556 aa15.6■□□□□ 0.09
MSH2-201ENST00000233146 JRKLQ9Y4A0 524 aa15.6■□□□□ 0.09
MSH2-201ENST00000233146 PLCB2Q00722 1185 aa15.6■□□□□ 0.09
MSH2-201ENST00000233146 FUCA2Q9BTY2 467 aa15.6■□□□□ 0.09
MSH2-201ENST00000233146 PATL2C9JE40 543 aaKnown RBP15.59■□□□□ 0.09
MSH2-201ENST00000233146 MX1P20591 662 aa15.59■□□□□ 0.09
MSH2-201ENST00000233146 SRPK2P78362 688 aaKnown RBP15.59■□□□□ 0.09
MSH2-201ENST00000233146 TEX35Q5T0J7 233 aa15.59■□□□□ 0.09
MSH2-201ENST00000233146 ERO1AQ96HE7 468 aa15.59■□□□□ 0.09
MSH2-201ENST00000233146 IQSEC2Q5JU85 1478 aa15.59■□□□□ 0.09
MSH2-201ENST00000233146 GTF3C6Q969F1 213 aa15.59■□□□□ 0.09
MSH2-201ENST00000233146 ARID3CA6NKF2 412 aa15.58■□□□□ 0.09
MSH2-201ENST00000233146 SMARCA5O60264 1052 aaPredicted RBP15.58■□□□□ 0.09
MSH2-201ENST00000233146 ELF2Q15723 593 aa15.58■□□□□ 0.09
MSH2-201ENST00000233146 NEUROD2Q15784 382 aa15.58■□□□□ 0.09
MSH2-201ENST00000233146 USP48Q86UV5 1035 aa15.58■□□□□ 0.09
MSH2-201ENST00000233146 RTF1Q92541 710 aaKnown RBP15.58■□□□□ 0.09
MSH2-201ENST00000233146 IFT57Q9NWB7 429 aa15.58■□□□□ 0.09
MSH2-201ENST00000233146 ZSCAN21Q9Y5A6 473 aaPredicted RBP15.58■□□□□ 0.09
MSH2-201ENST00000233146 CLTCL1P53675 1640 aa15.58■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms