RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 C18orf8Q96DM3 657 aa8.76□□□□□ -1.01
SHKBP1-220ENST00000599716 PGAP3Q96FM1 320 aaPredicted RBP8.76□□□□□ -1.01
SHKBP1-220ENST00000599716 LENG8Q96PV6 779 aaPredicted RBP8.76□□□□□ -1.01
SHKBP1-220ENST00000599716 EPAS1Q99814 870 aa8.76□□□□□ -1.01
SHKBP1-220ENST00000599716 DPH1Q9BZG8 443 aa8.76□□□□□ -1.01
SHKBP1-220ENST00000599716 CEP44Q9C0F1 390 aa8.76□□□□□ -1.01
SHKBP1-220ENST00000599716 SPASTQ9UBP0 616 aa8.76□□□□□ -1.01
SHKBP1-220ENST00000599716 RWDD2AQ9UIY3 292 aa8.76□□□□□ -1.01
SHKBP1-220ENST00000599716 SALL4Q9UJQ4 1053 aa8.76□□□□□ -1.01
SHKBP1-220ENST00000599716 TMEM59LQ9UK28 342 aa8.76□□□□□ -1.01
SHKBP1-220ENST00000599716 ATXN7L1Q9ULK2 861 aaPredicted RBP8.76□□□□□ -1.01
SHKBP1-220ENST00000599716 PADI4Q9UM07 663 aa8.76□□□□□ -1.01
SHKBP1-220ENST00000599716 NEU3Q9UQ49 428 aa8.76□□□□□ -1.01
SHKBP1-220ENST00000599716 OR1A2Q9Y585 309 aa8.76□□□□□ -1.01
SHKBP1-220ENST00000599716 SCN8AQ9UQD0 1980 aa8.75□□□□□ -1.01
SHKBP1-220ENST00000599716 CCDC187A0A096LP49 1063 aa8.75□□□□□ -1.01
SHKBP1-220ENST00000599716 A0A1W2PQM1 296 aa8.75□□□□□ -1.01
SHKBP1-220ENST00000599716 LMO7DNF2Z398 122 aa8.75□□□□□ -1.01
SHKBP1-220ENST00000599716 AREL1O15033 823 aa8.75□□□□□ -1.01
SHKBP1-220ENST00000599716 TSPAN6O43657 245 aa8.75□□□□□ -1.01
SHKBP1-220ENST00000599716 AP1G1O43747 822 aa8.75□□□□□ -1.01
SHKBP1-220ENST00000599716 NOBOXO60393 691 aa8.75□□□□□ -1.01
SHKBP1-220ENST00000599716 TMCC1O94876 653 aa8.75□□□□□ -1.01
SHKBP1-220ENST00000599716 F9P00740 461 aa8.75□□□□□ -1.01
SHKBP1-220ENST00000599716 RPLP0P05388 317 aaKnown RBP8.75□□□□□ -1.01
SHKBP1-220ENST00000599716 FAM87AP0C7U9 286 aa8.75□□□□□ -1.01
SHKBP1-220ENST00000599716 TIMP2P16035 220 aa8.75□□□□□ -1.01
SHKBP1-220ENST00000599716 SLC5A2P31639 672 aa8.75□□□□□ -1.01
SHKBP1-220ENST00000599716 UGT1A5P35504 534 aa8.75□□□□□ -1.01
SHKBP1-220ENST00000599716 ETV5P41161 510 aa8.75□□□□□ -1.01
SHKBP1-220ENST00000599716 GABRB2P47870 512 aa8.75□□□□□ -1.01
SHKBP1-220ENST00000599716 KLK7P49862 253 aa8.75□□□□□ -1.01
SHKBP1-220ENST00000599716 ALG11Q2TAA5 492 aa8.75□□□□□ -1.01
SHKBP1-220ENST00000599716 MYLK3Q32MK0 819 aa8.75□□□□□ -1.01
SHKBP1-220ENST00000599716 CCDC14Q49A88 953 aa8.75□□□□□ -1.01
SHKBP1-220ENST00000599716 FOXR2Q6PJQ5 311 aa8.75□□□□□ -1.01
SHKBP1-220ENST00000599716 ENPP7Q6UWV6 458 aa8.75□□□□□ -1.01
SHKBP1-220ENST00000599716 TMPRSS9Q7Z410 1059 aa8.75□□□□□ -1.01
SHKBP1-220ENST00000599716 BNIPLQ7Z465 357 aa8.75□□□□□ -1.01
SHKBP1-220ENST00000599716 NLRP14Q86W24 1093 aa8.75□□□□□ -1.01
SHKBP1-220ENST00000599716 TP53I13Q8NBR0 393 aaPredicted RBP8.75□□□□□ -1.01
SHKBP1-220ENST00000599716 OR2AP1Q8NGE2 309 aa8.75□□□□□ -1.01
SHKBP1-220ENST00000599716 WDR36Q8NI36 951 aaKnown RBP8.75□□□□□ -1.01
SHKBP1-220ENST00000599716 SLC30A5Q8TAD4 765 aa8.75□□□□□ -1.01
SHKBP1-220ENST00000599716 RXFP2Q8WXD0 754 aa8.75□□□□□ -1.01
SHKBP1-220ENST00000599716 JPH3Q8WXH2 748 aaPredicted RBP8.75□□□□□ -1.01
SHKBP1-220ENST00000599716 ARHGEF2Q92974 986 aaKnown RBP8.75□□□□□ -1.01
SHKBP1-220ENST00000599716 PDXPQ96GD0 296 aa8.75□□□□□ -1.01
SHKBP1-220ENST00000599716 C1orf74Q96LT6 269 aa8.75□□□□□ -1.01
SHKBP1-220ENST00000599716 CPEB1Q9BZB8 566 aaKnown RBP8.75□□□□□ -1.01
SHKBP1-220ENST00000599716 SLC13A1Q9BZW2 595 aa8.75□□□□□ -1.01
SHKBP1-220ENST00000599716 NOL6Q9H6R4 1146 aaKnown RBP8.75□□□□□ -1.01
SHKBP1-220ENST00000599716 SUDS3Q9H7L9 328 aaPredicted RBP8.75□□□□□ -1.01
SHKBP1-220ENST00000599716 USP29Q9HBJ7 922 aa8.75□□□□□ -1.01
SHKBP1-220ENST00000599716 EVA1BQ9NVM1 165 aa8.75□□□□□ -1.01
SHKBP1-220ENST00000599716 EIF2AK3Q9NZJ5 1116 aaKnown RBP8.75□□□□□ -1.01
SHKBP1-220ENST00000599716 PISDQ9UG56 409 aa8.75□□□□□ -1.01
SHKBP1-220ENST00000599716 OR12D3Q9UGF7 316 aa8.75□□□□□ -1.01
SHKBP1-220ENST00000599716 PCDHGA8Q9Y5G5 932 aa8.75□□□□□ -1.01
SHKBP1-220ENST00000599716 CSNK1G3Q9Y6M4 447 aa8.75□□□□□ -1.01
SHKBP1-220ENST00000599716 CCDC168Q8NDH2 2452 aa8.75□□□□□ -1.01
SHKBP1-220ENST00000599716 CACNA1DQ01668 2161 aa8.75□□□□□ -1.01
SHKBP1-220ENST00000599716 NBEAL1Q6ZS30 2694 aa8.74□□□□□ -1.01
SHKBP1-220ENST00000599716 PES1O00541 588 aaKnown RBP8.74□□□□□ -1.01
SHKBP1-220ENST00000599716 NTN3O00634 580 aaPredicted RBP8.74□□□□□ -1.01
SHKBP1-220ENST00000599716 TPP1O14773 563 aa8.74□□□□□ -1.01
SHKBP1-220ENST00000599716 PLD2O14939 933 aa8.74□□□□□ -1.01
SHKBP1-220ENST00000599716 SUV39H1O43463 412 aa8.74□□□□□ -1.01
SHKBP1-220ENST00000599716 BUB1O43683 1085 aa8.74□□□□□ -1.01
SHKBP1-220ENST00000599716 LZTS3O60299 673 aaPredicted RBP8.74□□□□□ -1.01
SHKBP1-220ENST00000599716 TM7SF2O76062 418 aa8.74□□□□□ -1.01
SHKBP1-220ENST00000599716 LRIG2O94898 1065 aa8.74□□□□□ -1.01
SHKBP1-220ENST00000599716 PCCBP05166 539 aa8.74□□□□□ -1.01
SHKBP1-220ENST00000599716 PRKCSHP14314 528 aaPredicted RBP8.74□□□□□ -1.01
SHKBP1-220ENST00000599716 CDH5P33151 784 aaPredicted RBP8.74□□□□□ -1.01
SHKBP1-220ENST00000599716 NOMO3P69849 1222 aa8.74□□□□□ -1.01
SHKBP1-220ENST00000599716 PPARDQ03181 441 aa8.74□□□□□ -1.01
SHKBP1-220ENST00000599716 SLC20A2Q08357 652 aa8.74□□□□□ -1.01
SHKBP1-220ENST00000599716 MTA1Q13330 715 aa8.74□□□□□ -1.01
SHKBP1-220ENST00000599716 WSCD2Q2TBF2 565 aa8.74□□□□□ -1.01
SHKBP1-220ENST00000599716 ARL13BQ3SXY8 428 aa8.74□□□□□ -1.01
SHKBP1-220ENST00000599716 MIIPQ5JXC2 388 aa8.74□□□□□ -1.01
SHKBP1-220ENST00000599716 MANEALQ5VSG8 457 aa8.74□□□□□ -1.01
SHKBP1-220ENST00000599716 IGF2-ASQ6U949 168 aa8.74□□□□□ -1.01
SHKBP1-220ENST00000599716 GDPD4Q6W3E5 623 aa8.74□□□□□ -1.01
SHKBP1-220ENST00000599716 MACC1Q6ZN28 852 aa8.74□□□□□ -1.01
SHKBP1-220ENST00000599716 RAB11FIP2Q7L804 512 aa8.74□□□□□ -1.01
SHKBP1-220ENST00000599716 CLEC14AQ86T13 490 aa8.74□□□□□ -1.01
SHKBP1-220ENST00000599716 ZFAND4Q86XD8 727 aa8.74□□□□□ -1.01
SHKBP1-220ENST00000599716 ZSWIM9Q86XI8 627 aa8.74□□□□□ -1.01
SHKBP1-220ENST00000599716 ZDHHC17Q8IUH5 632 aa8.74□□□□□ -1.01
SHKBP1-220ENST00000599716 ELOA2Q8IYF1 753 aaPredicted RBP8.74□□□□□ -1.01
SHKBP1-220ENST00000599716 FBXO39Q8N4B4 442 aa8.74□□□□□ -1.01
SHKBP1-220ENST00000599716 ARL14Q8N4G2 192 aa8.74□□□□□ -1.01
SHKBP1-220ENST00000599716 PLA2G15Q8NCC3 412 aa8.74□□□□□ -1.01
SHKBP1-220ENST00000599716 CXorf40AQ8TE69 158 aa8.74□□□□□ -1.01
SHKBP1-220ENST00000599716 HAPLN3Q96S86 360 aa8.74□□□□□ -1.01
SHKBP1-220ENST00000599716 CCNL2Q96S94 520 aaPredicted RBP8.74□□□□□ -1.01
SHKBP1-220ENST00000599716 C11orf70Q9BRQ4 267 aa8.74□□□□□ -1.01
SHKBP1-220ENST00000599716 MRPL40Q9NQ50 206 aaKnown RBP8.74□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms