RNA–Protein interactions for RNA: ENST00000003912.7

NIPAL3-201, Transcript of NIPA like domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene NIPAL3, Length 5,481 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPAL3-201ENST00000003912 SLC3A2P08195 630 aaKnown RBP12.55□□□□□ -0.4
NIPAL3-201ENST00000003912 WDR97A6NE52 1622 aa12.55□□□□□ -0.4
NIPAL3-201ENST00000003912 CDC45O75419 566 aa12.55□□□□□ -0.4
NIPAL3-201ENST00000003912 DNAJC2Q99543 621 aaKnown RBP12.55□□□□□ -0.4
NIPAL3-201ENST00000003912 FOXD4L5Q5VV16 416 aaPredicted RBP12.55□□□□□ -0.4
NIPAL3-201ENST00000003912 FOXD4L4Q8WXT5 416 aaPredicted RBP12.55□□□□□ -0.4
NIPAL3-201ENST00000003912 GCC1Q96CN9 775 aa12.55□□□□□ -0.4
NIPAL3-201ENST00000003912 ANO8Q9HCE9 1232 aaPredicted RBP12.55□□□□□ -0.4
NIPAL3-201ENST00000003912 ACEP12821 1306 aa12.54□□□□□ -0.4
NIPAL3-201ENST00000003912 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.54□□□□□ -0.4
NIPAL3-201ENST00000003912 GZF1Q9H116 711 aaPredicted RBP12.54□□□□□ -0.4
NIPAL3-201ENST00000003912 ZPR1O75312 459 aa12.54□□□□□ -0.4
NIPAL3-201ENST00000003912 SART3Q15020 963 aaKnown RBP12.53□□□□□ -0.4
NIPAL3-201ENST00000003912 TAF7Q15545 349 aaPredicted RBP12.53□□□□□ -0.4
NIPAL3-201ENST00000003912 PTCD1O75127 700 aaKnown RBP12.53□□□□□ -0.4
NIPAL3-201ENST00000003912 CREBRFQ8IUR6 639 aa12.53□□□□□ -0.4
NIPAL3-201ENST00000003912 EMILIN1Q9Y6C2 1016 aa12.53□□□□□ -0.4
NIPAL3-201ENST00000003912 NCBP3Q53F19 620 aaKnown RBP12.53□□□□□ -0.4
NIPAL3-201ENST00000003912 USHBP1Q8N6Y0 703 aa12.53□□□□□ -0.4
NIPAL3-201ENST00000003912 PSMA5P28066 241 aa12.53□□□□□ -0.4
NIPAL3-201ENST00000003912 SAFBQ15424 915 aaKnown RBP eCLIP12.53□□□□□ -0.4
NIPAL3-201ENST00000003912 ATF7IPQ6VMQ6 1270 aa12.52□□□□□ -0.4
NIPAL3-201ENST00000003912 BICDL1Q6ZP65 573 aa12.52□□□□□ -0.4
NIPAL3-201ENST00000003912 ZMYM3Q14202 1370 aa12.52□□□□□ -0.41
NIPAL3-201ENST00000003912 TTC21AQ8NDW8 1320 aa12.52□□□□□ -0.41
NIPAL3-201ENST00000003912 SAMD1Q6SPF0 538 aaPredicted RBP12.52□□□□□ -0.41
NIPAL3-201ENST00000003912 CCDC47Q96A33 483 aaKnown RBP12.52□□□□□ -0.41
NIPAL3-201ENST00000003912 DDX11L8A8MPP1 907 aa12.51□□□□□ -0.41
NIPAL3-201ENST00000003912 MPRIPQ6WCQ1 1025 aa12.51□□□□□ -0.41
NIPAL3-201ENST00000003912 ABCC11Q96J66 1382 aa12.51□□□□□ -0.41
NIPAL3-201ENST00000003912 IGHMBP2P38935 993 aaKnown RBP12.51□□□□□ -0.41
NIPAL3-201ENST00000003912 TPD52L1Q16890 204 aaPredicted RBP12.51□□□□□ -0.41
NIPAL3-201ENST00000003912 IFT57Q9NWB7 429 aa12.51□□□□□ -0.41
NIPAL3-201ENST00000003912 MCM10Q7L590 875 aa12.51□□□□□ -0.41
NIPAL3-201ENST00000003912 PBRM1Q86U86 1689 aa12.5□□□□□ -0.41
NIPAL3-201ENST00000003912 DUSP27Q5VZP5 1158 aa12.5□□□□□ -0.41
NIPAL3-201ENST00000003912 IFNL2Q8IZJ0 200 aa12.5□□□□□ -0.41
NIPAL3-201ENST00000003912 CEP126Q9P2H0 1117 aa12.5□□□□□ -0.41
NIPAL3-201ENST00000003912 LRRCC1Q9C099 1032 aa12.5□□□□□ -0.41
NIPAL3-201ENST00000003912 SIL1Q9H173 461 aa12.5□□□□□ -0.41
NIPAL3-201ENST00000003912 C19orf44Q9H6X5 657 aa12.5□□□□□ -0.41
NIPAL3-201ENST00000003912 C1orf115Q9H7X2 142 aa12.5□□□□□ -0.41
NIPAL3-201ENST00000003912 XBP1P17861 261 aa12.5□□□□□ -0.41
NIPAL3-201ENST00000003912 IKQ13123 557 aaPredicted RBP12.5□□□□□ -0.41
NIPAL3-201ENST00000003912 HSP90AB3PQ58FF7 597 aa12.49□□□□□ -0.41
NIPAL3-201ENST00000003912 ZSCAN25Q6NSZ9 544 aa12.49□□□□□ -0.41
NIPAL3-201ENST00000003912 CCDC43Q96MW1 224 aaKnown RBP12.49□□□□□ -0.41
NIPAL3-201ENST00000003912 BRMS1Q9HCU9 246 aa12.49□□□□□ -0.41
NIPAL3-201ENST00000003912 SMC3Q9UQE7 1217 aa12.49□□□□□ -0.41
NIPAL3-201ENST00000003912 LARP1Q6PKG0 1096 aaKnown RBP12.49□□□□□ -0.41
NIPAL3-201ENST00000003912 ANKRD24Q8TF21 1146 aa12.49□□□□□ -0.41
NIPAL3-201ENST00000003912 TEX13AQ9BXU3 409 aaPredicted RBP12.49□□□□□ -0.41
NIPAL3-201ENST00000003912 BCAR3O75815 825 aa12.49□□□□□ -0.41
NIPAL3-201ENST00000003912 HSPA2P54652 639 aa12.49□□□□□ -0.41
NIPAL3-201ENST00000003912 NACAP1Q9BZK3 213 aa12.49□□□□□ -0.41
NIPAL3-201ENST00000003912 ATP10AO60312 1499 aa12.49□□□□□ -0.41
NIPAL3-201ENST00000003912 CEP170Q5SW79 1584 aa12.49□□□□□ -0.41
NIPAL3-201ENST00000003912 TPM2P07951 284 aa12.48□□□□□ -0.41
NIPAL3-201ENST00000003912 SHANK2Q9UPX8 1470 aa12.48□□□□□ -0.41
NIPAL3-201ENST00000003912 FMNL2Q96PY5 1086 aa12.48□□□□□ -0.41
NIPAL3-201ENST00000003912 ANKRD36BQ8N2N9 1353 aa12.48□□□□□ -0.41
NIPAL3-201ENST00000003912 SRGAP3O43295 1099 aa12.48□□□□□ -0.41
NIPAL3-201ENST00000003912 MIS18AQ9NYP9 233 aa12.48□□□□□ -0.41
NIPAL3-201ENST00000003912 NCKAP5LQ9HCH0 1330 aa12.48□□□□□ -0.41
NIPAL3-201ENST00000003912 HOOK1Q9UJC3 728 aaKnown RBP12.47□□□□□ -0.41
NIPAL3-201ENST00000003912 DISP1Q96F81 1524 aa12.47□□□□□ -0.41
NIPAL3-201ENST00000003912 MVPQ14764 893 aaKnown RBP12.47□□□□□ -0.41
NIPAL3-201ENST00000003912 TCOF1Q13428 1488 aaKnown RBP12.47□□□□□ -0.41
NIPAL3-201ENST00000003912 UHRF1BP1Q6BDS2 1440 aa12.47□□□□□ -0.41
NIPAL3-201ENST00000003912 PES1O00541 588 aaKnown RBP12.47□□□□□ -0.41
NIPAL3-201ENST00000003912 CHRNA2Q15822 529 aa12.47□□□□□ -0.41
NIPAL3-201ENST00000003912 GOLGA6L3A6NEY3 463 aa12.46□□□□□ -0.41
NIPAL3-201ENST00000003912 RBM5P52756 815 aaKnown RBP eCLIP12.46□□□□□ -0.41
NIPAL3-201ENST00000003912 C22orf23Q9BZE7 217 aa12.46□□□□□ -0.41
NIPAL3-201ENST00000003912 CCAR1Q8IX12 1150 aaKnown RBP12.46□□□□□ -0.41
NIPAL3-201ENST00000003912 FOXD4L6Q3SYB3 417 aaPredicted RBP12.46□□□□□ -0.42
NIPAL3-201ENST00000003912 FOXD4L3Q6VB84 417 aaPredicted RBP12.46□□□□□ -0.42
NIPAL3-201ENST00000003912 CEP89Q96ST8 783 aa12.46□□□□□ -0.42
NIPAL3-201ENST00000003912 THUMPD2Q9BTF0 503 aaKnown RBP12.46□□□□□ -0.42
NIPAL3-201ENST00000003912 DCTN1Q14203 1278 aa12.45□□□□□ -0.42
NIPAL3-201ENST00000003912 SKOR2Q2VWA4 1001 aaPredicted RBP12.45□□□□□ -0.42
NIPAL3-201ENST00000003912 RPAP2Q8IXW5 612 aaPredicted RBP12.45□□□□□ -0.42
NIPAL3-201ENST00000003912 NAP1L5Q96NT1 182 aaPredicted RBP12.45□□□□□ -0.42
NIPAL3-201ENST00000003912 VPS37CA5D8V6 355 aaPredicted RBP12.45□□□□□ -0.42
NIPAL3-201ENST00000003912 MTMR7Q9Y216 660 aa12.45□□□□□ -0.42
NIPAL3-201ENST00000003912 TBX22Q9Y458 520 aa12.45□□□□□ -0.42
NIPAL3-201ENST00000003912 ABCA5Q8WWZ7 1642 aa12.45□□□□□ -0.42
NIPAL3-201ENST00000003912 PPIP5K1Q6PFW1 1433 aa12.45□□□□□ -0.42
NIPAL3-201ENST00000003912 SLFN5Q08AF3 891 aa12.45□□□□□ -0.42
NIPAL3-201ENST00000003912 HYPKQ9NX55 129 aa12.45□□□□□ -0.42
NIPAL3-201ENST00000003912 AACSQ86V21 672 aa12.44□□□□□ -0.42
NIPAL3-201ENST00000003912 PDZRN3Q9UPQ7 1066 aa12.44□□□□□ -0.42
NIPAL3-201ENST00000003912 DDX49Q9Y6V7 483 aaKnown RBP12.44□□□□□ -0.42
NIPAL3-201ENST00000003912 TSR1Q2NL82 804 aaKnown RBP12.44□□□□□ -0.42
NIPAL3-201ENST00000003912 BECN2A8MW95 431 aa12.44□□□□□ -0.42
NIPAL3-201ENST00000003912 AK7Q96M32 723 aa12.44□□□□□ -0.42
NIPAL3-201ENST00000003912 GOLGA6L19H0YKK7 550 aa12.44□□□□□ -0.42
NIPAL3-201ENST00000003912 DBF4Q9UBU7 674 aaPredicted RBP12.44□□□□□ -0.42
NIPAL3-201ENST00000003912 PTPRKQ15262 1439 aa12.44□□□□□ -0.42
NIPAL3-201ENST00000003912 ALDH1L2Q3SY69 923 aa12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms