RNA–Protein interactions for RNA: ENST00000596549.5

LIG1-212, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-212ENST00000596549 RBFAQ8N0V3 343 aa13.18□□□□□ -0.3
LIG1-212ENST00000596549 ZNF548Q8NEK5 533 aaPredicted RBP13.18□□□□□ -0.3
LIG1-212ENST00000596549 CXorf40AQ8TE69 158 aa13.18□□□□□ -0.3
LIG1-212ENST00000596549 ECHDC3Q96DC8 303 aa13.18□□□□□ -0.3
LIG1-212ENST00000596549 IFT43Q96FT9 208 aa13.18□□□□□ -0.3
LIG1-212ENST00000596549 CSPG4P5Q96PW8 444 aa13.18□□□□□ -0.3
LIG1-212ENST00000596549 CINPQ9BW66 212 aaPredicted RBP13.18□□□□□ -0.3
LIG1-212ENST00000596549 PACSIN1Q9BY11 444 aa13.18□□□□□ -0.3
LIG1-212ENST00000596549 SUV39H2Q9H5I1 410 aa13.18□□□□□ -0.3
LIG1-212ENST00000596549 PCDH18Q9HCL0 1135 aa13.18□□□□□ -0.3
LIG1-212ENST00000596549 PCDH12Q9NPG4 1184 aa13.18□□□□□ -0.3
LIG1-212ENST00000596549 MBNL1Q9NR56 388 aaKnown RBP13.18□□□□□ -0.3
LIG1-212ENST00000596549 DNAJC28Q9NX36 388 aa13.18□□□□□ -0.3
LIG1-212ENST00000596549 DONSONQ9NYP3 566 aa13.18□□□□□ -0.3
LIG1-212ENST00000596549 LUC7L2Q9Y383 392 aaKnown RBP13.18□□□□□ -0.3
LIG1-212ENST00000596549 U3KQA8 63 aa13.18□□□□□ -0.3
LIG1-212ENST00000596549 DMXL2Q8TDJ6 3036 aa13.18□□□□□ -0.3
LIG1-212ENST00000596549 PALMO75781 387 aa13.17□□□□□ -0.3
LIG1-212ENST00000596549 NEBLO76041 1014 aa13.17□□□□□ -0.3
LIG1-212ENST00000596549 TM7SF2O76062 418 aa13.17□□□□□ -0.3
LIG1-212ENST00000596549 CSF2P04141 144 aa13.17□□□□□ -0.3
LIG1-212ENST00000596549 CD48P09326 243 aa13.17□□□□□ -0.3
LIG1-212ENST00000596549 C6P13671 934 aa13.17□□□□□ -0.3
LIG1-212ENST00000596549 CKMT2P17540 419 aa13.17□□□□□ -0.3
LIG1-212ENST00000596549 HNRNPH3P31942 346 aaKnown RBP13.17□□□□□ -0.3
LIG1-212ENST00000596549 CSNK1DP48730 415 aa13.17□□□□□ -0.3
LIG1-212ENST00000596549 SEMG2Q02383 582 aa13.17□□□□□ -0.3
LIG1-212ENST00000596549 SLC10A7Q0GE19 358 aa13.17□□□□□ -0.3
LIG1-212ENST00000596549 SGCGQ13326 291 aa13.17□□□□□ -0.3
LIG1-212ENST00000596549 UGP2Q16851 508 aa13.17□□□□□ -0.3
LIG1-212ENST00000596549 HES3Q5TGS1 186 aa13.17□□□□□ -0.3
LIG1-212ENST00000596549 NYAP1Q6ZVC0 841 aa13.17□□□□□ -0.3
LIG1-212ENST00000596549 DCP2Q8IU60 420 aaKnown RBP13.17□□□□□ -0.3
LIG1-212ENST00000596549 PGBD5Q8N414 524 aa13.17□□□□□ -0.3
LIG1-212ENST00000596549 TEKT4Q8WW24 435 aa13.17□□□□□ -0.3
LIG1-212ENST00000596549 TUBGCP5Q96RT8 1024 aa13.17□□□□□ -0.3
LIG1-212ENST00000596549 TCEAL2Q9H3H9 227 aaPredicted RBP13.17□□□□□ -0.3
LIG1-212ENST00000596549 IP6K2Q9UHH9 426 aa13.17□□□□□ -0.3
LIG1-212ENST00000596549 IPO11Q9UI26 975 aaKnown RBP13.17□□□□□ -0.3
LIG1-212ENST00000596549 CELSR3Q9NYQ7 3312 aa13.16□□□□□ -0.3
LIG1-212ENST00000596549 TRAFD1O14545 582 aaPredicted RBP13.16□□□□□ -0.3
LIG1-212ENST00000596549 RIOK3O14730 519 aaKnown RBP13.16□□□□□ -0.3
LIG1-212ENST00000596549 MFSD11O43934 449 aa13.16□□□□□ -0.3
LIG1-212ENST00000596549 MAFKO60675 156 aa13.16□□□□□ -0.3
LIG1-212ENST00000596549 MYF5P13349 255 aa13.16□□□□□ -0.3
LIG1-212ENST00000596549 CR2P20023 1033 aa13.16□□□□□ -0.3
LIG1-212ENST00000596549 EIF4A3P38919 411 aaKnown RBP13.16□□□□□ -0.3
LIG1-212ENST00000596549 ARL4AP40617 200 aa13.16□□□□□ -0.3
LIG1-212ENST00000596549 ARSEP51690 589 aa13.16□□□□□ -0.3
LIG1-212ENST00000596549 HNRNPKP61978 463 aaKnown RBP eCLIP13.16□□□□□ -0.3
LIG1-212ENST00000596549 ELP6Q0PNE2 266 aa13.16□□□□□ -0.3
LIG1-212ENST00000596549 ZNF211Q13398 564 aaPredicted RBP13.16□□□□□ -0.3
LIG1-212ENST00000596549 RFTN1Q14699 578 aaPredicted RBP13.16□□□□□ -0.3
LIG1-212ENST00000596549 LBRQ14739 615 aaKnown RBP13.16□□□□□ -0.3
LIG1-212ENST00000596549 GRM3Q14832 879 aa13.16□□□□□ -0.3
LIG1-212ENST00000596549 NFKBIBQ15653 356 aa13.16□□□□□ -0.3
LIG1-212ENST00000596549 ASTE1Q2TB18 679 aaPredicted RBP13.16□□□□□ -0.3
LIG1-212ENST00000596549 CCDC122Q5T0U0 273 aa13.16□□□□□ -0.3
LIG1-212ENST00000596549 TMCO4Q5TGY1 634 aa13.16□□□□□ -0.3
LIG1-212ENST00000596549 BRAT1Q6PJG6 821 aa13.16□□□□□ -0.3
LIG1-212ENST00000596549 TMCO3Q6UWJ1 677 aa13.16□□□□□ -0.3
LIG1-212ENST00000596549 SRLQ86TD4 932 aa13.16□□□□□ -0.3
LIG1-212ENST00000596549 TMPRSS12Q86WS5 348 aa13.16□□□□□ -0.3
LIG1-212ENST00000596549 LZTR1Q8N653 840 aa13.16□□□□□ -0.3
LIG1-212ENST00000596549 ZNF564Q8TBZ8 553 aaPredicted RBP13.16□□□□□ -0.3
LIG1-212ENST00000596549 FAM71BQ8TC56 605 aa13.16□□□□□ -0.3
LIG1-212ENST00000596549 HCAR2Q8TDS4 363 aa13.16□□□□□ -0.3
LIG1-212ENST00000596549 ZNF641Q96N77 438 aaPredicted RBP13.16□□□□□ -0.3
LIG1-212ENST00000596549 PSKH2Q96QS6 385 aa13.16□□□□□ -0.3
LIG1-212ENST00000596549 CCDC86Q9H6F5 360 aaKnown RBP13.16□□□□□ -0.3
LIG1-212ENST00000596549 NLGN3Q9NZ94 848 aa13.16□□□□□ -0.3
LIG1-212ENST00000596549 RALYQ9UKM9 306 aaKnown RBP13.16□□□□□ -0.3
LIG1-212ENST00000596549 ATP8A1Q9Y2Q0 1164 aa13.16□□□□□ -0.3
LIG1-212ENST00000596549 SCN8AQ9UQD0 1980 aa13.15□□□□□ -0.3
LIG1-212ENST00000596549 TTC24A2A3L6 582 aaPredicted RBP13.15□□□□□ -0.3
LIG1-212ENST00000596549 TRABD2BA6NFA1 517 aa13.15□□□□□ -0.3
LIG1-212ENST00000596549 K7ESM1 405 aa13.15□□□□□ -0.3
LIG1-212ENST00000596549 SCAMP1O15126 338 aa13.15□□□□□ -0.3
LIG1-212ENST00000596549 C1SP09871 688 aa13.15□□□□□ -0.3
LIG1-212ENST00000596549 GM2AP17900 193 aa13.15□□□□□ -0.3
LIG1-212ENST00000596549 IL4RP24394 825 aa13.15□□□□□ -0.3
LIG1-212ENST00000596549 SERPINA4P29622 427 aa13.15□□□□□ -0.3
LIG1-212ENST00000596549 SUOXP51687 545 aa13.15□□□□□ -0.3
LIG1-212ENST00000596549 INSM1Q01101 510 aaPredicted RBP13.15□□□□□ -0.3
LIG1-212ENST00000596549 MMRN1Q13201 1228 aa13.15□□□□□ -0.3
LIG1-212ENST00000596549 ILKQ13418 452 aa13.15□□□□□ -0.3
LIG1-212ENST00000596549 AGERQ15109 404 aa13.15□□□□□ -0.3
LIG1-212ENST00000596549 WSCD2Q2TBF2 565 aa13.15□□□□□ -0.3
LIG1-212ENST00000596549 BOLA3Q53S33 107 aa13.15□□□□□ -0.3
LIG1-212ENST00000596549 NCBP2-AS2Q69YL0 99 aa13.15□□□□□ -0.3
LIG1-212ENST00000596549 MACC1Q6ZN28 852 aa13.15□□□□□ -0.3
LIG1-212ENST00000596549 RFFLQ8WZ73 363 aa13.15□□□□□ -0.3
LIG1-212ENST00000596549 APOLD1Q96LR9 279 aa13.15□□□□□ -0.3
LIG1-212ENST00000596549 ZNF599Q96NL3 588 aa13.15□□□□□ -0.3
LIG1-212ENST00000596549 DNAJC7Q99615 494 aa13.15□□□□□ -0.3
LIG1-212ENST00000596549 MGME1Q9BQP7 344 aa13.15□□□□□ -0.3
LIG1-212ENST00000596549 LRRC61Q9BV99 259 aa13.15□□□□□ -0.3
LIG1-212ENST00000596549 ATP13A3Q9H7F0 1226 aa13.15□□□□□ -0.3
LIG1-212ENST00000596549 DKK4Q9UBT3 224 aa13.15□□□□□ -0.3
LIG1-212ENST00000596549 APOBEC3BQ9UH17 382 aaKnown RBP13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms