RNA–Protein interactions for RNA: ENST00000601981.5

UPF1-213, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 556 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-213ENST00000601981 LONP2Q86WA8 852 aa10.2□□□□□ -0.78
UPF1-213ENST00000601981 RASSF3Q86WH2 238 aa10.2□□□□□ -0.78
UPF1-213ENST00000601981 TMPRSS6Q8IU80 811 aa10.2□□□□□ -0.78
UPF1-213ENST00000601981 PAF1Q8N7H5 531 aa10.2□□□□□ -0.78
UPF1-213ENST00000601981 MDGA1Q8NFP4 955 aa10.2□□□□□ -0.78
UPF1-213ENST00000601981 FRS2Q8WU20 508 aa10.2□□□□□ -0.78
UPF1-213ENST00000601981 HTR3CQ8WXA8 447 aa10.2□□□□□ -0.78
UPF1-213ENST00000601981 PTPRN2Q92932 1015 aa10.2□□□□□ -0.78
UPF1-213ENST00000601981 LRIG1Q96JA1 1093 aa10.2□□□□□ -0.78
UPF1-213ENST00000601981 TTC25Q96NG3 672 aa10.2□□□□□ -0.78
UPF1-213ENST00000601981 TSGA13Q96PP4 275 aa10.2□□□□□ -0.78
UPF1-213ENST00000601981 RBM15Q96T37 977 aaKnown RBP eCLIP10.2□□□□□ -0.78
UPF1-213ENST00000601981 HEPHQ9BQS7 1158 aa10.2□□□□□ -0.78
UPF1-213ENST00000601981 OSBPL1AQ9BXW6 950 aa10.2□□□□□ -0.78
UPF1-213ENST00000601981 TM6SF2Q9BZW4 377 aa10.2□□□□□ -0.78
UPF1-213ENST00000601981 RSPH9Q9H1X1 276 aaPredicted RBP10.2□□□□□ -0.78
UPF1-213ENST00000601981 TNKS2Q9H2K2 1166 aa10.2□□□□□ -0.78
UPF1-213ENST00000601981 SEMA4AQ9H3S1 761 aa10.2□□□□□ -0.78
UPF1-213ENST00000601981 PDFQ9HBH1 243 aa10.2□□□□□ -0.78
UPF1-213ENST00000601981 TMBIM4Q9HC24 238 aa10.2□□□□□ -0.78
UPF1-213ENST00000601981 DYRK4Q9NR20 520 aa10.2□□□□□ -0.78
UPF1-213ENST00000601981 ZSCAN32Q9NX65 697 aa10.2□□□□□ -0.78
UPF1-213ENST00000601981 NINJ2Q9NZG7 142 aa10.2□□□□□ -0.78
UPF1-213ENST00000601981 IL36AQ9UHA7 158 aa10.2□□□□□ -0.78
UPF1-213ENST00000601981 NCKAP1Q9Y2A7 1128 aa10.2□□□□□ -0.78
UPF1-213ENST00000601981 PCDHGA2Q9Y5H1 932 aa10.2□□□□□ -0.78
UPF1-213ENST00000601981 THADAQ6YHU6 1953 aa10.19□□□□□ -0.78
UPF1-213ENST00000601981 USP34Q70CQ2 3546 aa10.19□□□□□ -0.78
UPF1-213ENST00000601981 ANTXRLA6NF34 631 aa10.19□□□□□ -0.78
UPF1-213ENST00000601981 HMGB1P1B2RPK0 211 aaPredicted RBP10.19□□□□□ -0.78
UPF1-213ENST00000601981 E7ESA3 106 aa10.19□□□□□ -0.78
UPF1-213ENST00000601981 K7ERQ8 282 aa10.19□□□□□ -0.78
UPF1-213ENST00000601981 SMAD6O43541 496 aaKnown RBP10.19□□□□□ -0.78
UPF1-213ENST00000601981 OPHN1O60890 802 aa10.19□□□□□ -0.78
UPF1-213ENST00000601981 TMEM63AO94886 807 aa10.19□□□□□ -0.78
UPF1-213ENST00000601981 MAP3K6O95382 1288 aa10.19□□□□□ -0.78
UPF1-213ENST00000601981 POP4O95707 220 aaKnown RBP10.19□□□□□ -0.78
UPF1-213ENST00000601981 TTC4O95801 387 aa10.19□□□□□ -0.78
UPF1-213ENST00000601981 IL1BP01584 269 aa10.19□□□□□ -0.78
UPF1-213ENST00000601981 VAV1P15498 845 aa10.19□□□□□ -0.78
UPF1-213ENST00000601981 GABRG2P18507 467 aa10.19□□□□□ -0.78
UPF1-213ENST00000601981 NDUFV2P19404 249 aa10.19□□□□□ -0.78
UPF1-213ENST00000601981 CES1P23141 567 aa10.19□□□□□ -0.78
UPF1-213ENST00000601981 CNR2P34972 360 aa10.19□□□□□ -0.78
UPF1-213ENST00000601981 MAGEA4P43358 317 aa10.19□□□□□ -0.78
UPF1-213ENST00000601981 PSMD8P48556 350 aa10.19□□□□□ -0.78
UPF1-213ENST00000601981 CCNHP51946 323 aaPredicted RBP10.19□□□□□ -0.78
UPF1-213ENST00000601981 PTPN5P54829 565 aa10.19□□□□□ -0.78
UPF1-213ENST00000601981 BASP1P80723 227 aaKnown RBP10.19□□□□□ -0.78
UPF1-213ENST00000601981 NSUN2Q08J23 767 aaKnown RBP eCLIP10.19□□□□□ -0.78
UPF1-213ENST00000601981 IFFO1Q0D2I5 559 aa10.19□□□□□ -0.78
UPF1-213ENST00000601981 SLC29A2Q14542 456 aa10.19□□□□□ -0.78
UPF1-213ENST00000601981 CST6Q15828 149 aa10.19□□□□□ -0.78
UPF1-213ENST00000601981 HIF1AQ16665 826 aa10.19□□□□□ -0.78
UPF1-213ENST00000601981 TTMPQ5BVD1 217 aa10.19□□□□□ -0.78
UPF1-213ENST00000601981 RALGPS1Q5JS13 557 aa10.19□□□□□ -0.78
UPF1-213ENST00000601981 AGBL2Q5U5Z8 902 aa10.19□□□□□ -0.78
UPF1-213ENST00000601981 ANKRD22Q5VYY1 191 aa10.19□□□□□ -0.78
UPF1-213ENST00000601981 ARHGAP36Q6ZRI8 547 aa10.19□□□□□ -0.78
UPF1-213ENST00000601981 KBTBD6Q86V97 674 aa10.19□□□□□ -0.78
UPF1-213ENST00000601981 WDR5BQ86VZ2 330 aa10.19□□□□□ -0.78
UPF1-213ENST00000601981 STK40Q8N2I9 435 aa10.19□□□□□ -0.78
UPF1-213ENST00000601981 NETO2Q8NC67 525 aa10.19□□□□□ -0.78
UPF1-213ENST00000601981 TMIEQ8NEW7 156 aa10.19□□□□□ -0.78
UPF1-213ENST00000601981 GANCQ8TET4 914 aa10.19□□□□□ -0.78
UPF1-213ENST00000601981 MRGPRX1Q96LB2 322 aa10.19□□□□□ -0.78
UPF1-213ENST00000601981 SPATA13Q96N96 652 aa10.19□□□□□ -0.78
UPF1-213ENST00000601981 PSKH2Q96QS6 385 aa10.19□□□□□ -0.78
UPF1-213ENST00000601981 POLR1EQ9GZS1 481 aaKnown RBP10.19□□□□□ -0.78
UPF1-213ENST00000601981 ZDHHC6Q9H6R6 413 aa10.19□□□□□ -0.78
UPF1-213ENST00000601981 HECAQ9UBI9 543 aaPredicted RBP10.19□□□□□ -0.78
UPF1-213ENST00000601981 MUC6Q6W4X9 2439 aa10.19□□□□□ -0.78
UPF1-213ENST00000601981 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP10.18□□□□□ -0.78
UPF1-213ENST00000601981 GOLGA6CA6NDK9 693 aa10.18□□□□□ -0.78
UPF1-213ENST00000601981 POLR3GO15318 223 aaPredicted RBP10.18□□□□□ -0.78
UPF1-213ENST00000601981 CD160O95971 181 aa10.18□□□□□ -0.78
UPF1-213ENST00000601981 GOLGA6DP0CG33 693 aa10.18□□□□□ -0.78
UPF1-213ENST00000601981 SP9P0CG40 484 aa10.18□□□□□ -0.78
UPF1-213ENST00000601981 CCNB1P14635 433 aa10.18□□□□□ -0.78
UPF1-213ENST00000601981 TSHRP16473 764 aa10.18□□□□□ -0.78
UPF1-213ENST00000601981 TPSB2P20231 275 aa10.18□□□□□ -0.78
UPF1-213ENST00000601981 C5AR1P21730 350 aa10.18□□□□□ -0.78
UPF1-213ENST00000601981 CA4P22748 312 aa10.18□□□□□ -0.78
UPF1-213ENST00000601981 NFKBIAP25963 317 aa10.18□□□□□ -0.78
UPF1-213ENST00000601981 OXTRP30559 389 aa10.18□□□□□ -0.78
UPF1-213ENST00000601981 FDFT1P37268 417 aa10.18□□□□□ -0.78
UPF1-213ENST00000601981 CSNK1DP48730 415 aa10.18□□□□□ -0.78
UPF1-213ENST00000601981 FNTBP49356 437 aa10.18□□□□□ -0.78
UPF1-213ENST00000601981 COPAP53621 1224 aa10.18□□□□□ -0.78
UPF1-213ENST00000601981 AP1S1P61966 158 aa10.18□□□□□ -0.78
UPF1-213ENST00000601981 GABPB1Q06547 395 aaPredicted RBP10.18□□□□□ -0.78
UPF1-213ENST00000601981 ITKQ08881 620 aa10.18□□□□□ -0.78
UPF1-213ENST00000601981 SLC10A7Q0GE19 358 aa10.18□□□□□ -0.78
UPF1-213ENST00000601981 SEMA5AQ13591 1074 aa10.18□□□□□ -0.78
UPF1-213ENST00000601981 CYTH1Q15438 398 aa10.18□□□□□ -0.78
UPF1-213ENST00000601981 TPSAB1Q15661 275 aa10.18□□□□□ -0.78
UPF1-213ENST00000601981 KRT71Q3SY84 523 aa10.18□□□□□ -0.78
UPF1-213ENST00000601981 TSSK4Q6SA08 328 aa10.18□□□□□ -0.78
UPF1-213ENST00000601981 DPY19L3Q6ZPD9 716 aa10.18□□□□□ -0.78
UPF1-213ENST00000601981 ARHGEF18Q6ZSZ5 1173 aa10.18□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms