RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 GLUD2P49448 558 aa12.68□□□□□ -0.38
LIG1-221ENST00000613670 CXCR3P49682 368 aa12.68□□□□□ -0.38
LIG1-221ENST00000613670 GJA9P57773 515 aa12.68□□□□□ -0.38
LIG1-221ENST00000613670 DPYSQ14117 519 aa12.68□□□□□ -0.38
LIG1-221ENST00000613670 PERM1Q5SV97 790 aa12.68□□□□□ -0.38
LIG1-221ENST00000613670 DEFB132Q7Z7B7 95 aa12.68□□□□□ -0.38
LIG1-221ENST00000613670 SLC22A9Q8IVM8 553 aa12.68□□□□□ -0.38
LIG1-221ENST00000613670 LRRC52Q8N7C0 313 aa12.68□□□□□ -0.38
LIG1-221ENST00000613670 OR2T34Q8NGX1 318 aa12.68□□□□□ -0.38
LIG1-221ENST00000613670 OR2T3Q8NH03 318 aa12.68□□□□□ -0.38
LIG1-221ENST00000613670 SLC10A4Q96EP9 437 aa12.68□□□□□ -0.38
LIG1-221ENST00000613670 C1orf50Q9BV19 199 aa12.68□□□□□ -0.38
LIG1-221ENST00000613670 CD274Q9NZQ7 290 aa12.68□□□□□ -0.38
LIG1-221ENST00000613670 CNOT6Q9ULM6 557 aaKnown RBP12.68□□□□□ -0.38
LIG1-221ENST00000613670 SLC8A2Q9UPR5 921 aa12.68□□□□□ -0.38
LIG1-221ENST00000613670 SLC1A2P43004 574 aa12.68□□□□□ -0.38
LIG1-221ENST00000613670 AASDHQ4L235 1098 aaPredicted RBP12.68□□□□□ -0.38
LIG1-221ENST00000613670 KLHL23Q8NBE8 558 aa12.68□□□□□ -0.38
LIG1-221ENST00000613670 BPIFB6Q8NFQ5 453 aa12.68□□□□□ -0.38
LIG1-221ENST00000613670 ZC3H15Q8WU90 426 aaKnown RBP12.68□□□□□ -0.38
LIG1-221ENST00000613670 ASB9Q96DX5 294 aa12.68□□□□□ -0.38
LIG1-221ENST00000613670 KLHL5Q96PQ7 755 aa12.68□□□□□ -0.38
LIG1-221ENST00000613670 C17orf80Q9BSJ5 609 aa12.68□□□□□ -0.38
LIG1-221ENST00000613670 LMCD1Q9NZU5 365 aa12.68□□□□□ -0.38
LIG1-221ENST00000613670 SELENONQ9NZV5 590 aa12.68□□□□□ -0.38
LIG1-221ENST00000613670 RCOR3Q9P2K3 495 aaPredicted RBP12.68□□□□□ -0.38
LIG1-221ENST00000613670 ABCA3Q99758 1704 aa12.68□□□□□ -0.38
LIG1-221ENST00000613670 M0R3G1 203 aa12.68□□□□□ -0.38
LIG1-221ENST00000613670 DENRO43583 198 aaKnown RBP12.68□□□□□ -0.38
LIG1-221ENST00000613670 S100BP04271 92 aaPredicted RBP12.68□□□□□ -0.38
LIG1-221ENST00000613670 CD1EP15812 388 aa12.68□□□□□ -0.38
LIG1-221ENST00000613670 GHRHRQ02643 423 aa12.68□□□□□ -0.38
LIG1-221ENST00000613670 TUBB3Q13509 450 aa12.68□□□□□ -0.38
LIG1-221ENST00000613670 MAPK11Q15759 364 aa12.68□□□□□ -0.38
LIG1-221ENST00000613670 PIGGQ5H8A4 983 aa12.68□□□□□ -0.38
LIG1-221ENST00000613670 STEAP4Q687X5 459 aa12.68□□□□□ -0.38
LIG1-221ENST00000613670 POTEHQ6S545 545 aa12.68□□□□□ -0.38
LIG1-221ENST00000613670 TAS2R42Q7RTR8 314 aa12.68□□□□□ -0.38
LIG1-221ENST00000613670 LILRA2Q8N149 483 aa12.68□□□□□ -0.38
LIG1-221ENST00000613670 NAT16Q8N8M0 369 aa12.68□□□□□ -0.38
LIG1-221ENST00000613670 HDAC10Q969S8 669 aa12.68□□□□□ -0.38
LIG1-221ENST00000613670 ZNF512Q96ME7 567 aaPredicted RBP12.68□□□□□ -0.38
LIG1-221ENST00000613670 AP5M1Q9H0R1 490 aa12.68□□□□□ -0.38
LIG1-221ENST00000613670 ADAMTSL1Q8N6G6 1762 aa12.67□□□□□ -0.38
LIG1-221ENST00000613670 A0A1B0GTW7 788 aa12.67□□□□□ -0.38
LIG1-221ENST00000613670 FBXO21O94952 628 aa12.67□□□□□ -0.38
LIG1-221ENST00000613670 CES1P23141 567 aa12.67□□□□□ -0.38
LIG1-221ENST00000613670 LSM3P62310 102 aaKnown RBP12.67□□□□□ -0.38
LIG1-221ENST00000613670 TSPY1Q01534 308 aa12.67□□□□□ -0.38
LIG1-221ENST00000613670 RBM20Q5T481 1227 aaKnown RBP12.67□□□□□ -0.38
LIG1-221ENST00000613670 NSMCE2Q96MF7 247 aa12.67□□□□□ -0.38
LIG1-221ENST00000613670 HAPLN3Q96S86 360 aa12.67□□□□□ -0.38
LIG1-221ENST00000613670 ZBTB18Q99592 522 aa12.67□□□□□ -0.38
LIG1-221ENST00000613670 ADI1Q9BV57 179 aa12.67□□□□□ -0.38
LIG1-221ENST00000613670 SOX17Q9H6I2 414 aaPredicted RBP12.67□□□□□ -0.38
LIG1-221ENST00000613670 TSC22D4Q9Y3Q8 395 aa12.67□□□□□ -0.38
LIG1-221ENST00000613670 TIMM22Q9Y584 194 aa12.67□□□□□ -0.38
LIG1-221ENST00000613670 BTAF1O14981 1849 aa12.67□□□□□ -0.38
LIG1-221ENST00000613670 A0A087X1B8 175 aa12.67□□□□□ -0.38
LIG1-221ENST00000613670 H3BNX3 289 aa12.67□□□□□ -0.38
LIG1-221ENST00000613670 ALDH1A2O94788 518 aa12.67□□□□□ -0.38
LIG1-221ENST00000613670 MTHFD1P11586 935 aaKnown RBP12.67□□□□□ -0.38
LIG1-221ENST00000613670 PCSK1P29120 753 aa12.67□□□□□ -0.38
LIG1-221ENST00000613670 CD86P42081 329 aa12.67□□□□□ -0.38
LIG1-221ENST00000613670 MYBPC3Q14896 1274 aa12.67□□□□□ -0.38
LIG1-221ENST00000613670 TXNDC5Q8NBS9 432 aaKnown RBP12.67□□□□□ -0.38
LIG1-221ENST00000613670 ZNF555Q8NEP9 628 aa12.67□□□□□ -0.38
LIG1-221ENST00000613670 TEKT5Q96M29 485 aa12.67□□□□□ -0.38
LIG1-221ENST00000613670 SLC29A1Q99808 456 aa12.67□□□□□ -0.38
LIG1-221ENST00000613670 NRP1O14786 923 aa12.67□□□□□ -0.38
LIG1-221ENST00000613670 TBC1D4O60343 1298 aa12.67□□□□□ -0.38
LIG1-221ENST00000613670 CHRM3P20309 590 aa12.67□□□□□ -0.38
LIG1-221ENST00000613670 EIF2B2P49770 351 aaKnown RBP12.67□□□□□ -0.38
LIG1-221ENST00000613670 WNT3AP56704 352 aa12.67□□□□□ -0.38
LIG1-221ENST00000613670 RHDQ02161 417 aa12.67□□□□□ -0.38
LIG1-221ENST00000613670 CHRNB3Q05901 458 aa12.67□□□□□ -0.38
LIG1-221ENST00000613670 NR1D2Q14995 579 aa12.67□□□□□ -0.38
LIG1-221ENST00000613670 TIGD2Q4W5G0 525 aa12.67□□□□□ -0.38
LIG1-221ENST00000613670 ABRAXAS1Q6UWZ7 409 aa12.67□□□□□ -0.38
LIG1-221ENST00000613670 CROCCP3Q8IVE0 287 aa12.67□□□□□ -0.38
LIG1-221ENST00000613670 BBS5Q8N3I7 341 aa12.67□□□□□ -0.38
LIG1-221ENST00000613670 FIG4Q92562 907 aa12.67□□□□□ -0.38
LIG1-221ENST00000613670 PPP1R10Q96QC0 940 aaKnown RBP12.67□□□□□ -0.38
LIG1-221ENST00000613670 GAD1Q99259 594 aa12.67□□□□□ -0.38
LIG1-221ENST00000613670 EGFL8Q99944 293 aa12.67□□□□□ -0.38
LIG1-221ENST00000613670 OSBPL6Q9BZF3 934 aa12.67□□□□□ -0.38
LIG1-221ENST00000613670 RNF39Q9H2S5 420 aa12.67□□□□□ -0.38
LIG1-221ENST00000613670 MTMR10Q9NXD2 777 aa12.67□□□□□ -0.38
LIG1-221ENST00000613670 SFMBT1Q9UHJ3 866 aa12.67□□□□□ -0.38
LIG1-221ENST00000613670 ANAPC2Q9UJX6 822 aa12.67□□□□□ -0.38
LIG1-221ENST00000613670 A0A0J9YVX5 310 aa12.66□□□□□ -0.38
LIG1-221ENST00000613670 J3QRK9 145 aa12.66□□□□□ -0.38
LIG1-221ENST00000613670 MSI1O43347 362 aaKnown RBP12.66□□□□□ -0.38
LIG1-221ENST00000613670 GRID2O43424 1007 aa12.66□□□□□ -0.38
LIG1-221ENST00000613670 PCSK6P29122 969 aa12.66□□□□□ -0.38
LIG1-221ENST00000613670 TKTP29401 623 aaKnown RBP12.66□□□□□ -0.38
LIG1-221ENST00000613670 CYP4V2Q6ZWL3 525 aaPredicted RBP12.66□□□□□ -0.38
LIG1-221ENST00000613670 GRIN3AQ8TCU5 1115 aa12.66□□□□□ -0.38
LIG1-221ENST00000613670 FBXL8Q96CD0 374 aa12.66□□□□□ -0.38
LIG1-221ENST00000613670 CCDC97Q96F63 343 aaPredicted RBP12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms