RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 NFS1Q9Y697 457 aa4.7□□□□□ -1.66
SCN1A-220ENST00000641603 AK9Q5TCS8 1911 aa4.7□□□□□ -1.66
SCN1A-220ENST00000641603 CYP3A7-CYP3A51PA0A087WV96 503 aa4.7□□□□□ -1.66
SCN1A-220ENST00000641603 PCP4L1A6NKN8 68 aa4.7□□□□□ -1.66
SCN1A-220ENST00000641603 M0R233 179 aa4.7□□□□□ -1.66
SCN1A-220ENST00000641603 ATMINO43313 823 aaPredicted RBP4.7□□□□□ -1.66
SCN1A-220ENST00000641603 OAS1P00973 400 aaKnown RBP4.7□□□□□ -1.66
SCN1A-220ENST00000641603 CDH1P12830 882 aa4.7□□□□□ -1.66
SCN1A-220ENST00000641603 CYP3A7P24462 503 aa4.7□□□□□ -1.66
SCN1A-220ENST00000641603 AGTR1P30556 359 aa4.7□□□□□ -1.66
SCN1A-220ENST00000641603 E2F2Q14209 437 aa4.7□□□□□ -1.66
SCN1A-220ENST00000641603 NFE2Q16621 373 aaPredicted RBP4.7□□□□□ -1.66
SCN1A-220ENST00000641603 TBC1D25Q3MII6 688 aa4.7□□□□□ -1.66
SCN1A-220ENST00000641603 SPDYE2Q495Y8 402 aa4.7□□□□□ -1.66
SCN1A-220ENST00000641603 USP39Q53GS9 565 aaKnown RBP4.7□□□□□ -1.66
SCN1A-220ENST00000641603 TPRG1LQ5T0D9 272 aa4.7□□□□□ -1.66
SCN1A-220ENST00000641603 ZYG11AQ6WRX3 759 aa4.7□□□□□ -1.66
SCN1A-220ENST00000641603 NIPA1Q7RTP0 329 aa4.7□□□□□ -1.66
SCN1A-220ENST00000641603 ATG9AQ7Z3C6 839 aa4.7□□□□□ -1.66
SCN1A-220ENST00000641603 PSTKQ8IV42 348 aaKnown RBP4.7□□□□□ -1.66
SCN1A-220ENST00000641603 ABI1Q8IZP0 508 aa4.7□□□□□ -1.66
SCN1A-220ENST00000641603 OR5K1Q8NHB7 308 aa4.7□□□□□ -1.66
SCN1A-220ENST00000641603 CPA5Q8WXQ8 436 aa4.7□□□□□ -1.66
SCN1A-220ENST00000641603 SLC39A8Q9C0K1 460 aa4.7□□□□□ -1.66
SCN1A-220ENST00000641603 POLR3FQ9H1D9 316 aaPredicted RBP4.7□□□□□ -1.66
SCN1A-220ENST00000641603 ZC3H13Q5T200 1668 aaKnown RBP4.69□□□□□ -1.66
SCN1A-220ENST00000641603 PIGBOS1A0A0B4J2F0 54 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 CLCA1A8K7I4 914 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 PSMD11O00231 422 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 ZNF682O95780 498 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 CTSKP43235 329 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 MAPK9P45984 424 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 RPS5P46782 204 aaKnown RBP4.69□□□□□ -1.66
SCN1A-220ENST00000641603 FAM189A2Q15884 450 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 ANXA8L1Q5VT79 327 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 SPESP1Q6UW49 350 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 CATSPER4Q7RTX7 472 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 FAM109AQ8N4B1 249 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 GMCL1Q96IK5 515 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 SLC30A2Q9BRI3 323 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 MRPL9Q9BYD2 267 aaKnown RBP4.69□□□□□ -1.66
SCN1A-220ENST00000641603 SP110Q9HB58 689 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 FARSBQ9NSD9 589 aaKnown RBP4.69□□□□□ -1.66
SCN1A-220ENST00000641603 TMEM5Q9Y2B1 443 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 SPATA31D1Q6ZQQ2 1576 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 GRXCR2A6NFK2 248 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 SRPRAP08240 638 aaKnown RBP4.69□□□□□ -1.66
SCN1A-220ENST00000641603 RORCP51449 518 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 CBLBQ13191 982 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 BRMS1LQ5PSV4 323 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 CYP2R1Q6VVX0 501 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 PHF13Q86YI8 300 aaPredicted RBP4.69□□□□□ -1.66
SCN1A-220ENST00000641603 OR8H3Q8N146 312 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 C7orf43Q8WVR3 580 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 STON2Q8WXE9 905 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 JPH3Q8WXH2 748 aaPredicted RBP4.69□□□□□ -1.66
SCN1A-220ENST00000641603 KLHL6Q8WZ60 621 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 CD101Q93033 1021 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 SLITRK1Q96PX8 696 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 GSDMCQ9BYG8 508 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 ZNF222Q9UK12 451 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 ZNF510Q9Y2H8 683 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 SPATA31A6Q5VVP1 1343 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 HMGN1P05114 100 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 MATN1P21941 496 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 ETV6P41212 452 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 GMPSP49915 693 aaPredicted RBP4.69□□□□□ -1.66
SCN1A-220ENST00000641603 MTMR1Q13613 665 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 NCOA4Q13772 614 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 GDPGP1Q6ZNW5 385 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 GPALPP1Q8IXQ4 340 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 CDYL2Q8N8U2 506 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 MFSD2AQ8NA29 543 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 VANGL1Q8TAA9 524 aaPredicted RBP4.69□□□□□ -1.66
SCN1A-220ENST00000641603 SHC3Q92529 594 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 DIRAS2Q96HU8 199 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 GJB4Q9NTQ9 266 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 BBOX1O75936 387 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 HTR2AP28223 471 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 ACADLP28330 430 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 ZNF543Q08ER8 600 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 GIT2Q14161 759 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 SPDYE7PQ495Y7 208 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 FAM76BQ5HYJ3 339 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 MPP7Q5T2T1 576 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 ARHGAP36Q6ZRI8 547 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 TRMT1LQ7Z2T5 733 aaKnown RBP4.69□□□□□ -1.66
SCN1A-220ENST00000641603 TIGD4Q8IY51 512 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 FBXO39Q8N4B4 442 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 STAG3L4Q8TBR4 150 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 FIG4Q92562 907 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 HSPBAP1Q96EW2 488 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 SEPHS2Q99611 448 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 GREM2Q9H772 168 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 HMGXB4Q9UGU5 601 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 TCRBV9S1A1TA0A576 114 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 LTA4HP09960 611 aaKnown RBP4.69□□□□□ -1.66
SCN1A-220ENST00000641603 DGCR6Q14129 220 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 PNCKQ6P2M8 343 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 EPHX4Q8IUS5 362 aa4.69□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms