RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 SPAG6O75602 509 aa20.27■□□□□ 0.84
CLN3-250ENST00000636839 ALDH1A2O94788 518 aa20.27■□□□□ 0.84
CLN3-250ENST00000636839 KCNA5P22460 613 aa20.27■□□□□ 0.84
CLN3-250ENST00000636839 HPDP32754 393 aaPredicted RBP20.27■□□□□ 0.84
CLN3-250ENST00000636839 SLC20A2Q08357 652 aa20.27■□□□□ 0.84
CLN3-250ENST00000636839 PTPRNQ16849 979 aa20.27■□□□□ 0.84
CLN3-250ENST00000636839 TNFAIP8L3Q5GJ75 292 aa20.27■□□□□ 0.84
CLN3-250ENST00000636839 C22orf39Q6P5X5 142 aa20.27■□□□□ 0.84
CLN3-250ENST00000636839 Q6ZVU0 165 aa20.27■□□□□ 0.84
CLN3-250ENST00000636839 LPCAT1Q8NF37 534 aa20.27■□□□□ 0.84
CLN3-250ENST00000636839 BLOC1S5Q8TDH9 187 aa20.27■□□□□ 0.84
CLN3-250ENST00000636839 SLC25A13Q9UJS0 675 aa20.27■□□□□ 0.84
CLN3-250ENST00000636839 FAM159BA6NKW6 160 aa20.27■□□□□ 0.84
CLN3-250ENST00000636839 CDH16O75309 829 aa20.27■□□□□ 0.84
CLN3-250ENST00000636839 USP1O94782 785 aa20.27■□□□□ 0.84
CLN3-250ENST00000636839 NDST3O95803 873 aa20.27■□□□□ 0.84
CLN3-250ENST00000636839 EPOP01588 193 aa20.27■□□□□ 0.84
CLN3-250ENST00000636839 IVLP07476 585 aa20.27■□□□□ 0.84
CLN3-250ENST00000636839 KLHL38Q2WGJ6 581 aa20.27■□□□□ 0.84
CLN3-250ENST00000636839 AGBL2Q5U5Z8 902 aa20.27■□□□□ 0.84
CLN3-250ENST00000636839 CCNJLQ8IV13 435 aa20.27■□□□□ 0.84
CLN3-250ENST00000636839 RMDN1Q96DB5 314 aa20.27■□□□□ 0.84
CLN3-250ENST00000636839 MYO19Q96H55 970 aa20.27■□□□□ 0.84
CLN3-250ENST00000636839 AGAP2Q99490 1192 aa20.27■□□□□ 0.84
CLN3-250ENST00000636839 GAS2L1Q99501 681 aaPredicted RBP20.27■□□□□ 0.84
CLN3-250ENST00000636839 NAT9Q9BTE0 207 aa20.27■□□□□ 0.84
CLN3-250ENST00000636839 ZDHHC4Q9NPG8 344 aa20.27■□□□□ 0.84
CLN3-250ENST00000636839 HAUS2Q9NVX0 235 aa20.27■□□□□ 0.84
CLN3-250ENST00000636839 PCDHB9Q9Y5E1 797 aa20.27■□□□□ 0.84
CLN3-250ENST00000636839 PSAT1Q9Y617 370 aa20.27■□□□□ 0.84
CLN3-250ENST00000636839 ARL5AQ9Y689 179 aa20.27■□□□□ 0.84
CLN3-250ENST00000636839 FAM169AQ9Y6X4 670 aa20.27■□□□□ 0.84
CLN3-250ENST00000636839 MAGEB16A2A368 324 aa20.26■□□□□ 0.83
CLN3-250ENST00000636839 AP3B1O00203 1094 aa20.26■□□□□ 0.83
CLN3-250ENST00000636839 GSTA2P09210 222 aa20.26■□□□□ 0.83
CLN3-250ENST00000636839 GJA4P35212 333 aa20.26■□□□□ 0.83
CLN3-250ENST00000636839 MSH2P43246 934 aa20.26■□□□□ 0.83
CLN3-250ENST00000636839 SOX9P48436 509 aa20.26■□□□□ 0.83
CLN3-250ENST00000636839 DMC1Q14565 340 aa20.26■□□□□ 0.83
CLN3-250ENST00000636839 CNGA3Q16281 694 aa20.26■□□□□ 0.83
CLN3-250ENST00000636839 SPANXN3Q5MJ09 141 aa20.26■□□□□ 0.83
CLN3-250ENST00000636839 DPY19L3Q6ZPD9 716 aa20.26■□□□□ 0.83
CLN3-250ENST00000636839 PNPLA1Q8N8W4 532 aa20.26■□□□□ 0.83
CLN3-250ENST00000636839 SERBP1Q8NC51 408 aaKnown RBP eCLIP20.26■□□□□ 0.83
CLN3-250ENST00000636839 CHST14Q8NCH0 376 aa20.26■□□□□ 0.83
CLN3-250ENST00000636839 OR2AP1Q8NGE2 309 aa20.26■□□□□ 0.83
CLN3-250ENST00000636839 SLC44A1Q8WWI5 657 aa20.26■□□□□ 0.83
CLN3-250ENST00000636839 HECAQ9UBI9 543 aaPredicted RBP20.26■□□□□ 0.83
CLN3-250ENST00000636839 HMGB1P1B2RPK0 211 aaPredicted RBP20.26■□□□□ 0.83
CLN3-250ENST00000636839 CES1P23141 567 aa20.26■□□□□ 0.83
CLN3-250ENST00000636839 ADRA1DP25100 572 aa20.26■□□□□ 0.83
CLN3-250ENST00000636839 ARNTP27540 789 aa20.26■□□□□ 0.83
CLN3-250ENST00000636839 OPRD1P41143 372 aa20.26■□□□□ 0.83
CLN3-250ENST00000636839 HSP90AA5PQ58FG0 334 aa20.26■□□□□ 0.83
CLN3-250ENST00000636839 ADGRD1Q6QNK2 874 aa20.26■□□□□ 0.83
CLN3-250ENST00000636839 EXOC3L1Q86VI1 746 aa20.26■□□□□ 0.83
CLN3-250ENST00000636839 PPHLN1Q8NEY8 458 aaKnown RBP20.26■□□□□ 0.83
CLN3-250ENST00000636839 CERS2Q96G23 380 aa20.26■□□□□ 0.83
CLN3-250ENST00000636839 DEC1Q9P2X7 70 aa20.26■□□□□ 0.83
CLN3-250ENST00000636839 LGALS13Q9UHV8 139 aa20.26■□□□□ 0.83
CLN3-250ENST00000636839 SLC27A6Q9Y2P4 619 aa20.26■□□□□ 0.83
CLN3-250ENST00000636839 DENND4AQ7Z401 1863 aa20.25■□□□□ 0.83
CLN3-250ENST00000636839 ANKRD36A6QL64 1941 aa20.25■□□□□ 0.83
CLN3-250ENST00000636839 COL4A3Q01955 1670 aa20.25■□□□□ 0.83
CLN3-250ENST00000636839 A0A1W2PPM1 405 aa20.25■□□□□ 0.83
CLN3-250ENST00000636839 LDB2O43679 373 aa20.25■□□□□ 0.83
CLN3-250ENST00000636839 HLA-DPA1P20036 260 aa20.25■□□□□ 0.83
CLN3-250ENST00000636839 SULT2A1Q06520 285 aa20.25■□□□□ 0.83
CLN3-250ENST00000636839 LRRC6Q86X45 466 aa20.25■□□□□ 0.83
CLN3-250ENST00000636839 ZSWIM9Q86XI8 627 aa20.25■□□□□ 0.83
CLN3-250ENST00000636839 TDRPQ86YL5 185 aa20.25■□□□□ 0.83
CLN3-250ENST00000636839 ZNF557Q8N988 423 aaPredicted RBP20.25■□□□□ 0.83
CLN3-250ENST00000636839 FRS2Q8WU20 508 aa20.25■□□□□ 0.83
CLN3-250ENST00000636839 E2F7Q96AV8 911 aa20.25■□□□□ 0.83
CLN3-250ENST00000636839 TRMT61BQ9BVS5 477 aaKnown RBP20.25■□□□□ 0.83
CLN3-250ENST00000636839 FBRSL1Q9HCM7 1045 aaKnown RBP20.25■□□□□ 0.83
CLN3-250ENST00000636839 TREX1Q9NSU2 369 aa20.25■□□□□ 0.83
CLN3-250ENST00000636839 C20orf96Q9NUD7 363 aaPredicted RBP20.25■□□□□ 0.83
CLN3-250ENST00000636839 PSMC3IPQ9P2W1 217 aaPredicted RBP20.25■□□□□ 0.83
CLN3-250ENST00000636839 SLC24A2Q9UI40 661 aa20.25■□□□□ 0.83
CLN3-250ENST00000636839 KIF26AQ9ULI4 1882 aaPredicted RBP20.24■□□□□ 0.83
CLN3-250ENST00000636839 ARNTLO00327 626 aa20.24■□□□□ 0.83
CLN3-250ENST00000636839 TRAFD1O14545 582 aaPredicted RBP20.24■□□□□ 0.83
CLN3-250ENST00000636839 ECI2O75521 394 aa20.24■□□□□ 0.83
CLN3-250ENST00000636839 VAPBO95292 243 aa20.24■□□□□ 0.83
CLN3-250ENST00000636839 FGF1P05230 155 aa20.24■□□□□ 0.83
CLN3-250ENST00000636839 CTPS1P17812 591 aa20.24■□□□□ 0.83
CLN3-250ENST00000636839 ABL2P42684 1182 aa20.24■□□□□ 0.83
CLN3-250ENST00000636839 ATP1A2P50993 1020 aa20.24■□□□□ 0.83
CLN3-250ENST00000636839 HTR4Q13639 388 aa20.24■□□□□ 0.83
CLN3-250ENST00000636839 SLC14A2Q15849 920 aa20.24■□□□□ 0.83
CLN3-250ENST00000636839 MYLK3Q32MK0 819 aa20.24■□□□□ 0.83
CLN3-250ENST00000636839 PHTF2Q8N3S3 785 aa20.24■□□□□ 0.83
CLN3-250ENST00000636839 ERLEC1Q96DZ1 483 aa20.24■□□□□ 0.83
CLN3-250ENST00000636839 ELOVL2Q9NXB9 296 aa20.24■□□□□ 0.83
CLN3-250ENST00000636839 FZD6O60353 706 aa20.24■□□□□ 0.83
CLN3-250ENST00000636839 IGSF6O95976 241 aa20.24■□□□□ 0.83
CLN3-250ENST00000636839 DLDP09622 509 aaKnown RBP20.24■□□□□ 0.83
CLN3-250ENST00000636839 ARSDP51689 593 aa20.24■□□□□ 0.83
CLN3-250ENST00000636839 CCNHP51946 323 aaPredicted RBP20.24■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 69.5 ms