RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 PCDH8O95206 1070 aa14.33□□□□□ -0.12
SHKBP1-217ENST00000598558 PRLP01236 227 aa14.33□□□□□ -0.12
SHKBP1-217ENST00000598558 PRLRP16471 622 aa14.33□□□□□ -0.12
SHKBP1-217ENST00000598558 CD27P26842 260 aa14.33□□□□□ -0.12
SHKBP1-217ENST00000598558 RBL1P28749 1068 aa14.33□□□□□ -0.12
SHKBP1-217ENST00000598558 SKOR1P84550 965 aa14.33□□□□□ -0.12
SHKBP1-217ENST00000598558 RPS6KA1Q15418 735 aa14.33□□□□□ -0.12
SHKBP1-217ENST00000598558 TEX44Q53QW1 395 aa14.33□□□□□ -0.12
SHKBP1-217ENST00000598558 TRIM61Q5EBN2 209 aa14.33□□□□□ -0.12
SHKBP1-217ENST00000598558 KDM7AQ6ZMT4 941 aa14.33□□□□□ -0.12
SHKBP1-217ENST00000598558 PRR23CQ6ZRP0 262 aa14.33□□□□□ -0.12
SHKBP1-217ENST00000598558 TRIM69Q86WT6 500 aa14.33□□□□□ -0.12
SHKBP1-217ENST00000598558 HORMAD1Q86X24 394 aa14.33□□□□□ -0.12
SHKBP1-217ENST00000598558 HCAR2Q8TDS4 363 aa14.33□□□□□ -0.12
SHKBP1-217ENST00000598558 TFB1MQ8WVM0 346 aaKnown RBP14.33□□□□□ -0.12
SHKBP1-217ENST00000598558 SLC6A18Q96N87 628 aa14.33□□□□□ -0.12
SHKBP1-217ENST00000598558 AGAP3Q96P47 875 aa14.33□□□□□ -0.12
SHKBP1-217ENST00000598558 QKIQ96PU8 341 aaKnown RBP eCLIP14.33□□□□□ -0.12
SHKBP1-217ENST00000598558 BRD8Q9H0E9 1235 aa14.33□□□□□ -0.12
SHKBP1-217ENST00000598558 EP300Q09472 2414 aaPredicted RBP14.33□□□□□ -0.12
SHKBP1-217ENST00000598558 WDR87Q6ZQQ6 2873 aa14.32□□□□□ -0.12
SHKBP1-217ENST00000598558 A0A1W2PR77 199 aa14.32□□□□□ -0.12
SHKBP1-217ENST00000598558 UPK3BL1B0FP48 263 aa14.32□□□□□ -0.12
SHKBP1-217ENST00000598558 UPK3BL2E5RIL1 263 aa14.32□□□□□ -0.12
SHKBP1-217ENST00000598558 RIOK3O14730 519 aaKnown RBP14.32□□□□□ -0.12
SHKBP1-217ENST00000598558 RAD51BO15315 384 aa14.32□□□□□ -0.12
SHKBP1-217ENST00000598558 SLC31A1O15431 190 aa14.32□□□□□ -0.12
SHKBP1-217ENST00000598558 SERPINA4P29622 427 aa14.32□□□□□ -0.12
SHKBP1-217ENST00000598558 CSNK1EP49674 416 aaKnown RBP14.32□□□□□ -0.12
SHKBP1-217ENST00000598558 GRM3Q14832 879 aa14.32□□□□□ -0.12
SHKBP1-217ENST00000598558 DUOXA1Q1HG43 343 aa14.32□□□□□ -0.12
SHKBP1-217ENST00000598558 TMEM52BQ4KMG9 183 aa14.32□□□□□ -0.12
SHKBP1-217ENST00000598558 SLC45A4Q5BKX6 768 aa14.32□□□□□ -0.12
SHKBP1-217ENST00000598558 NEK5Q6P3R8 708 aa14.32□□□□□ -0.12
SHKBP1-217ENST00000598558 SLC23A3Q6PIS1 610 aa14.32□□□□□ -0.12
SHKBP1-217ENST00000598558 BBS5Q8N3I7 341 aa14.32□□□□□ -0.12
SHKBP1-217ENST00000598558 TRIM58Q8NG06 486 aa14.32□□□□□ -0.12
SHKBP1-217ENST00000598558 OR2I1PQ8NGU4 316 aa14.32□□□□□ -0.12
SHKBP1-217ENST00000598558 SPATA22Q8NHS9 363 aa14.32□□□□□ -0.12
SHKBP1-217ENST00000598558 PIH1D2Q8WWB5 315 aa14.32□□□□□ -0.12
SHKBP1-217ENST00000598558 RAB7BQ96AH8 199 aa14.32□□□□□ -0.12
SHKBP1-217ENST00000598558 TADA1Q96BN2 335 aa14.32□□□□□ -0.12
SHKBP1-217ENST00000598558 TEKT5Q96M29 485 aa14.32□□□□□ -0.12
SHKBP1-217ENST00000598558 MYOCQ99972 504 aa14.32□□□□□ -0.12
SHKBP1-217ENST00000598558 C1QTNF2Q9BXJ5 285 aa14.32□□□□□ -0.12
SHKBP1-217ENST00000598558 POLR1EQ9GZS1 481 aaKnown RBP14.32□□□□□ -0.12
SHKBP1-217ENST00000598558 CAAP1Q9H8G2 361 aa14.32□□□□□ -0.12
SHKBP1-217ENST00000598558 USP29Q9HBJ7 922 aa14.32□□□□□ -0.12
SHKBP1-217ENST00000598558 FZD3Q9NPG1 666 aa14.32□□□□□ -0.12
SHKBP1-217ENST00000598558 AMACRQ9UHK6 382 aa14.32□□□□□ -0.12
SHKBP1-217ENST00000598558 TTLL3Q9Y4R7 772 aa14.32□□□□□ -0.12
SHKBP1-217ENST00000598558 PCDHB9Q9Y5E1 797 aa14.32□□□□□ -0.12
SHKBP1-217ENST00000598558 RAI2Q9Y5P3 530 aa14.32□□□□□ -0.12
SHKBP1-217ENST00000598558 THADAQ6YHU6 1953 aa14.32□□□□□ -0.12
SHKBP1-217ENST00000598558 A0A1B0GTW7 788 aa14.31□□□□□ -0.12
SHKBP1-217ENST00000598558 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP14.31□□□□□ -0.12
SHKBP1-217ENST00000598558 A0A1B0GVT2 93 aa14.31□□□□□ -0.12
SHKBP1-217ENST00000598558 LNP1A1A4G5 178 aa14.31□□□□□ -0.12
SHKBP1-217ENST00000598558 A8MX80 341 aa14.31□□□□□ -0.12
SHKBP1-217ENST00000598558 HACD1B0YJ81 288 aa14.31□□□□□ -0.12
SHKBP1-217ENST00000598558 H7C0C1 242 aa14.31□□□□□ -0.12
SHKBP1-217ENST00000598558 CDX4O14627 284 aaPredicted RBP14.31□□□□□ -0.12
SHKBP1-217ENST00000598558 KCNK3O14649 394 aa14.31□□□□□ -0.12
SHKBP1-217ENST00000598558 ENC1O14682 589 aa14.31□□□□□ -0.12
SHKBP1-217ENST00000598558 KHNYNO15037 678 aaKnown RBP14.31□□□□□ -0.12
SHKBP1-217ENST00000598558 BCAT2O15382 392 aaPredicted RBP14.31□□□□□ -0.12
SHKBP1-217ENST00000598558 TJP3O95049 919 aa14.31□□□□□ -0.12
SHKBP1-217ENST00000598558 PGLSO95336 258 aa14.31□□□□□ -0.12
SHKBP1-217ENST00000598558 PAK4O96013 591 aaPredicted RBP14.31□□□□□ -0.12
SHKBP1-217ENST00000598558 CFIP05156 583 aa14.31□□□□□ -0.12
SHKBP1-217ENST00000598558 SERPINF2P08697 491 aa14.31□□□□□ -0.12
SHKBP1-217ENST00000598558 RBP3P10745 1247 aa14.31□□□□□ -0.12
SHKBP1-217ENST00000598558 GM2AP17900 193 aa14.31□□□□□ -0.12
SHKBP1-217ENST00000598558 CXCR5P32302 372 aa14.31□□□□□ -0.12
SHKBP1-217ENST00000598558 HOXD12P35452 270 aa14.31□□□□□ -0.12
SHKBP1-217ENST00000598558 CD86P42081 329 aa14.31□□□□□ -0.12
SHKBP1-217ENST00000598558 MAPK8P45983 427 aa14.31□□□□□ -0.12
SHKBP1-217ENST00000598558 ATP5OP48047 213 aa14.31□□□□□ -0.12
SHKBP1-217ENST00000598558 EIF3EP60228 445 aaKnown RBP14.31□□□□□ -0.12
SHKBP1-217ENST00000598558 CCDC15Q0P6D6 951 aa14.31□□□□□ -0.12
SHKBP1-217ENST00000598558 CCDC173Q0VFZ6 552 aa14.31□□□□□ -0.12
SHKBP1-217ENST00000598558 RALGDSQ12967 914 aa14.31□□□□□ -0.12
SHKBP1-217ENST00000598558 XRCC4Q13426 336 aa14.31□□□□□ -0.12
SHKBP1-217ENST00000598558 SIX1Q15475 284 aaPredicted RBP14.31□□□□□ -0.12
SHKBP1-217ENST00000598558 RALGPS1Q5JS13 557 aa14.31□□□□□ -0.12
SHKBP1-217ENST00000598558 CCDC181Q5TID7 509 aa14.31□□□□□ -0.12
SHKBP1-217ENST00000598558 BRAT1Q6PJG6 821 aa14.31□□□□□ -0.12
SHKBP1-217ENST00000598558 BZW1Q7L1Q6 419 aaKnown RBP14.31□□□□□ -0.12
SHKBP1-217ENST00000598558 ADAT2Q7Z6V5 191 aaKnown RBP14.31□□□□□ -0.12
SHKBP1-217ENST00000598558 SLC13A5Q86YT5 568 aaPredicted RBP14.31□□□□□ -0.12
SHKBP1-217ENST00000598558 ZNF567Q8N184 647 aa14.31□□□□□ -0.12
SHKBP1-217ENST00000598558 SLC35F6Q8N357 371 aa14.31□□□□□ -0.12
SHKBP1-217ENST00000598558 PDCD6IPQ8WUM4 868 aaKnown RBP14.31□□□□□ -0.12
SHKBP1-217ENST00000598558 SPOCK2Q92563 424 aa14.31□□□□□ -0.12
SHKBP1-217ENST00000598558 IMP4Q96G21 291 aaKnown RBP14.31□□□□□ -0.12
SHKBP1-217ENST00000598558 FEM1CQ96JP0 617 aa14.31□□□□□ -0.12
SHKBP1-217ENST00000598558 RBM15Q96T37 977 aaKnown RBP eCLIP14.31□□□□□ -0.12
SHKBP1-217ENST00000598558 KLF6Q99612 283 aaPredicted RBP14.31□□□□□ -0.12
SHKBP1-217ENST00000598558 GORASP1Q9BQQ3 440 aa14.31□□□□□ -0.12
SHKBP1-217ENST00000598558 WRAP53Q9BUR4 548 aaKnown RBP14.31□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms