RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 ACADSBP45954 432 aa14.7□□□□□ -0.06
CLN3-249ENST00000636685 NFATC4Q14934 902 aa14.7□□□□□ -0.06
CLN3-249ENST00000636685 EDRF1Q3B7T1 1238 aa14.7□□□□□ -0.06
CLN3-249ENST00000636685 ZNF805Q5CZA5 627 aa14.7□□□□□ -0.06
CLN3-249ENST00000636685 DCAF17Q5H9S7 520 aaPredicted RBP14.7□□□□□ -0.06
CLN3-249ENST00000636685 TCTN3Q6NUS6 607 aa14.7□□□□□ -0.06
CLN3-249ENST00000636685 DEFB106AQ8N104 65 aa14.7□□□□□ -0.06
CLN3-249ENST00000636685 RYBPQ8N488 228 aaPredicted RBP14.7□□□□□ -0.06
CLN3-249ENST00000636685 CCDC112Q8NEF3 446 aa14.7□□□□□ -0.06
CLN3-249ENST00000636685 CXorf40AQ8TE69 158 aa14.7□□□□□ -0.06
CLN3-249ENST00000636685 STARD8Q92502 1023 aa14.7□□□□□ -0.06
CLN3-249ENST00000636685 KAT5Q92993 513 aa14.7□□□□□ -0.06
CLN3-249ENST00000636685 WRAP53Q9BUR4 548 aaKnown RBP14.7□□□□□ -0.06
CLN3-249ENST00000636685 APOOQ9BUR5 198 aa14.7□□□□□ -0.06
CLN3-249ENST00000636685 C1QTNF7Q9BXJ2 289 aa14.7□□□□□ -0.06
CLN3-249ENST00000636685 SLC4A5Q9BY07 1137 aa14.7□□□□□ -0.06
CLN3-249ENST00000636685 THAP9Q9H5L6 903 aa14.7□□□□□ -0.06
CLN3-249ENST00000636685 OCIAD1Q9NX40 245 aa14.7□□□□□ -0.06
CLN3-249ENST00000636685 COQ6Q9Y2Z9 468 aa14.7□□□□□ -0.06
CLN3-249ENST00000636685 OR1A2Q9Y585 309 aa14.7□□□□□ -0.06
CLN3-249ENST00000636685 KCNMB2Q9Y691 235 aa14.7□□□□□ -0.06
CLN3-249ENST00000636685 WIPF3A6NGB9 483 aa14.69□□□□□ -0.06
CLN3-249ENST00000636685 MKRN2OSH3BPM6 223 aa14.69□□□□□ -0.06
CLN3-249ENST00000636685 UGT2B4P06133 528 aa14.69□□□□□ -0.06
CLN3-249ENST00000636685 TCN2P20062 427 aa14.69□□□□□ -0.06
CLN3-249ENST00000636685 MPSTP25325 297 aa14.69□□□□□ -0.06
CLN3-249ENST00000636685 HTR1BP28222 390 aa14.69□□□□□ -0.06
CLN3-249ENST00000636685 ALDH4A1P30038 563 aa14.69□□□□□ -0.06
CLN3-249ENST00000636685 MAZP56270 477 aaKnown RBP14.69□□□□□ -0.06
CLN3-249ENST00000636685 ARF5P84085 180 aa14.69□□□□□ -0.06
CLN3-249ENST00000636685 NME3Q13232 169 aa14.69□□□□□ -0.06
CLN3-249ENST00000636685 CUL4AQ13619 759 aa14.69□□□□□ -0.06
CLN3-249ENST00000636685 RESP18Q5W5W9 173 aa14.69□□□□□ -0.06
CLN3-249ENST00000636685 ANKS6Q68DC2 871 aa14.69□□□□□ -0.06
CLN3-249ENST00000636685 SPECC1LQ69YQ0 1117 aa14.69□□□□□ -0.06
CLN3-249ENST00000636685 RETSATQ6NUM9 610 aa14.69□□□□□ -0.06
CLN3-249ENST00000636685 SETD3Q86TU7 594 aaPredicted RBP14.69□□□□□ -0.06
CLN3-249ENST00000636685 CCDC13Q8IYE1 715 aa14.69□□□□□ -0.06
CLN3-249ENST00000636685 NRSN1Q8IZ57 195 aa14.69□□□□□ -0.06
CLN3-249ENST00000636685 NLGN4XQ8N0W4 816 aa14.69□□□□□ -0.06
CLN3-249ENST00000636685 AGBL5Q8NDL9 886 aa14.69□□□□□ -0.06
CLN3-249ENST00000636685 NLGN4YQ8NFZ3 816 aaPredicted RBP14.69□□□□□ -0.06
CLN3-249ENST00000636685 OR1E3Q8WZA6 343 aa14.69□□□□□ -0.06
CLN3-249ENST00000636685 VOPP1Q96AW1 172 aa14.69□□□□□ -0.06
CLN3-249ENST00000636685 ARHGEF26Q96DR7 871 aa14.69□□□□□ -0.06
CLN3-249ENST00000636685 KLHL32Q96NJ5 620 aa14.69□□□□□ -0.06
CLN3-249ENST00000636685 MED15Q96RN5 788 aa14.69□□□□□ -0.06
CLN3-249ENST00000636685 ASPSCR1Q9BZE9 553 aa14.69□□□□□ -0.06
CLN3-249ENST00000636685 DPEP2Q9H4A9 486 aa14.69□□□□□ -0.06
CLN3-249ENST00000636685 MPP6Q9NZW5 540 aa14.69□□□□□ -0.06
CLN3-249ENST00000636685 KRIT1O00522 736 aa14.68□□□□□ -0.06
CLN3-249ENST00000636685 YEATS4O95619 227 aa14.68□□□□□ -0.06
CLN3-249ENST00000636685 PDGFAP04085 211 aa14.68□□□□□ -0.06
CLN3-249ENST00000636685 EPB41P11171 864 aaKnown RBP14.68□□□□□ -0.06
CLN3-249ENST00000636685 GRNP28799 593 aaKnown RBP14.68□□□□□ -0.06
CLN3-249ENST00000636685 CD1CP29017 333 aa14.68□□□□□ -0.06
CLN3-249ENST00000636685 LIMK2P53671 638 aa14.68□□□□□ -0.06
CLN3-249ENST00000636685 INPP5AQ14642 412 aa14.68□□□□□ -0.06
CLN3-249ENST00000636685 LRRC14Q15048 493 aa14.68□□□□□ -0.06
CLN3-249ENST00000636685 WSCD2Q2TBF2 565 aa14.68□□□□□ -0.06
CLN3-249ENST00000636685 EIF2S3LQ2VIR3 472 aaKnown RBP14.68□□□□□ -0.06
CLN3-249ENST00000636685 ZCWPW2Q504Y3 356 aa14.68□□□□□ -0.06
CLN3-249ENST00000636685 DCAF12Q5T6F0 453 aa14.68□□□□□ -0.06
CLN3-249ENST00000636685 FOXR2Q6PJQ5 311 aa14.68□□□□□ -0.06
CLN3-249ENST00000636685 TIPARPQ7Z3E1 657 aaKnown RBP14.68□□□□□ -0.06
CLN3-249ENST00000636685 TTC7BQ86TV6 843 aa14.68□□□□□ -0.06
CLN3-249ENST00000636685 FAM129CQ86XR2 697 aa14.68□□□□□ -0.06
CLN3-249ENST00000636685 IRF2BP1Q8IU81 584 aa14.68□□□□□ -0.06
CLN3-249ENST00000636685 ZNF683Q8IZ20 524 aa14.68□□□□□ -0.06
CLN3-249ENST00000636685 CCL4L1Q8NHW4 92 aa14.68□□□□□ -0.06
CLN3-249ENST00000636685 WDR92Q96MX6 357 aa14.68□□□□□ -0.06
CLN3-249ENST00000636685 SLC2A13Q96QE2 648 aa14.68□□□□□ -0.06
CLN3-249ENST00000636685 EFHD1Q9BUP0 239 aa14.68□□□□□ -0.06
CLN3-249ENST00000636685 SPRY4Q9C004 299 aa14.68□□□□□ -0.06
CLN3-249ENST00000636685 MRPL40Q9NQ50 206 aaKnown RBP14.68□□□□□ -0.06
CLN3-249ENST00000636685 ANLNQ9NQW6 1124 aa14.68□□□□□ -0.06
CLN3-249ENST00000636685 MRPS18BQ9Y676 258 aaKnown RBP14.68□□□□□ -0.06
CLN3-249ENST00000636685 DGKBQ9Y6T7 804 aa14.68□□□□□ -0.06
CLN3-249ENST00000636685 I6L893 689 aaPredicted RBP14.67□□□□□ -0.06
CLN3-249ENST00000636685 GRAP2O75791 330 aa14.67□□□□□ -0.06
CLN3-249ENST00000636685 CD160O95971 181 aa14.67□□□□□ -0.06
CLN3-249ENST00000636685 MAP4P27816 1152 aaKnown RBP14.67□□□□□ -0.06
CLN3-249ENST00000636685 OR1E1P30953 314 aa14.67□□□□□ -0.06
CLN3-249ENST00000636685 CSTF2P33240 577 aaKnown RBP eCLIP14.67□□□□□ -0.06
CLN3-249ENST00000636685 MC1RQ01726 317 aa14.67□□□□□ -0.06
CLN3-249ENST00000636685 SLC20A2Q08357 652 aa14.67□□□□□ -0.06
CLN3-249ENST00000636685 TRA2AQ13595 282 aaKnown RBP eCLIP14.67□□□□□ -0.06
CLN3-249ENST00000636685 NKAIN2Q5VXU1 208 aa14.67□□□□□ -0.06
CLN3-249ENST00000636685 TMEM110Q86TL2 294 aa14.67□□□□□ -0.06
CLN3-249ENST00000636685 ZNF396Q96N95 335 aaPredicted RBP14.67□□□□□ -0.06
CLN3-249ENST00000636685 TMEM168Q9H0V1 697 aa14.67□□□□□ -0.06
CLN3-249ENST00000636685 ATP13A1Q9HD20 1204 aa14.67□□□□□ -0.06
CLN3-249ENST00000636685 PCDHA7Q9UN72 937 aa14.67□□□□□ -0.06
CLN3-249ENST00000636685 KCTD3Q9Y597 815 aa14.67□□□□□ -0.06
CLN3-249ENST00000636685 ADGRG4Q8IZF6 3080 aa14.66□□□□□ -0.06
CLN3-249ENST00000636685 DRGXA6NNA5 263 aa14.66□□□□□ -0.06
CLN3-249ENST00000636685 RHPN2P1A8MT19 583 aa14.66□□□□□ -0.06
CLN3-249ENST00000636685 TIMP2P16035 220 aa14.66□□□□□ -0.06
CLN3-249ENST00000636685 COPB1P53618 953 aaKnown RBP14.66□□□□□ -0.06
CLN3-249ENST00000636685 MRPL49Q13405 166 aaKnown RBP14.66□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms