RNA–Protein interactions for RNA: ENST00000635861.1

CLN3-241, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,404 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-241ENST00000635861 UCNP55089 124 aa18.62■□□□□ 0.57
CLN3-241ENST00000635861 RPL7AP62424 266 aaKnown RBP18.62■□□□□ 0.57
CLN3-241ENST00000635861 GABREP78334 506 aa18.62■□□□□ 0.57
CLN3-241ENST00000635861 AGERQ15109 404 aa18.62■□□□□ 0.57
CLN3-241ENST00000635861 ISXQ2M1V0 245 aa18.62■□□□□ 0.57
CLN3-241ENST00000635861 TPRG1LQ5T0D9 272 aa18.62■□□□□ 0.57
CLN3-241ENST00000635861 C6orf132Q5T0Z8 1188 aa18.62■□□□□ 0.57
CLN3-241ENST00000635861 VPS36Q86VN1 386 aa18.62■□□□□ 0.57
CLN3-241ENST00000635861 MCOLN2Q8IZK6 566 aa18.62■□□□□ 0.57
CLN3-241ENST00000635861 FSTL5Q8N475 847 aaPredicted RBP18.62■□□□□ 0.57
CLN3-241ENST00000635861 ZNF641Q96N77 438 aaPredicted RBP18.62■□□□□ 0.57
CLN3-241ENST00000635861 FCRL3Q96P31 734 aaPredicted RBP18.62■□□□□ 0.57
CLN3-241ENST00000635861 TUBGCP5Q96RT8 1024 aa18.62■□□□□ 0.57
CLN3-241ENST00000635861 NCAPGQ9BPX3 1015 aa18.62■□□□□ 0.57
CLN3-241ENST00000635861 ATXN7O15265 892 aaPredicted RBP18.61■□□□□ 0.57
CLN3-241ENST00000635861 MMP20O60882 483 aa18.61■□□□□ 0.57
CLN3-241ENST00000635861 ANXA6P08133 673 aa18.61■□□□□ 0.57
CLN3-241ENST00000635861 EIF4A3P38919 411 aaKnown RBP18.61■□□□□ 0.57
CLN3-241ENST00000635861 CSNK1DP48730 415 aa18.61■□□□□ 0.57
CLN3-241ENST00000635861 TPI1P60174 286 aa18.61■□□□□ 0.57
CLN3-241ENST00000635861 PPARDQ03181 441 aa18.61■□□□□ 0.57
CLN3-241ENST00000635861 TLE3Q04726 772 aa18.61■□□□□ 0.57
CLN3-241ENST00000635861 KLHL40Q2TBA0 621 aa18.61■□□□□ 0.57
CLN3-241ENST00000635861 DEFB133Q30KQ1 61 aa18.61■□□□□ 0.57
CLN3-241ENST00000635861 PRRT3Q5FWE3 981 aa18.61■□□□□ 0.57
CLN3-241ENST00000635861 BRAT1Q6PJG6 821 aa18.61■□□□□ 0.57
CLN3-241ENST00000635861 LVRNQ6Q4G3 990 aa18.61■□□□□ 0.57
CLN3-241ENST00000635861 APTXQ7Z2E3 356 aaKnown RBP18.61■□□□□ 0.57
CLN3-241ENST00000635861 EFL1Q7Z2Z2 1120 aaKnown RBP18.61■□□□□ 0.57
CLN3-241ENST00000635861 GPR155Q7Z3F1 870 aa18.61■□□□□ 0.57
CLN3-241ENST00000635861 SPACA3Q8IXA5 215 aa18.61■□□□□ 0.57
CLN3-241ENST00000635861 ATL2Q8NHH9 583 aa18.61■□□□□ 0.57
CLN3-241ENST00000635861 HIC2Q96JB3 615 aa18.61■□□□□ 0.57
CLN3-241ENST00000635861 LGMNQ99538 433 aa18.61■□□□□ 0.57
CLN3-241ENST00000635861 KLC2Q9H0B6 622 aa18.61■□□□□ 0.57
CLN3-241ENST00000635861 SUV39H2Q9H5I1 410 aa18.61■□□□□ 0.57
CLN3-241ENST00000635861 LRRC19Q9H756 370 aa18.61■□□□□ 0.57
CLN3-241ENST00000635861 PDFQ9HBH1 243 aa18.61■□□□□ 0.57
CLN3-241ENST00000635861 THSD1Q9NS62 852 aa18.61■□□□□ 0.57
CLN3-241ENST00000635861 PARVAQ9NVD7 372 aa18.61■□□□□ 0.57
CLN3-241ENST00000635861 LHX3Q9UBR4 397 aa18.61■□□□□ 0.57
CLN3-241ENST00000635861 CFAP69A5D8W1 941 aa18.6■□□□□ 0.57
CLN3-241ENST00000635861 ALPIP09923 528 aa18.6■□□□□ 0.57
CLN3-241ENST00000635861 HTR1BP28222 390 aa18.6■□□□□ 0.57
CLN3-241ENST00000635861 MLLT3P42568 568 aaPredicted RBP18.6■□□□□ 0.57
CLN3-241ENST00000635861 ZNF135P52742 658 aaPredicted RBP18.6■□□□□ 0.57
CLN3-241ENST00000635861 LRRC14Q15048 493 aa18.6■□□□□ 0.57
CLN3-241ENST00000635861 ELOCQ15369 112 aa18.6■□□□□ 0.57
CLN3-241ENST00000635861 CDKN3Q16667 212 aa18.6■□□□□ 0.57
CLN3-241ENST00000635861 UGP2Q16851 508 aa18.6■□□□□ 0.57
CLN3-241ENST00000635861 BROXQ5VW32 411 aa18.6■□□□□ 0.57
CLN3-241ENST00000635861 ESRP1Q6NXG1 681 aaKnown RBP18.6■□□□□ 0.57
CLN3-241ENST00000635861 ERAP2Q6P179 960 aa18.6■□□□□ 0.57
CLN3-241ENST00000635861 GUSBP11Q6P575 273 aa18.6■□□□□ 0.57
CLN3-241ENST00000635861 RBM44Q6ZP01 1051 aaKnown RBP18.6■□□□□ 0.57
CLN3-241ENST00000635861 RBFAQ8N0V3 343 aa18.6■□□□□ 0.57
CLN3-241ENST00000635861 SCG3Q8WXD2 468 aaKnown RBP18.6■□□□□ 0.57
CLN3-241ENST00000635861 LRRC61Q9BV99 259 aa18.6■□□□□ 0.57
CLN3-241ENST00000635861 PCDHGA8Q9Y5G5 932 aa18.6■□□□□ 0.57
CLN3-241ENST00000635861 UNC13CQ8NB66 2214 aa18.6■□□□□ 0.57
CLN3-241ENST00000635861 CFAP46Q8IYW2 2715 aa18.6■□□□□ 0.57
CLN3-241ENST00000635861 CPED1A4D0V7 1026 aa18.59■□□□□ 0.57
CLN3-241ENST00000635861 ARHGAP42A6NI28 874 aa18.59■□□□□ 0.57
CLN3-241ENST00000635861 PRAMEF11O60813 436 aa18.59■□□□□ 0.57
CLN3-241ENST00000635861 MBD3O95983 291 aa18.59■□□□□ 0.57
CLN3-241ENST00000635861 MPOP05164 745 aa18.59■□□□□ 0.57
CLN3-241ENST00000635861 MYF5P13349 255 aa18.59■□□□□ 0.57
CLN3-241ENST00000635861 TGM2P21980 687 aa18.59■□□□□ 0.57
CLN3-241ENST00000635861 CCDC173Q0VFZ6 552 aa18.59■□□□□ 0.57
CLN3-241ENST00000635861 CYTH1Q15438 398 aa18.59■□□□□ 0.57
CLN3-241ENST00000635861 CFAP58Q5T655 872 aa18.59■□□□□ 0.57
CLN3-241ENST00000635861 FAXCQ5TGI0 409 aa18.59■□□□□ 0.57
CLN3-241ENST00000635861 PSTKQ8IV42 348 aaKnown RBP18.59■□□□□ 0.57
CLN3-241ENST00000635861 DPH1Q9BZG8 443 aa18.59■□□□□ 0.57
CLN3-241ENST00000635861 CAAP1Q9H8G2 361 aa18.59■□□□□ 0.57
CLN3-241ENST00000635861 AP4E1Q9UPM8 1137 aa18.59■□□□□ 0.57
CLN3-241ENST00000635861 ARHGEF17Q96PE2 2063 aaPredicted RBP18.59■□□□□ 0.57
CLN3-241ENST00000635861 GCATO75600 419 aa18.58■□□□□ 0.57
CLN3-241ENST00000635861 TNFAIP3P21580 790 aa18.58■□□□□ 0.57
CLN3-241ENST00000635861 HK3P52790 923 aa18.58■□□□□ 0.57
CLN3-241ENST00000635861 ADKP55263 362 aaKnown RBP18.58■□□□□ 0.57
CLN3-241ENST00000635861 RFTN1Q14699 578 aaPredicted RBP18.58■□□□□ 0.57
CLN3-241ENST00000635861 NCAPHQ15003 741 aa18.58■□□□□ 0.57
CLN3-241ENST00000635861 IRF4Q15306 451 aa18.58■□□□□ 0.57
CLN3-241ENST00000635861 LRRC73Q5JTD7 316 aa18.58■□□□□ 0.57
CLN3-241ENST00000635861 PLEKHA7Q6IQ23 1121 aa18.58■□□□□ 0.57
CLN3-241ENST00000635861 IRF2BP2Q7Z5L9 587 aa18.58■□□□□ 0.57
CLN3-241ENST00000635861 SLC35F3Q8IY50 421 aa18.58■□□□□ 0.57
CLN3-241ENST00000635861 FNIP1Q8TF40 1166 aa18.58■□□□□ 0.57
CLN3-241ENST00000635861 SYT11Q9BT88 431 aa18.58■□□□□ 0.57
CLN3-241ENST00000635861 WRAP53Q9BUR4 548 aaKnown RBP18.58■□□□□ 0.57
CLN3-241ENST00000635861 HSD3B7Q9H2F3 369 aa18.58■□□□□ 0.57
CLN3-241ENST00000635861 ASCL3Q9NQ33 180 aa18.58■□□□□ 0.57
CLN3-241ENST00000635861 MBNL1Q9NR56 388 aaKnown RBP18.58■□□□□ 0.57
CLN3-241ENST00000635861 RAI2Q9Y5P3 530 aa18.58■□□□□ 0.57
CLN3-241ENST00000635861 SCN8AQ9UQD0 1980 aa18.58■□□□□ 0.56
CLN3-241ENST00000635861 YY2O15391 372 aa18.57■□□□□ 0.56
CLN3-241ENST00000635861 RASGRP1O95267 797 aa18.57■□□□□ 0.56
CLN3-241ENST00000635861 PIGNO95427 931 aa18.57■□□□□ 0.56
CLN3-241ENST00000635861 ATP1A3P13637 1013 aa18.57■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms