RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 MARVELD3Q96A59 401 aa5.78□□□□□ -1.48
SCN1A-216ENST00000637968 CAMKK2Q96RR4 588 aa5.78□□□□□ -1.48
SCN1A-216ENST00000637968 CRAMP1Q96RY5 1269 aa5.78□□□□□ -1.48
SCN1A-216ENST00000637968 PIP5K1AQ99755 562 aa5.78□□□□□ -1.48
SCN1A-216ENST00000637968 THAP2Q9H0W7 228 aa5.78□□□□□ -1.48
SCN1A-216ENST00000637968 BLOC1S4Q9NUP1 217 aa5.78□□□□□ -1.48
SCN1A-216ENST00000637968 OLAHQ9NV23 265 aa5.78□□□□□ -1.48
SCN1A-216ENST00000637968 CACNA2D2Q9NY47 1150 aa5.78□□□□□ -1.48
SCN1A-216ENST00000637968 GGA1Q9UJY5 639 aa5.78□□□□□ -1.48
SCN1A-216ENST00000637968 AP4E1Q9UPM8 1137 aa5.78□□□□□ -1.48
SCN1A-216ENST00000637968 ACTL7AQ9Y615 435 aa5.78□□□□□ -1.48
SCN1A-216ENST00000637968 NCANO14594 1321 aa5.78□□□□□ -1.48
SCN1A-216ENST00000637968 MAP3K4Q9Y6R4 1608 aa5.78□□□□□ -1.48
SCN1A-216ENST00000637968 MYH6P13533 1939 aa5.78□□□□□ -1.48
SCN1A-216ENST00000637968 PALLDQ8WX93 1383 aa5.78□□□□□ -1.48
SCN1A-216ENST00000637968 KPNA7A9QM74 516 aa5.78□□□□□ -1.48
SCN1A-216ENST00000637968 C19orf81C9J6K1 198 aa5.78□□□□□ -1.48
SCN1A-216ENST00000637968 KLF11O14901 512 aa5.78□□□□□ -1.48
SCN1A-216ENST00000637968 RNGTTO60942 597 aaKnown RBP5.78□□□□□ -1.48
SCN1A-216ENST00000637968 INHBBP09529 407 aa5.78□□□□□ -1.48
SCN1A-216ENST00000637968 CCNYL3P0C7X3 344 aa5.78□□□□□ -1.48
SCN1A-216ENST00000637968 MBL2P11226 248 aaPredicted RBP5.78□□□□□ -1.48
SCN1A-216ENST00000637968 XRCC1P18887 633 aaPredicted RBP5.78□□□□□ -1.48
SCN1A-216ENST00000637968 VAMP1P23763 118 aa5.78□□□□□ -1.48
SCN1A-216ENST00000637968 DNAJB1P25685 340 aa5.78□□□□□ -1.48
SCN1A-216ENST00000637968 KCNJ5P48544 419 aa5.78□□□□□ -1.48
SCN1A-216ENST00000637968 HCAR3P49019 387 aa5.78□□□□□ -1.48
SCN1A-216ENST00000637968 RNF4P78317 190 aa5.78□□□□□ -1.48
SCN1A-216ENST00000637968 DEFA6Q01524 100 aa5.78□□□□□ -1.48
SCN1A-216ENST00000637968 GHRHRQ02643 423 aa5.78□□□□□ -1.48
SCN1A-216ENST00000637968 BAMBIQ13145 260 aa5.78□□□□□ -1.48
SCN1A-216ENST00000637968 ADAM15Q13444 863 aa5.78□□□□□ -1.48
SCN1A-216ENST00000637968 PLCL1Q15111 1095 aa5.78□□□□□ -1.48
SCN1A-216ENST00000637968 GPR68Q15743 365 aa5.78□□□□□ -1.48
SCN1A-216ENST00000637968 FAM214AQ32MH5 1076 aa5.78□□□□□ -1.48
SCN1A-216ENST00000637968 CATSPER4Q7RTX7 472 aa5.78□□□□□ -1.48
SCN1A-216ENST00000637968 MAPKAPK5Q8IW41 473 aa5.78□□□□□ -1.48
SCN1A-216ENST00000637968 MICALL2Q8IY33 904 aa5.78□□□□□ -1.48
SCN1A-216ENST00000637968 CCDC116Q8IYX3 515 aa5.78□□□□□ -1.48
SCN1A-216ENST00000637968 ADGRF2Q8IZF7 708 aa5.78□□□□□ -1.48
SCN1A-216ENST00000637968 OFCC1Q8IZS5 231 aa5.78□□□□□ -1.48
SCN1A-216ENST00000637968 XXYLT1Q8NBI6 393 aa5.78□□□□□ -1.48
SCN1A-216ENST00000637968 OR4D10Q8NGI6 311 aa5.78□□□□□ -1.48
SCN1A-216ENST00000637968 RP9Q8TA86 221 aaKnown RBP5.78□□□□□ -1.48
SCN1A-216ENST00000637968 MARK4Q96L34 752 aa5.78□□□□□ -1.48
SCN1A-216ENST00000637968 PWWP2AQ96N64 755 aa5.78□□□□□ -1.48
SCN1A-216ENST00000637968 ITM2CQ9NQX7 267 aa5.78□□□□□ -1.48
SCN1A-216ENST00000637968 DPP3Q9NY33 737 aa5.78□□□□□ -1.48
SCN1A-216ENST00000637968 GGA3Q9NZ52 723 aa5.78□□□□□ -1.48
SCN1A-216ENST00000637968 NDUFAF4Q9P032 175 aa5.78□□□□□ -1.48
SCN1A-216ENST00000637968 TRPS1Q9UHF7 1281 aa5.78□□□□□ -1.48
SCN1A-216ENST00000637968 COPS3Q9UNS2 423 aa5.78□□□□□ -1.48
SCN1A-216ENST00000637968 PEX16Q9Y5Y5 336 aa5.78□□□□□ -1.48
SCN1A-216ENST00000637968 CDC42BPGQ6DT37 1551 aa5.77□□□□□ -1.49
SCN1A-216ENST00000637968 PTGES3LE9PB15 166 aa5.77□□□□□ -1.49
SCN1A-216ENST00000637968 ERVH48-1M5A8F1 160 aa5.77□□□□□ -1.49
SCN1A-216ENST00000637968 NEMP1O14524 444 aa5.77□□□□□ -1.49
SCN1A-216ENST00000637968 BCAS1O75363 584 aaPredicted RBP5.77□□□□□ -1.49
SCN1A-216ENST00000637968 MED24O75448 989 aa5.77□□□□□ -1.49
SCN1A-216ENST00000637968 LDOC1O95751 146 aaPredicted RBP5.77□□□□□ -1.49
SCN1A-216ENST00000637968 SLC9A1P19634 815 aa5.77□□□□□ -1.49
SCN1A-216ENST00000637968 MYF6P23409 242 aa5.77□□□□□ -1.49
SCN1A-216ENST00000637968 L1CAMP32004 1257 aa5.77□□□□□ -1.49
SCN1A-216ENST00000637968 SLC1A6P48664 564 aa5.77□□□□□ -1.49
SCN1A-216ENST00000637968 HOXA1P49639 335 aaPredicted RBP5.77□□□□□ -1.49
SCN1A-216ENST00000637968 TIMM10P62072 90 aa5.77□□□□□ -1.49
SCN1A-216ENST00000637968 GTF2IP78347 998 aa5.77□□□□□ -1.49
SCN1A-216ENST00000637968 IL1RL1Q01638 556 aa5.77□□□□□ -1.49
SCN1A-216ENST00000637968 KLF10Q13118 480 aa5.77□□□□□ -1.49
SCN1A-216ENST00000637968 FGL2Q14314 439 aa5.77□□□□□ -1.49
SCN1A-216ENST00000637968 EMC2Q15006 297 aa5.77□□□□□ -1.49
SCN1A-216ENST00000637968 HIST2H2ACQ16777 129 aaPredicted RBP5.77□□□□□ -1.49
SCN1A-216ENST00000637968 ZNF792Q3KQV3 632 aa5.77□□□□□ -1.49
SCN1A-216ENST00000637968 SEL1L3Q68CR1 1132 aa5.77□□□□□ -1.49
SCN1A-216ENST00000637968 CYP2R1Q6VVX0 501 aa5.77□□□□□ -1.49
SCN1A-216ENST00000637968 RRM2BQ7LG56 351 aa5.77□□□□□ -1.49
SCN1A-216ENST00000637968 NIPA1Q7RTP0 329 aa5.77□□□□□ -1.49
SCN1A-216ENST00000637968 SSX9Q7RTT3 188 aa5.77□□□□□ -1.49
SCN1A-216ENST00000637968 CPNE9Q8IYJ1 553 aa5.77□□□□□ -1.49
SCN1A-216ENST00000637968 DSELQ8IZU8 1212 aa5.77□□□□□ -1.49
SCN1A-216ENST00000637968 PGAM4Q8N0Y7 254 aa5.77□□□□□ -1.49
SCN1A-216ENST00000637968 AGBL3Q8NEM8 1001 aa5.77□□□□□ -1.49
SCN1A-216ENST00000637968 KBTBD8Q8NFY9 601 aa5.77□□□□□ -1.49
SCN1A-216ENST00000637968 MAGEE2Q8TD90 523 aaPredicted RBP5.77□□□□□ -1.49
SCN1A-216ENST00000637968 RASGRP4Q8TDF6 673 aa5.77□□□□□ -1.49
SCN1A-216ENST00000637968 ALG3Q92685 438 aa5.77□□□□□ -1.49
SCN1A-216ENST00000637968 DSN1Q9H410 356 aa5.77□□□□□ -1.49
SCN1A-216ENST00000637968 RANBP3Q9H6Z4 567 aaPredicted RBP5.77□□□□□ -1.49
SCN1A-216ENST00000637968 COPRSQ9NQ92 184 aa5.77□□□□□ -1.49
SCN1A-216ENST00000637968 PPP1R14DQ9NXH3 145 aa5.77□□□□□ -1.49
SCN1A-216ENST00000637968 SMPD3Q9NY59 655 aaPredicted RBP5.77□□□□□ -1.49
SCN1A-216ENST00000637968 RIMS3Q9UJD0 308 aa5.77□□□□□ -1.49
SCN1A-216ENST00000637968 COPG1Q9Y678 874 aaKnown RBP5.77□□□□□ -1.49
SCN1A-216ENST00000637968 A0A0G2JLW4 131 aa5.77□□□□□ -1.49
SCN1A-216ENST00000637968 ZNF780AO75290 641 aaPredicted RBP5.77□□□□□ -1.49
SCN1A-216ENST00000637968 AVILO75366 819 aa5.77□□□□□ -1.49
SCN1A-216ENST00000637968 CRTAPO75718 401 aaPredicted RBP5.77□□□□□ -1.49
SCN1A-216ENST00000637968 PDHA2P29803 388 aa5.77□□□□□ -1.49
SCN1A-216ENST00000637968 PPP3CCP48454 512 aa5.77□□□□□ -1.49
SCN1A-216ENST00000637968 KPNA2P52292 529 aaKnown RBP5.77□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms