RNA–Protein interactions for RNA: ENST00000601150.5

TRIM28-215, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 915 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-215ENST00000601150 TFDP3Q5H9I0 405 aa17.01■□□□□ 0.31
TRIM28-215ENST00000601150 RALGPS1Q5JS13 557 aa17.01■□□□□ 0.31
TRIM28-215ENST00000601150 LRRC73Q5JTD7 316 aa17.01■□□□□ 0.31
TRIM28-215ENST00000601150 DGLUCYQ7Z3D6 616 aa17.01■□□□□ 0.31
TRIM28-215ENST00000601150 IQCHQ86VS3 1027 aa17.01■□□□□ 0.31
TRIM28-215ENST00000601150 EXD1Q8NHP7 514 aa17.01■□□□□ 0.31
TRIM28-215ENST00000601150 KRT35Q92764 455 aa17.01■□□□□ 0.31
TRIM28-215ENST00000601150 ECHDC3Q96DC8 303 aa17.01■□□□□ 0.31
TRIM28-215ENST00000601150 RBM41Q96IZ5 413 aaKnown RBP17.01■□□□□ 0.31
TRIM28-215ENST00000601150 SLC17A9Q9BYT1 436 aa17.01■□□□□ 0.31
TRIM28-215ENST00000601150 GAREM1Q9H706 876 aa17.01■□□□□ 0.31
TRIM28-215ENST00000601150 AMACRQ9UHK6 382 aa17.01■□□□□ 0.31
TRIM28-215ENST00000601150 GGT7Q9UJ14 662 aa17.01■□□□□ 0.31
TRIM28-215ENST00000601150 PCDHA3Q9Y5H8 950 aa17.01■□□□□ 0.31
TRIM28-215ENST00000601150 MACROD2A1Z1Q3 448 aa17■□□□□ 0.31
TRIM28-215ENST00000601150 GRID2IPA4D2P6 1211 aa17■□□□□ 0.31
TRIM28-215ENST00000601150 GOLGA6L3A6NEY3 463 aa17■□□□□ 0.31
TRIM28-215ENST00000601150 ARHGAP6O43182 974 aa17■□□□□ 0.31
TRIM28-215ENST00000601150 SOCS5O75159 536 aa17■□□□□ 0.31
TRIM28-215ENST00000601150 NEBLO76041 1014 aa17■□□□□ 0.31
TRIM28-215ENST00000601150 KRT10P13645 584 aa17■□□□□ 0.31
TRIM28-215ENST00000601150 CCNB1P14635 433 aa17■□□□□ 0.31
TRIM28-215ENST00000601150 CTNNA1P35221 906 aaKnown RBP17■□□□□ 0.31
TRIM28-215ENST00000601150 CTSKP43235 329 aa17■□□□□ 0.31
TRIM28-215ENST00000601150 MAXP61244 160 aa17■□□□□ 0.31
TRIM28-215ENST00000601150 PPIDQ08752 370 aaKnown RBP17■□□□□ 0.31
TRIM28-215ENST00000601150 OVGP1Q12889 678 aa17■□□□□ 0.31
TRIM28-215ENST00000601150 SGCGQ13326 291 aa17■□□□□ 0.31
TRIM28-215ENST00000601150 PDK1Q15118 436 aa17■□□□□ 0.31
TRIM28-215ENST00000601150 UGP2Q16851 508 aa17■□□□□ 0.31
TRIM28-215ENST00000601150 ERAP2Q6P179 960 aa17■□□□□ 0.31
TRIM28-215ENST00000601150 NPNTQ6UXI9 565 aa17■□□□□ 0.31
TRIM28-215ENST00000601150 CCDC50Q8IVM0 306 aa17■□□□□ 0.31
TRIM28-215ENST00000601150 CCDC13Q8IYE1 715 aa17■□□□□ 0.31
TRIM28-215ENST00000601150 LRRC57Q8N9N7 239 aa17■□□□□ 0.31
TRIM28-215ENST00000601150 ASB12Q8WXK4 309 aa17■□□□□ 0.31
TRIM28-215ENST00000601150 NSMCE3Q96MG7 304 aa17■□□□□ 0.31
TRIM28-215ENST00000601150 LGMNQ99538 433 aa17■□□□□ 0.31
TRIM28-215ENST00000601150 MYOCQ99972 504 aa17■□□□□ 0.31
TRIM28-215ENST00000601150 C1QTNF2Q9BXJ5 285 aa17■□□□□ 0.31
TRIM28-215ENST00000601150 NOD2Q9HC29 1040 aa17■□□□□ 0.31
TRIM28-215ENST00000601150 PCDH12Q9NPG4 1184 aa17■□□□□ 0.31
TRIM28-215ENST00000601150 RBM22Q9NW64 420 aaKnown RBP eCLIP17■□□□□ 0.31
TRIM28-215ENST00000601150 TRIM10Q9UDY6 481 aa17■□□□□ 0.31
TRIM28-215ENST00000601150 ADGRG1Q9Y653 693 aa17■□□□□ 0.31
TRIM28-215ENST00000601150 A0A0U1RQJ8 604 aa16.99■□□□□ 0.31
TRIM28-215ENST00000601150 A0A1W2PQ67 120 aa16.99■□□□□ 0.31
TRIM28-215ENST00000601150 TTC24A2A3L6 582 aaPredicted RBP16.99■□□□□ 0.31
TRIM28-215ENST00000601150 CCDC66A2RUB6 948 aa16.99■□□□□ 0.31
TRIM28-215ENST00000601150 IGLON5A6NGN9 336 aa16.99■□□□□ 0.31
TRIM28-215ENST00000601150 TLR4O00206 839 aa16.99■□□□□ 0.31
TRIM28-215ENST00000601150 TRAFD1O14545 582 aaPredicted RBP16.99■□□□□ 0.31
TRIM28-215ENST00000601150 PPP1R12AO14974 1030 aaPredicted RBP16.99■□□□□ 0.31
TRIM28-215ENST00000601150 CST8O60676 142 aa16.99■□□□□ 0.31
TRIM28-215ENST00000601150 MAGEC1O60732 1142 aa16.99■□□□□ 0.31
TRIM28-215ENST00000601150 ITIH2P19823 946 aa16.99■□□□□ 0.31
TRIM28-215ENST00000601150 CTNNA2P26232 953 aa16.99■□□□□ 0.31
TRIM28-215ENST00000601150 POLR2LP62875 67 aaKnown RBP16.99■□□□□ 0.31
TRIM28-215ENST00000601150 ITKQ08881 620 aa16.99■□□□□ 0.31
TRIM28-215ENST00000601150 SLC14A1Q13336 389 aa16.99■□□□□ 0.31
TRIM28-215ENST00000601150 FGL2Q14314 439 aa16.99■□□□□ 0.31
TRIM28-215ENST00000601150 TMEM52BQ4KMG9 183 aa16.99■□□□□ 0.31
TRIM28-215ENST00000601150 KAZNQ674X7 775 aa16.99■□□□□ 0.31
TRIM28-215ENST00000601150 BZW1Q7L1Q6 419 aaKnown RBP16.99■□□□□ 0.31
TRIM28-215ENST00000601150 ZSWIM9Q86XI8 627 aa16.99■□□□□ 0.31
TRIM28-215ENST00000601150 SYCE1Q8N0S2 351 aa16.99■□□□□ 0.31
TRIM28-215ENST00000601150 TMEM145Q8NBT3 493 aa16.99■□□□□ 0.31
TRIM28-215ENST00000601150 CXorf40AQ8TE69 158 aa16.99■□□□□ 0.31
TRIM28-215ENST00000601150 LRRN4Q8WUT4 740 aa16.99■□□□□ 0.31
TRIM28-215ENST00000601150 OLFM3Q96PB7 478 aa16.99■□□□□ 0.31
TRIM28-215ENST00000601150 SEMA3CQ99985 751 aa16.99■□□□□ 0.31
TRIM28-215ENST00000601150 POLR1EQ9GZS1 481 aaKnown RBP16.99■□□□□ 0.31
TRIM28-215ENST00000601150 BRD8Q9H0E9 1235 aa16.99■□□□□ 0.31
TRIM28-215ENST00000601150 IL21RQ9HBE5 538 aa16.99■□□□□ 0.31
TRIM28-215ENST00000601150 FZD3Q9NPG1 666 aa16.99■□□□□ 0.31
TRIM28-215ENST00000601150 ATP8A1Q9Y2Q0 1164 aa16.99■□□□□ 0.31
TRIM28-215ENST00000601150 hCG_1818297A0A087WSY0 165 aa16.98■□□□□ 0.31
TRIM28-215ENST00000601150 RIOK3O14730 519 aaKnown RBP16.98■□□□□ 0.31
TRIM28-215ENST00000601150 HTRA2O43464 458 aaPredicted RBP16.98■□□□□ 0.31
TRIM28-215ENST00000601150 DFNA5O60443 496 aa16.98■□□□□ 0.31
TRIM28-215ENST00000601150 MMP20O60882 483 aa16.98■□□□□ 0.31
TRIM28-215ENST00000601150 PAK4O96013 591 aaPredicted RBP16.98■□□□□ 0.31
TRIM28-215ENST00000601150 ZNF883P0CG24 379 aa16.98■□□□□ 0.31
TRIM28-215ENST00000601150 TGM2P21980 687 aa16.98■□□□□ 0.31
TRIM28-215ENST00000601150 CES1P23141 567 aa16.98■□□□□ 0.31
TRIM28-215ENST00000601150 NR2C2P49116 596 aa16.98■□□□□ 0.31
TRIM28-215ENST00000601150 NXPH1P58417 271 aa16.98■□□□□ 0.31
TRIM28-215ENST00000601150 COPS2P61201 443 aa16.98■□□□□ 0.31
TRIM28-215ENST00000601150 IFI35P80217 286 aaPredicted RBP16.98■□□□□ 0.31
TRIM28-215ENST00000601150 AP1B1Q10567 949 aa16.98■□□□□ 0.31
TRIM28-215ENST00000601150 LLGL1Q15334 1064 aa16.98■□□□□ 0.31
TRIM28-215ENST00000601150 PPP2R5EQ16537 467 aa16.98■□□□□ 0.31
TRIM28-215ENST00000601150 ZNF423Q2M1K9 1284 aa16.98■□□□□ 0.31
TRIM28-215ENST00000601150 ALG1LQ6GMV1 187 aa16.98■□□□□ 0.31
TRIM28-215ENST00000601150 NT5DC3Q86UY8 548 aa16.98■□□□□ 0.31
TRIM28-215ENST00000601150 LRRC8AQ8IWT6 810 aa16.98■□□□□ 0.31
TRIM28-215ENST00000601150 FAM174AQ8TBP5 190 aa16.98■□□□□ 0.31
TRIM28-215ENST00000601150 KLHDC7BQ96G42 594 aa16.98■□□□□ 0.31
TRIM28-215ENST00000601150 LENG8Q96PV6 779 aaPredicted RBP16.98■□□□□ 0.31
TRIM28-215ENST00000601150 WRAP53Q9BUR4 548 aaKnown RBP16.98■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms