RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 DMC1Q14565 340 aa9.58□□□□□ -0.88
TRIM28-208ENST00000597172 CYTH1Q15438 398 aa9.58□□□□□ -0.88
TRIM28-208ENST00000597172 TRADDQ15628 312 aa9.58□□□□□ -0.88
TRIM28-208ENST00000597172 GLE1Q53GS7 698 aaKnown RBP9.58□□□□□ -0.88
TRIM28-208ENST00000597172 ANKRD20A2Q5SQ80 823 aa9.58□□□□□ -0.88
TRIM28-208ENST00000597172 ANKRD20A1Q5TYW2 823 aa9.58□□□□□ -0.88
TRIM28-208ENST00000597172 ANKRD20A3Q5VUR7 823 aa9.58□□□□□ -0.88
TRIM28-208ENST00000597172 LINGO4Q6UY18 593 aa9.58□□□□□ -0.88
TRIM28-208ENST00000597172 GSTA5Q7RTV2 222 aa9.58□□□□□ -0.88
TRIM28-208ENST00000597172 MAATS1Q7Z4T9 603 aa9.58□□□□□ -0.88
TRIM28-208ENST00000597172 ZNF354CQ86Y25 554 aa9.58□□□□□ -0.88
TRIM28-208ENST00000597172 MARCH9Q86YJ5 346 aa9.58□□□□□ -0.88
TRIM28-208ENST00000597172 ZNF567Q8N184 647 aa9.58□□□□□ -0.88
TRIM28-208ENST00000597172 PGBD5Q8N414 524 aa9.58□□□□□ -0.88
TRIM28-208ENST00000597172 PDCD7Q8N8D1 485 aaKnown RBP9.58□□□□□ -0.88
TRIM28-208ENST00000597172 ZNF513Q8N8E2 541 aaPredicted RBP9.58□□□□□ -0.88
TRIM28-208ENST00000597172 ZNF557Q8N988 423 aaPredicted RBP9.58□□□□□ -0.88
TRIM28-208ENST00000597172 CCDC110Q8TBZ0 833 aa9.58□□□□□ -0.88
TRIM28-208ENST00000597172 USP33Q8TEY7 942 aa9.58□□□□□ -0.88
TRIM28-208ENST00000597172 GRK7Q8WTQ7 553 aa9.58□□□□□ -0.88
TRIM28-208ENST00000597172 TEKT5Q96M29 485 aa9.58□□□□□ -0.88
TRIM28-208ENST00000597172 CCDC114Q96M63 670 aa9.58□□□□□ -0.88
TRIM28-208ENST00000597172 ZNF599Q96NL3 588 aa9.58□□□□□ -0.88
TRIM28-208ENST00000597172 TRIM51Q9BSJ1 452 aa9.58□□□□□ -0.88
TRIM28-208ENST00000597172 CEP41Q9BYV8 373 aa9.58□□□□□ -0.88
TRIM28-208ENST00000597172 SEPT10Q9P0V9 454 aa9.58□□□□□ -0.88
TRIM28-208ENST00000597172 DEC1Q9P2X7 70 aa9.58□□□□□ -0.88
TRIM28-208ENST00000597172 NOL12Q9UGY1 213 aaKnown RBP eCLIP9.58□□□□□ -0.88
TRIM28-208ENST00000597172 IL17BQ9UHF5 180 aa9.58□□□□□ -0.88
TRIM28-208ENST00000597172 HCN2Q9UL51 889 aa9.58□□□□□ -0.88
TRIM28-208ENST00000597172 V9GYY5 206 aaPredicted RBP9.58□□□□□ -0.88
TRIM28-208ENST00000597172 NYNRINQ9P2P1 1898 aaKnown RBP9.57□□□□□ -0.88
TRIM28-208ENST00000597172 ZSCAN5CA6NGD5 496 aaPredicted RBP9.57□□□□□ -0.88
TRIM28-208ENST00000597172 PRRT4C9JH25 899 aa9.57□□□□□ -0.88
TRIM28-208ENST00000597172 K7ERQ8 282 aa9.57□□□□□ -0.88
TRIM28-208ENST00000597172 ERVH48-1M5A8F1 160 aa9.57□□□□□ -0.88
TRIM28-208ENST00000597172 RNF103O00237 685 aa9.57□□□□□ -0.88
TRIM28-208ENST00000597172 MUSKO15146 869 aa9.57□□□□□ -0.88
TRIM28-208ENST00000597172 ZBTB24O43167 697 aaPredicted RBP9.57□□□□□ -0.88
TRIM28-208ENST00000597172 MTSS1O43312 755 aa9.57□□□□□ -0.88
TRIM28-208ENST00000597172 ZNF821O75541 412 aaPredicted RBP9.57□□□□□ -0.88
TRIM28-208ENST00000597172 METTL18O95568 372 aa9.57□□□□□ -0.88
TRIM28-208ENST00000597172 RHOXF2BP0C7M4 288 aa9.57□□□□□ -0.88
TRIM28-208ENST00000597172 C6P13671 934 aa9.57□□□□□ -0.88
TRIM28-208ENST00000597172 EIF2S3P41091 472 aaKnown RBP9.57□□□□□ -0.88
TRIM28-208ENST00000597172 RENBPP51606 427 aa9.57□□□□□ -0.88
TRIM28-208ENST00000597172 PTK6Q13882 451 aa9.57□□□□□ -0.88
TRIM28-208ENST00000597172 IHHQ14623 411 aa9.57□□□□□ -0.88
TRIM28-208ENST00000597172 ERCC6LQ2NKX8 1250 aa9.57□□□□□ -0.88
TRIM28-208ENST00000597172 TMEM196Q5HYL7 178 aa9.57□□□□□ -0.88
TRIM28-208ENST00000597172 TEX35Q5T0J7 233 aa9.57□□□□□ -0.88
TRIM28-208ENST00000597172 MARC1Q5VT66 337 aa9.57□□□□□ -0.88
TRIM28-208ENST00000597172 MBLAC2Q68D91 279 aa9.57□□□□□ -0.88
TRIM28-208ENST00000597172 DUPD1Q68J44 220 aa9.57□□□□□ -0.88
TRIM28-208ENST00000597172 GRAMD4Q6IC98 578 aa9.57□□□□□ -0.88
TRIM28-208ENST00000597172 FSTL4Q6MZW2 842 aa9.57□□□□□ -0.88
TRIM28-208ENST00000597172 TIGD7Q6NT04 549 aaPredicted RBP9.57□□□□□ -0.88
TRIM28-208ENST00000597172 C8orf74Q6P047 294 aa9.57□□□□□ -0.88
TRIM28-208ENST00000597172 SYDE1Q6ZW31 735 aaPredicted RBP9.57□□□□□ -0.88
TRIM28-208ENST00000597172 MINDY1Q8N5J2 469 aa9.57□□□□□ -0.88
TRIM28-208ENST00000597172 DCAF4L2Q8NA75 395 aa9.57□□□□□ -0.88
TRIM28-208ENST00000597172 SORCS1Q8WY21 1168 aa9.57□□□□□ -0.88
TRIM28-208ENST00000597172 SEC14L1Q92503 715 aa9.57□□□□□ -0.88
TRIM28-208ENST00000597172 ACDQ96AP0 544 aa9.57□□□□□ -0.88
TRIM28-208ENST00000597172 WBP1Q96G27 269 aa9.57□□□□□ -0.88
TRIM28-208ENST00000597172 MRGPRX3Q96LB0 322 aa9.57□□□□□ -0.88
TRIM28-208ENST00000597172 SPATA13Q96N96 652 aa9.57□□□□□ -0.88
TRIM28-208ENST00000597172 AGAP3Q96P47 875 aa9.57□□□□□ -0.88
TRIM28-208ENST00000597172 PNKPQ96T60 521 aa9.57□□□□□ -0.88
TRIM28-208ENST00000597172 GORASP1Q9BQQ3 440 aa9.57□□□□□ -0.88
TRIM28-208ENST00000597172 RHOXF2Q9BQY4 288 aa9.57□□□□□ -0.88
TRIM28-208ENST00000597172 ERP44Q9BS26 406 aa9.57□□□□□ -0.88
TRIM28-208ENST00000597172 C2orf49Q9BVC5 232 aaPredicted RBP9.57□□□□□ -0.88
TRIM28-208ENST00000597172 ANKZF1Q9H8Y5 726 aa9.57□□□□□ -0.88
TRIM28-208ENST00000597172 SP110Q9HB58 689 aa9.57□□□□□ -0.88
TRIM28-208ENST00000597172 FSCN3Q9NQT6 498 aa9.57□□□□□ -0.88
TRIM28-208ENST00000597172 RBM22Q9NW64 420 aaKnown RBP eCLIP9.57□□□□□ -0.88
TRIM28-208ENST00000597172 ANKMY1Q9P2S6 941 aa9.57□□□□□ -0.88
TRIM28-208ENST00000597172 UBA2Q9UBT2 640 aaPredicted RBP9.57□□□□□ -0.88
TRIM28-208ENST00000597172 HPCAL4Q9UM19 191 aa9.57□□□□□ -0.88
TRIM28-208ENST00000597172 SLC6A14Q9UN76 642 aa9.57□□□□□ -0.88
TRIM28-208ENST00000597172 ATP8A1Q9Y2Q0 1164 aa9.57□□□□□ -0.88
TRIM28-208ENST00000597172 FBN2P35556 2912 aa9.57□□□□□ -0.88
TRIM28-208ENST00000597172 CHD5Q8TDI0 1954 aa9.57□□□□□ -0.88
TRIM28-208ENST00000597172 CACNA1DQ01668 2161 aa9.57□□□□□ -0.88
TRIM28-208ENST00000597172 CXorf51AA0A1B0GTR3 108 aa9.56□□□□□ -0.88
TRIM28-208ENST00000597172 TTC24A2A3L6 582 aaPredicted RBP9.56□□□□□ -0.88
TRIM28-208ENST00000597172 TP73O15350 636 aa9.56□□□□□ -0.88
TRIM28-208ENST00000597172 RRP8O43159 456 aaKnown RBP9.56□□□□□ -0.88
TRIM28-208ENST00000597172 SMAD6O43541 496 aaKnown RBP9.56□□□□□ -0.88
TRIM28-208ENST00000597172 HEXIM1O94992 359 aaKnown RBP9.56□□□□□ -0.88
TRIM28-208ENST00000597172 GAS8O95995 478 aa9.56□□□□□ -0.88
TRIM28-208ENST00000597172 HLA-DQB2P05538 268 aa9.56□□□□□ -0.88
TRIM28-208ENST00000597172 POLR2EP19388 210 aaKnown RBP9.56□□□□□ -0.88
TRIM28-208ENST00000597172 EIF2DP41214 584 aaKnown RBP9.56□□□□□ -0.88
TRIM28-208ENST00000597172 GRIA2P42262 883 aa9.56□□□□□ -0.88
TRIM28-208ENST00000597172 DPP6P42658 865 aa9.56□□□□□ -0.88
TRIM28-208ENST00000597172 MMP13P45452 471 aa9.56□□□□□ -0.88
TRIM28-208ENST00000597172 RGRP47804 291 aa9.56□□□□□ -0.88
TRIM28-208ENST00000597172 STK19P49842 368 aaPredicted RBP9.56□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms