RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 CAMK1DQ8IU85 385 aa16.29■□□□□ 0.2
TRIM28-213ENST00000598355 ACRBPQ8NEB7 543 aa16.29■□□□□ 0.2
TRIM28-213ENST00000598355 BAHD1Q8TBE0 780 aaPredicted RBP16.29■□□□□ 0.2
TRIM28-213ENST00000598355 SKA1Q96BD8 255 aa16.29■□□□□ 0.2
TRIM28-213ENST00000598355 OLFM3Q96PB7 478 aa16.29■□□□□ 0.2
TRIM28-213ENST00000598355 LENG8Q96PV6 779 aaPredicted RBP16.29■□□□□ 0.2
TRIM28-213ENST00000598355 SLC17A9Q9BYT1 436 aa16.29■□□□□ 0.2
TRIM28-213ENST00000598355 LACRTQ9GZZ8 138 aa16.29■□□□□ 0.2
TRIM28-213ENST00000598355 AMACRQ9UHK6 382 aa16.29■□□□□ 0.2
TRIM28-213ENST00000598355 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP16.28■□□□□ 0.2
TRIM28-213ENST00000598355 TLR4O00206 839 aa16.28■□□□□ 0.2
TRIM28-213ENST00000598355 MATN3O15232 486 aa16.28■□□□□ 0.2
TRIM28-213ENST00000598355 SLC31A1O15431 190 aa16.28■□□□□ 0.2
TRIM28-213ENST00000598355 MAGEC1O60732 1142 aa16.28■□□□□ 0.2
TRIM28-213ENST00000598355 CBFA2T3O75081 653 aa16.28■□□□□ 0.2
TRIM28-213ENST00000598355 IPO7O95373 1038 aaKnown RBP16.28■□□□□ 0.2
TRIM28-213ENST00000598355 MX2P20592 715 aa16.28■□□□□ 0.2
TRIM28-213ENST00000598355 AKT2P31751 481 aa16.28■□□□□ 0.2
TRIM28-213ENST00000598355 CDKN2BP42772 138 aa16.28■□□□□ 0.2
TRIM28-213ENST00000598355 MMP13P45452 471 aa16.28■□□□□ 0.2
TRIM28-213ENST00000598355 NOP2P46087 812 aaKnown RBP16.28■□□□□ 0.2
TRIM28-213ENST00000598355 CCT8P50990 548 aa16.28■□□□□ 0.2
TRIM28-213ENST00000598355 NOVA1P51513 510 aaKnown RBP16.28■□□□□ 0.2
TRIM28-213ENST00000598355 C21orf59P57076 290 aa16.28■□□□□ 0.2
TRIM28-213ENST00000598355 PPIDQ08752 370 aaKnown RBP16.28■□□□□ 0.2
TRIM28-213ENST00000598355 ELP6Q0PNE2 266 aa16.28■□□□□ 0.2
TRIM28-213ENST00000598355 AGERQ15109 404 aa16.28■□□□□ 0.2
TRIM28-213ENST00000598355 SHBQ15464 509 aa16.28■□□□□ 0.2
TRIM28-213ENST00000598355 LRRC73Q5JTD7 316 aa16.28■□□□□ 0.2
TRIM28-213ENST00000598355 MARC1Q5VT66 337 aa16.28■□□□□ 0.2
TRIM28-213ENST00000598355 KYAT3Q6YP21 454 aaKnown RBP16.28■□□□□ 0.2
TRIM28-213ENST00000598355 TTC7BQ86TV6 843 aa16.28■□□□□ 0.2
TRIM28-213ENST00000598355 KATNAL2Q8IYT4 538 aa16.28■□□□□ 0.2
TRIM28-213ENST00000598355 FAM174AQ8TBP5 190 aa16.28■□□□□ 0.2
TRIM28-213ENST00000598355 ELF4Q99607 663 aaPredicted RBP16.28■□□□□ 0.2
TRIM28-213ENST00000598355 GDF3Q9NR23 364 aa16.28■□□□□ 0.2
TRIM28-213ENST00000598355 CA5BQ9Y2D0 317 aa16.28■□□□□ 0.2
TRIM28-213ENST00000598355 ATP8A1Q9Y2Q0 1164 aa16.28■□□□□ 0.2
TRIM28-213ENST00000598355 IGLON5A6NGN9 336 aa16.27■□□□□ 0.2
TRIM28-213ENST00000598355 RIOK3O14730 519 aaKnown RBP16.27■□□□□ 0.2
TRIM28-213ENST00000598355 RAD51BO15315 384 aa16.27■□□□□ 0.2
TRIM28-213ENST00000598355 YKT6O15498 198 aa16.27■□□□□ 0.2
TRIM28-213ENST00000598355 FLRT2O43155 660 aa16.27■□□□□ 0.2
TRIM28-213ENST00000598355 MAP3K6O95382 1288 aa16.27■□□□□ 0.2
TRIM28-213ENST00000598355 ADRB1P08588 477 aa16.27■□□□□ 0.2
TRIM28-213ENST00000598355 RXRGP48443 463 aa16.27■□□□□ 0.2
TRIM28-213ENST00000598355 MARCKSL1P49006 195 aa16.27■□□□□ 0.2
TRIM28-213ENST00000598355 SCNN1BP51168 640 aa16.27■□□□□ 0.2
TRIM28-213ENST00000598355 BCL2L1Q07817 233 aa16.27■□□□□ 0.2
TRIM28-213ENST00000598355 STAT4Q14765 748 aa16.27■□□□□ 0.2
TRIM28-213ENST00000598355 PSAPL1Q6NUJ1 521 aa16.27■□□□□ 0.2
TRIM28-213ENST00000598355 MFSD7Q6UXD7 560 aa16.27■□□□□ 0.2
TRIM28-213ENST00000598355 NAXDQ8IW45 347 aa16.27■□□□□ 0.2
TRIM28-213ENST00000598355 BBS5Q8N3I7 341 aa16.27■□□□□ 0.2
TRIM28-213ENST00000598355 OXR1Q8N573 874 aa16.27■□□□□ 0.2
TRIM28-213ENST00000598355 LRRC57Q8N9N7 239 aa16.27■□□□□ 0.2
TRIM28-213ENST00000598355 SPC24Q8NBT2 197 aa16.27■□□□□ 0.2
TRIM28-213ENST00000598355 DEFB124Q8NES8 71 aa16.27■□□□□ 0.2
TRIM28-213ENST00000598355 KLK6Q92876 244 aa16.27■□□□□ 0.2
TRIM28-213ENST00000598355 FZD3Q9NPG1 666 aa16.27■□□□□ 0.2
TRIM28-213ENST00000598355 PCDH12Q9NPG4 1184 aa16.27■□□□□ 0.2
TRIM28-213ENST00000598355 HS3ST3A1Q9Y663 406 aa16.27■□□□□ 0.2
TRIM28-213ENST00000598355 DUSP10Q9Y6W6 482 aa16.27■□□□□ 0.2
TRIM28-213ENST00000598355 A0A1W2PQ67 120 aa16.26■□□□□ 0.19
TRIM28-213ENST00000598355 CFAP69A5D8W1 941 aa16.26■□□□□ 0.19
TRIM28-213ENST00000598355 A6NNZ2 444 aa16.26■□□□□ 0.19
TRIM28-213ENST00000598355 APOL1O14791 398 aa16.26■□□□□ 0.19
TRIM28-213ENST00000598355 GIPC1O14908 333 aa16.26■□□□□ 0.19
TRIM28-213ENST00000598355 ZFXP17010 805 aaPredicted RBP16.26■□□□□ 0.19
TRIM28-213ENST00000598355 ITIH2P19823 946 aa16.26■□□□□ 0.19
TRIM28-213ENST00000598355 CTNNA1P35221 906 aaKnown RBP16.26■□□□□ 0.19
TRIM28-213ENST00000598355 RALGDSQ12967 914 aa16.26■□□□□ 0.19
TRIM28-213ENST00000598355 ZFYVE27Q5T4F4 411 aa16.26■□□□□ 0.19
TRIM28-213ENST00000598355 KANSL1Q7Z3B3 1105 aa16.26■□□□□ 0.19
TRIM28-213ENST00000598355 GLRX5Q86SX6 157 aa16.26■□□□□ 0.19
TRIM28-213ENST00000598355 SLC22A18ASQ8N1D0 253 aa16.26■□□□□ 0.19
TRIM28-213ENST00000598355 OR13H1Q8NG92 308 aa16.26■□□□□ 0.19
TRIM28-213ENST00000598355 NSMCE1Q8WV22 266 aa16.26■□□□□ 0.19
TRIM28-213ENST00000598355 KRT35Q92764 455 aa16.26■□□□□ 0.19
TRIM28-213ENST00000598355 CENPTQ96BT3 561 aa16.26■□□□□ 0.19
TRIM28-213ENST00000598355 BMFQ96LC9 184 aa16.26■□□□□ 0.19
TRIM28-213ENST00000598355 IL12RB2Q99665 862 aa16.26■□□□□ 0.19
TRIM28-213ENST00000598355 MYOCQ99972 504 aa16.26■□□□□ 0.19
TRIM28-213ENST00000598355 NOD2Q9HC29 1040 aa16.26■□□□□ 0.19
TRIM28-213ENST00000598355 PCOLCE2Q9UKZ9 415 aa16.26■□□□□ 0.19
TRIM28-213ENST00000598355 GOLGA4Q13439 2230 aaKnown RBP16.26■□□□□ 0.19
TRIM28-213ENST00000598355 hCG_1818297A0A087WSY0 165 aa16.25■□□□□ 0.19
TRIM28-213ENST00000598355 POM121BA6NF01 834 aa16.25■□□□□ 0.19
TRIM28-213ENST00000598355 NEMP1O14524 444 aa16.25■□□□□ 0.19
TRIM28-213ENST00000598355 SH3BP5O60239 455 aa16.25■□□□□ 0.19
TRIM28-213ENST00000598355 FZD6O60353 706 aa16.25■□□□□ 0.19
TRIM28-213ENST00000598355 PAK4O96013 591 aaPredicted RBP16.25■□□□□ 0.19
TRIM28-213ENST00000598355 THEGLP0DJG4 465 aa16.25■□□□□ 0.19
TRIM28-213ENST00000598355 CCNB1P14635 433 aa16.25■□□□□ 0.19
TRIM28-213ENST00000598355 EPHA8P29322 1005 aaPredicted RBP16.25■□□□□ 0.19
TRIM28-213ENST00000598355 IGFALSP35858 605 aa16.25■□□□□ 0.19
TRIM28-213ENST00000598355 GSDMDP57764 484 aa16.25■□□□□ 0.19
TRIM28-213ENST00000598355 PFN3P60673 137 aa16.25■□□□□ 0.19
TRIM28-213ENST00000598355 MAXP61244 160 aa16.25■□□□□ 0.19
TRIM28-213ENST00000598355 IFI35P80217 286 aaPredicted RBP16.25■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms