RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 ERO1BQ86YB8 467 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 PM20D2Q8IYS1 436 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 MTURNQ8N3F0 131 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 SH2D3CQ8N5H7 860 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 BHLHE22Q8NFJ8 381 aaPredicted RBP2.8□□□□□ -1.96
SCN1A-219ENST00000641575 TTLQ8NG68 377 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 GRPEL2Q8TAA5 225 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 IER2Q9BTL4 223 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 SLC19A3Q9BZV2 496 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 ZCWPW1Q9H0M4 648 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 NELFAQ9H3P2 528 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 WDR55Q9H6Y2 383 aaPredicted RBP2.8□□□□□ -1.96
SCN1A-219ENST00000641575 GPAMQ9HCL2 828 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 TMEM138Q9NPI0 162 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 SLAMF7Q9NQ25 335 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 BFARQ9NZS9 450 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 MKLN1Q9UL63 735 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 PRELID3BQ9Y3B1 194 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 A6NCN8 305 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 NT5C1B-RDH14C9J2C7 533 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 LIN7AO14910 233 aaPredicted RBP2.8□□□□□ -1.96
SCN1A-219ENST00000641575 KCNQ2O43526 872 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 NFATC1O95644 943 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 ENDOUP21128 410 aaKnown RBP2.8□□□□□ -1.96
SCN1A-219ENST00000641575 SDC4P31431 198 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 RPL22P35268 128 aaKnown RBP2.8□□□□□ -1.96
SCN1A-219ENST00000641575 TCF7P36402 384 aaPredicted RBP2.8□□□□□ -1.96
SCN1A-219ENST00000641575 GRB14Q14449 540 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 SLC51BQ86UW2 128 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 GPALPP1Q8IXQ4 340 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP2.8□□□□□ -1.96
SCN1A-219ENST00000641575 CENPLQ8N0S6 344 aaPredicted RBP2.8□□□□□ -1.96
SCN1A-219ENST00000641575 IL31RAQ8NI17 732 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 S100ZQ8WXG8 99 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 SGSM3Q96HU1 749 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 NECTIN4Q96NY8 510 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 PLEKHG4BQ96PX9 1271 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 RTP3Q9BQQ7 232 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 DDX18Q9NVP1 670 aaKnown RBP2.8□□□□□ -1.96
SCN1A-219ENST00000641575 FANCLQ9NW38 375 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 SPG21Q9NZD8 308 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 CHPF2Q9P2E5 772 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 KIAA1210Q9ULL0 1709 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 MAGI3Q5TCQ9 1506 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 MAGI2Q86UL8 1455 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 LOC100506127A0A0U1RQW1 187 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 MATN2O00339 956 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 YKT6O15498 198 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 SORBS3O60504 671 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 ASLP04424 464 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 IFNA16P05015 189 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 THEGLP0DJG4 465 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 ATP4AP20648 1035 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 PSMA2P25787 234 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 PTX3P26022 381 aaPredicted RBP2.8□□□□□ -1.96
SCN1A-219ENST00000641575 SLC9A3P48764 834 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 CEBPGP53567 150 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 NCOA4Q13772 614 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 SPIDRQ14159 915 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 DSC3Q14574 896 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 SSX2Q16385 188 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 C4orf46Q504U0 113 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 TOR1AIP1Q5JTV8 583 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 C1orf94Q6P1W5 598 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 TAF2Q6P1X5 1199 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 ZCCHC12Q6PEW1 402 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 SEPT12Q8IYM1 358 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 LSM14AQ8ND56 463 aaKnown RBP2.8□□□□□ -1.96
SCN1A-219ENST00000641575 RPLP0P6Q8NHW5 317 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 GRIP2Q9C0E4 1043 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 SH3BGRL3Q9H299 93 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 OSGEPL1Q9H4B0 414 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 MTPAPQ9NVV4 582 aaKnown RBP eCLIP2.8□□□□□ -1.96
SCN1A-219ENST00000641575 CKLFQ9UBR5 152 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 ZNF221Q9UK13 617 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 ZNRF3Q9ULT6 936 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 AP4E1Q9UPM8 1137 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 TMEM5Q9Y2B1 443 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 RNF17Q9BXT8 1623 aaKnown RBP2.8□□□□□ -1.96
SCN1A-219ENST00000641575 NPC1L1Q9UHC9 1359 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 NCKAP5LQ9HCH0 1330 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 MAGEB16A2A368 324 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 RNF113AO15541 343 aaKnown RBP2.8□□□□□ -1.96
SCN1A-219ENST00000641575 PPM1BO75688 479 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 EPN2O95208 641 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 DBTP11182 482 aaKnown RBP2.8□□□□□ -1.96
SCN1A-219ENST00000641575 TCF4P15884 667 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 PLA2G4AP47712 749 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 ITGA8P53708 1063 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 STXBP1P61764 594 aaKnown RBP2.8□□□□□ -1.96
SCN1A-219ENST00000641575 PRKG2Q13237 762 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 PUM1Q14671 1186 aaKnown RBP eCLIP2.8□□□□□ -1.96
SCN1A-219ENST00000641575 C2orf76Q3KRA6 126 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 EFHC1Q5JVL4 640 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 FAXCQ5TGI0 409 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 REP15Q6BDI9 236 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 HMBOX1Q6NT76 420 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 CHSY1Q86X52 802 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 PHYKPLQ8IUZ5 450 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 ARID3BQ8IVW6 561 aaPredicted RBP2.8□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms