RNA–Protein interactions for RNA: ENST00000620676.4

VPS13D-214, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VPS13D, Length 16,320 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-214ENST00000620676 VANGL2Q9ULK5 521 aa5.07□□□□□ -1.6
VPS13D-214ENST00000620676 TRAV6A0A075B6T7 132 aa5.07□□□□□ -1.6
VPS13D-214ENST00000620676 XPNPEP2O43895 674 aa5.07□□□□□ -1.6
VPS13D-214ENST00000620676 MSS51Q4VC12 460 aa5.07□□□□□ -1.6
VPS13D-214ENST00000620676 ZNF410Q86VK4 478 aa5.07□□□□□ -1.6
VPS13D-214ENST00000620676 ZNF358Q9NW07 568 aa5.07□□□□□ -1.6
VPS13D-214ENST00000620676 CPA4Q9UI42 421 aa5.07□□□□□ -1.6
VPS13D-214ENST00000620676 SLC27A5Q9Y2P5 690 aa5.07□□□□□ -1.6
VPS13D-214ENST00000620676 CRB1P82279 1406 aa5.07□□□□□ -1.6
VPS13D-214ENST00000620676 ERVK-25P63136 954 aa5.07□□□□□ -1.6
VPS13D-214ENST00000620676 UGT2A3Q6UWM9 527 aa5.07□□□□□ -1.6
VPS13D-214ENST00000620676 ACOT1Q86TX2 421 aa5.07□□□□□ -1.6
VPS13D-214ENST00000620676 CATSPERZQ9NTU4 200 aa5.07□□□□□ -1.6
VPS13D-214ENST00000620676 MTF2Q9Y483 593 aaPredicted RBP5.07□□□□□ -1.6
VPS13D-214ENST00000620676 CACNA1FO60840 1977 aa5.07□□□□□ -1.6
VPS13D-214ENST00000620676 ATP10BO94823 1461 aa5.07□□□□□ -1.6
VPS13D-214ENST00000620676 H2AFYO75367 372 aaKnown RBP5.07□□□□□ -1.6
VPS13D-214ENST00000620676 RFPL2O75678 378 aa5.07□□□□□ -1.6
VPS13D-214ENST00000620676 INMTO95050 263 aa5.07□□□□□ -1.6
VPS13D-214ENST00000620676 MPOP05164 745 aa5.07□□□□□ -1.6
VPS13D-214ENST00000620676 PRKACGP22612 351 aa5.07□□□□□ -1.6
VPS13D-214ENST00000620676 TRIM72Q6ZMU5 477 aa5.07□□□□□ -1.6
VPS13D-214ENST00000620676 IGFN1Q86VF2 1251 aa5.07□□□□□ -1.6
VPS13D-214ENST00000620676 ERO1BQ86YB8 467 aa5.07□□□□□ -1.6
VPS13D-214ENST00000620676 EID3Q8N140 333 aa5.07□□□□□ -1.6
VPS13D-214ENST00000620676 SVOPQ8N4V2 548 aa5.07□□□□□ -1.6
VPS13D-214ENST00000620676 AMER2Q8N7J2 671 aa5.07□□□□□ -1.6
VPS13D-214ENST00000620676 OR5H6Q8NGV6 325 aa5.07□□□□□ -1.6
VPS13D-214ENST00000620676 LILRB4Q8NHJ6 448 aa5.07□□□□□ -1.6
VPS13D-214ENST00000620676 BLOC1S5Q8TDH9 187 aa5.07□□□□□ -1.6
VPS13D-214ENST00000620676 PRICKLE1Q96MT3 831 aaPredicted RBP5.07□□□□□ -1.6
VPS13D-214ENST00000620676 LGMNQ99538 433 aa5.07□□□□□ -1.6
VPS13D-214ENST00000620676 TIGARQ9NQ88 270 aa5.07□□□□□ -1.6
VPS13D-214ENST00000620676 PSME2Q9UL46 239 aa5.07□□□□□ -1.6
VPS13D-214ENST00000620676 CHRNB2P17787 502 aa5.07□□□□□ -1.6
VPS13D-214ENST00000620676 CHRM3P20309 590 aa5.07□□□□□ -1.6
VPS13D-214ENST00000620676 DBPQ10586 325 aaPredicted RBP5.07□□□□□ -1.6
VPS13D-214ENST00000620676 LCN1P1Q5VSP4 162 aa5.07□□□□□ -1.6
VPS13D-214ENST00000620676 OLFML2AQ68BL7 652 aa5.07□□□□□ -1.6
VPS13D-214ENST00000620676 ZNF470Q6ECI4 717 aa5.07□□□□□ -1.6
VPS13D-214ENST00000620676 LRRC55Q6ZSA7 311 aa5.07□□□□□ -1.6
VPS13D-214ENST00000620676 RFPL4BQ6ZWI9 263 aa5.07□□□□□ -1.6
VPS13D-214ENST00000620676 MINDY2Q8NBR6 621 aa5.07□□□□□ -1.6
VPS13D-214ENST00000620676 PIWIL2Q8TC59 973 aaKnown RBP5.07□□□□□ -1.6
VPS13D-214ENST00000620676 NYXQ9GZU5 481 aa5.07□□□□□ -1.6
VPS13D-214ENST00000620676 PDP1Q9P0J1 537 aaPredicted RBP5.07□□□□□ -1.6
VPS13D-214ENST00000620676 DNAJC5BQ9UF47 199 aa5.07□□□□□ -1.6
VPS13D-214ENST00000620676 ADGRE2Q9UHX3 823 aa5.07□□□□□ -1.6
VPS13D-214ENST00000620676 POLHQ9Y253 713 aa5.07□□□□□ -1.6
VPS13D-214ENST00000620676 PCDHB2Q9Y5E7 798 aa5.07□□□□□ -1.6
VPS13D-214ENST00000620676 SF3B1O75533 1304 aaKnown RBP eCLIP5.07□□□□□ -1.62e-6■■■■■ 111.8
VPS13D-214ENST00000620676 SKIV2LQ15477 1246 aaKnown RBP5.07□□□□□ -1.6
VPS13D-214ENST00000620676 CPNE2Q96FN4 548 aaPredicted RBP5.07□□□□□ -1.6
VPS13D-214ENST00000620676 ZFP3Q96NJ6 502 aa5.07□□□□□ -1.6
VPS13D-214ENST00000620676 LRRC19Q9H756 370 aa5.07□□□□□ -1.6
VPS13D-214ENST00000620676 ACOT9Q9Y305 439 aa5.07□□□□□ -1.6
VPS13D-214ENST00000620676 ANKRD34BA5PLL1 514 aa5.06□□□□□ -1.6
VPS13D-214ENST00000620676 TRIM3O75382 744 aaPredicted RBP5.06□□□□□ -1.6
VPS13D-214ENST00000620676 NDUFS3O75489 264 aa5.06□□□□□ -1.6
VPS13D-214ENST00000620676 MAGEA2P43356 314 aa5.06□□□□□ -1.6
VPS13D-214ENST00000620676 MYL6P60660 151 aa5.06□□□□□ -1.6
VPS13D-214ENST00000620676 SQLEQ14534 574 aa5.06□□□□□ -1.6
VPS13D-214ENST00000620676 DCAF4L1Q3SXM0 396 aa5.06□□□□□ -1.6
VPS13D-214ENST00000620676 GPR65Q8IYL9 337 aa5.06□□□□□ -1.6
VPS13D-214ENST00000620676 WDR36Q8NI36 951 aaKnown RBP5.06□□□□□ -1.6
VPS13D-214ENST00000620676 WACQ9BTA9 647 aa5.06□□□□□ -1.6
VPS13D-214ENST00000620676 IL1RAPQ9NPH3 570 aa5.06□□□□□ -1.6
VPS13D-214ENST00000620676 C11orf16Q9NQ32 467 aa5.06□□□□□ -1.6
VPS13D-214ENST00000620676 VTI1BQ9UEU0 232 aa5.06□□□□□ -1.6
VPS13D-214ENST00000620676 NOX1Q9Y5S8 564 aa5.06□□□□□ -1.6
VPS13D-214ENST00000620676 TNFRSF10AO00220 468 aa5.06□□□□□ -1.6
VPS13D-214ENST00000620676 ACLYP53396 1101 aa5.06□□□□□ -1.6
VPS13D-214ENST00000620676 DESI1Q6ICB0 168 aa5.06□□□□□ -1.6
VPS13D-214ENST00000620676 METTL25Q8N6Q8 603 aa5.06□□□□□ -1.6
VPS13D-214ENST00000620676 FNDC5Q8NAU1 212 aa5.06□□□□□ -1.6
VPS13D-214ENST00000620676 ASTN2O75129 1339 aaPredicted RBP5.06□□□□□ -1.6
VPS13D-214ENST00000620676 A0A088AWK7 358 aa5.06□□□□□ -1.6
VPS13D-214ENST00000620676 FADS2P1A8MWK0 482 aa5.06□□□□□ -1.6
VPS13D-214ENST00000620676 PRKCGP05129 697 aa5.06□□□□□ -1.6
VPS13D-214ENST00000620676 C4BPBP20851 252 aa5.06□□□□□ -1.6
VPS13D-214ENST00000620676 SSTR4P31391 388 aa5.06□□□□□ -1.6
VPS13D-214ENST00000620676 CDH8P55286 799 aa5.06□□□□□ -1.6
VPS13D-214ENST00000620676 RPL7AP62424 266 aaKnown RBP5.06□□□□□ -1.6
VPS13D-214ENST00000620676 SEMA5AQ13591 1074 aa5.06□□□□□ -1.6
VPS13D-214ENST00000620676 SNAPC1Q16533 368 aa5.06□□□□□ -1.6
VPS13D-214ENST00000620676 TATDN1Q6P1N9 297 aa5.06□□□□□ -1.6
VPS13D-214ENST00000620676 SLC22A8Q8TCC7 542 aa5.06□□□□□ -1.6
VPS13D-214ENST00000620676 EXOC2Q96KP1 924 aa5.06□□□□□ -1.6
VPS13D-214ENST00000620676 ERVK-18Q9QC07 812 aa5.06□□□□□ -1.6
VPS13D-214ENST00000620676 TMX2-CTNND1H3BSU7 103 aa5.06□□□□□ -1.6
VPS13D-214ENST00000620676 TXNL1O43396 289 aa5.06□□□□□ -1.6
VPS13D-214ENST00000620676 HMBSP08397 361 aa5.06□□□□□ -1.6
VPS13D-214ENST00000620676 THRBP10828 461 aa5.06□□□□□ -1.6
VPS13D-214ENST00000620676 TNNI3P19429 210 aa5.06□□□□□ -1.6
VPS13D-214ENST00000620676 SLC5A2P31639 672 aa5.06□□□□□ -1.6
VPS13D-214ENST00000620676 GABRB2P47870 512 aa5.06□□□□□ -1.6
VPS13D-214ENST00000620676 NDST2P52849 883 aa5.06□□□□□ -1.6
VPS13D-214ENST00000620676 SPIRE1Q08AE8 756 aa5.06□□□□□ -1.6
VPS13D-214ENST00000620676 UNC5AQ6ZN44 842 aa5.06□□□□□ -1.6
VPS13D-214ENST00000620676 R3HCC1LQ7Z5L2 792 aaKnown RBP5.06□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms