RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 MRPS21P82921 87 aaKnown RBP5.06□□□□□ -1.6
SCN1A-218ENST00000640036 EIF4HQ15056 248 aaKnown RBP5.06□□□□□ -1.6
SCN1A-218ENST00000640036 DLG2Q15700 870 aa5.06□□□□□ -1.6
SCN1A-218ENST00000640036 SARM1Q6SZW1 724 aa5.06□□□□□ -1.6
SCN1A-218ENST00000640036 PRSS58Q8IYP2 241 aa5.06□□□□□ -1.6
SCN1A-218ENST00000640036 RBM18Q96H35 190 aaKnown RBP5.06□□□□□ -1.6
SCN1A-218ENST00000640036 FMO2Q99518 471 aa5.06□□□□□ -1.6
SCN1A-218ENST00000640036 CDX2Q99626 313 aaPredicted RBP5.06□□□□□ -1.6
SCN1A-218ENST00000640036 CLEC4MQ9H2X3 399 aaPredicted RBP5.06□□□□□ -1.6
SCN1A-218ENST00000640036 ATPIF1Q9UII2 106 aa5.06□□□□□ -1.6
SCN1A-218ENST00000640036 ARL2BPQ9Y2Y0 163 aa5.06□□□□□ -1.6
SCN1A-218ENST00000640036 A0A096LPK6 155 aa5.05□□□□□ -1.6
SCN1A-218ENST00000640036 PEX10O60683 326 aa5.05□□□□□ -1.6
SCN1A-218ENST00000640036 SNX4O95219 450 aa5.05□□□□□ -1.6
SCN1A-218ENST00000640036 SNAI1O95863 264 aaPredicted RBP5.05□□□□□ -1.6
SCN1A-218ENST00000640036 KRT31Q15323 416 aa5.05□□□□□ -1.6
SCN1A-218ENST00000640036 ABHD17BQ5VST6 288 aa5.05□□□□□ -1.6
SCN1A-218ENST00000640036 C17orf64Q86WR6 236 aa5.05□□□□□ -1.6
SCN1A-218ENST00000640036 CCDC126Q96EE4 140 aa5.05□□□□□ -1.6
SCN1A-218ENST00000640036 TMEM60Q9H2L4 133 aa5.05□□□□□ -1.6
SCN1A-218ENST00000640036 KCTD10Q9H3F6 313 aa5.05□□□□□ -1.6
SCN1A-218ENST00000640036 CCDC134Q9H6E4 229 aa5.05□□□□□ -1.6
SCN1A-218ENST00000640036 GALNT8Q9NY28 637 aa5.05□□□□□ -1.6
SCN1A-218ENST00000640036 PRKAG3Q9UGI9 489 aa5.05□□□□□ -1.6
SCN1A-218ENST00000640036 GPR34Q9UPC5 381 aa5.05□□□□□ -1.6
SCN1A-218ENST00000640036 KCNE2Q9Y6J6 123 aa5.05□□□□□ -1.6
SCN1A-218ENST00000640036 MYH7P12883 1935 aa5.05□□□□□ -1.6
SCN1A-218ENST00000640036 TMEM150BA6NC51 233 aa5.05□□□□□ -1.6
SCN1A-218ENST00000640036 TMEM114B3SHH9 223 aa5.05□□□□□ -1.6
SCN1A-218ENST00000640036 H0Y858 1186 aa5.05□□□□□ -1.6
SCN1A-218ENST00000640036 WWP2O00308 870 aa5.05□□□□□ -1.6
SCN1A-218ENST00000640036 KIAA0355O15063 1070 aa5.05□□□□□ -1.6
SCN1A-218ENST00000640036 FOXP2O15409 715 aa5.05□□□□□ -1.6
SCN1A-218ENST00000640036 FGGP02679 453 aa5.05□□□□□ -1.6
SCN1A-218ENST00000640036 ITGA3P26006 1051 aa5.05□□□□□ -1.6
SCN1A-218ENST00000640036 ABL2P42684 1182 aa5.05□□□□□ -1.6
SCN1A-218ENST00000640036 HNMTP50135 292 aa5.05□□□□□ -1.6
SCN1A-218ENST00000640036 LPIN1Q14693 890 aa5.05□□□□□ -1.6
SCN1A-218ENST00000640036 SLC30A9Q6PML9 568 aa5.05□□□□□ -1.6
SCN1A-218ENST00000640036 MAMDC4Q6UXC1 1216 aa5.05□□□□□ -1.6
SCN1A-218ENST00000640036 DCP2Q8IU60 420 aaKnown RBP5.05□□□□□ -1.6
SCN1A-218ENST00000640036 CCNJLQ8IV13 435 aa5.05□□□□□ -1.6
SCN1A-218ENST00000640036 RAVER1Q8IY67 606 aaKnown RBP5.05□□□□□ -1.6
SCN1A-218ENST00000640036 DIS3LQ8TF46 1054 aaKnown RBP5.05□□□□□ -1.6
SCN1A-218ENST00000640036 TBCBQ99426 244 aa5.05□□□□□ -1.6
SCN1A-218ENST00000640036 ADAM30Q9UKF2 790 aa5.05□□□□□ -1.6
SCN1A-218ENST00000640036 USP15Q9Y4E8 981 aaPredicted RBP5.05□□□□□ -1.6
SCN1A-218ENST00000640036 SMCHD1A6NHR9 2005 aa5.05□□□□□ -1.6
SCN1A-218ENST00000640036 EVPLQ92817 2033 aa5.05□□□□□ -1.6
SCN1A-218ENST00000640036 MATN4O95460 622 aa5.05□□□□□ -1.6
SCN1A-218ENST00000640036 FTCDO95954 541 aa5.05□□□□□ -1.6
SCN1A-218ENST00000640036 CNR2P34972 360 aa5.05□□□□□ -1.6
SCN1A-218ENST00000640036 BTKQ06187 659 aa5.05□□□□□ -1.6
SCN1A-218ENST00000640036 ITGADQ13349 1161 aa5.05□□□□□ -1.6
SCN1A-218ENST00000640036 ADGRA1Q86SQ6 560 aa5.05□□□□□ -1.6
SCN1A-218ENST00000640036 SERINC5Q86VE9 423 aa5.05□□□□□ -1.6
SCN1A-218ENST00000640036 SEMA6BQ9H3T3 888 aa5.05□□□□□ -1.6
SCN1A-218ENST00000640036 PDLIM7Q9NR12 457 aa5.05□□□□□ -1.6
SCN1A-218ENST00000640036 ARL15Q9NXU5 204 aa5.05□□□□□ -1.6
SCN1A-218ENST00000640036 CTNNAL1Q9UBT7 734 aa5.05□□□□□ -1.6
SCN1A-218ENST00000640036 LZTS1Q9Y250 596 aa5.05□□□□□ -1.6
SCN1A-218ENST00000640036 TBC1D30Q9Y2I9 924 aa5.05□□□□□ -1.6
SCN1A-218ENST00000640036 A0A1B0GTW7 788 aa5.05□□□□□ -1.6
SCN1A-218ENST00000640036 FAM234BA2RU67 622 aa5.05□□□□□ -1.6
SCN1A-218ENST00000640036 XPO1O14980 1071 aaKnown RBP5.05□□□□□ -1.6
SCN1A-218ENST00000640036 S100A9P06702 114 aaKnown RBP5.05□□□□□ -1.6
SCN1A-218ENST00000640036 GPR15P49685 360 aa5.05□□□□□ -1.6
SCN1A-218ENST00000640036 SERPINB9P50453 376 aa5.05□□□□□ -1.6
SCN1A-218ENST00000640036 LILRA4P59901 499 aa5.05□□□□□ -1.6
SCN1A-218ENST00000640036 ALDH6A1Q02252 535 aaKnown RBP5.05□□□□□ -1.6
SCN1A-218ENST00000640036 KCNMA1Q12791 1236 aa5.05□□□□□ -1.6
SCN1A-218ENST00000640036 PARP15Q460N3 678 aa5.05□□□□□ -1.6
SCN1A-218ENST00000640036 ATXN7L2Q5T6C5 722 aaPredicted RBP5.05□□□□□ -1.6
SCN1A-218ENST00000640036 GALNT7Q86SF2 657 aa5.05□□□□□ -1.6
SCN1A-218ENST00000640036 GSPT2Q8IYD1 628 aaKnown RBP5.05□□□□□ -1.6
SCN1A-218ENST00000640036 MRPL43Q8N983 215 aaKnown RBP5.05□□□□□ -1.6
SCN1A-218ENST00000640036 PRICKLE1Q96MT3 831 aaPredicted RBP5.05□□□□□ -1.6
SCN1A-218ENST00000640036 DACH2Q96NX9 599 aa5.05□□□□□ -1.6
SCN1A-218ENST00000640036 QKIQ96PU8 341 aaKnown RBP eCLIP5.05□□□□□ -1.67e-7■■■■□ 21.5
SCN1A-218ENST00000640036 CSPG4P5Q96PW8 444 aa5.05□□□□□ -1.6
SCN1A-218ENST00000640036 FRMD8P1Q9BZ68 369 aaPredicted RBP5.05□□□□□ -1.6
SCN1A-218ENST00000640036 CCDC177Q9NQR7 707 aaPredicted RBP5.05□□□□□ -1.6
SCN1A-218ENST00000640036 GEMIN8Q9NWZ8 242 aaKnown RBP5.05□□□□□ -1.6
SCN1A-218ENST00000640036 SH3BP4Q9P0V3 963 aa5.05□□□□□ -1.6
SCN1A-218ENST00000640036 CLCA3PQ9Y6N3 262 aa5.05□□□□□ -1.6
SCN1A-218ENST00000640036 AKAP6Q13023 2319 aa5.05□□□□□ -1.6
SCN1A-218ENST00000640036 MYH3P11055 1940 aa5.05□□□□□ -1.6
SCN1A-218ENST00000640036 TMEM221A6NGB7 291 aa5.05□□□□□ -1.6
SCN1A-218ENST00000640036 EFCAB7A8K855 629 aa5.05□□□□□ -1.6
SCN1A-218ENST00000640036 M0R296 226 aa5.05□□□□□ -1.6
SCN1A-218ENST00000640036 CLDN5O00501 218 aa5.05□□□□□ -1.6
SCN1A-218ENST00000640036 TSPAN1O60635 241 aa5.05□□□□□ -1.6
SCN1A-218ENST00000640036 ATP9AO75110 1047 aa5.05□□□□□ -1.6
SCN1A-218ENST00000640036 TP53P04637 393 aaPredicted RBP5.05□□□□□ -1.6
SCN1A-218ENST00000640036 LPOP22079 712 aaPredicted RBP5.05□□□□□ -1.6
SCN1A-218ENST00000640036 ACADLP28330 430 aa5.05□□□□□ -1.6
SCN1A-218ENST00000640036 ELK3P41970 407 aa5.05□□□□□ -1.6
SCN1A-218ENST00000640036 TTPAP49638 278 aa5.05□□□□□ -1.6
SCN1A-218ENST00000640036 CDH4P55283 916 aa5.05□□□□□ -1.6
SCN1A-218ENST00000640036 RBM10P98175 930 aaKnown RBP5.05□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms