RNA–Protein interactions for RNA: ENST00000596104.5

LIG1-209, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 531 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-209ENST00000596104 PRICKLE2Q7Z3G6 844 aa10.08□□□□□ -0.8
LIG1-209ENST00000596104 HID1Q8IV36 788 aa10.08□□□□□ -0.8
LIG1-209ENST00000596104 EPS8L1Q8TE68 723 aa10.08□□□□□ -0.8
LIG1-209ENST00000596104 CXorf40AQ8TE69 158 aa10.08□□□□□ -0.8
LIG1-209ENST00000596104 RXFP2Q8WXD0 754 aa10.08□□□□□ -0.8
LIG1-209ENST00000596104 CPA5Q8WXQ8 436 aa10.08□□□□□ -0.8
LIG1-209ENST00000596104 TSACCQ96A04 125 aaPredicted RBP10.08□□□□□ -0.8
LIG1-209ENST00000596104 SGF29Q96ES7 293 aa10.08□□□□□ -0.8
LIG1-209ENST00000596104 GDAP1L1Q96MZ0 367 aa10.08□□□□□ -0.8
LIG1-209ENST00000596104 GFM1Q96RP9 751 aaKnown RBP10.08□□□□□ -0.8
LIG1-209ENST00000596104 WRAP53Q9BUR4 548 aaKnown RBP10.08□□□□□ -0.8
LIG1-209ENST00000596104 NAA15Q9BXJ9 866 aaKnown RBP10.08□□□□□ -0.8
LIG1-209ENST00000596104 CPEB1Q9BZB8 566 aaKnown RBP10.08□□□□□ -0.8
LIG1-209ENST00000596104 TTYH3Q9C0H2 523 aa10.08□□□□□ -0.8
LIG1-209ENST00000596104 KLC2Q9H0B6 622 aa10.08□□□□□ -0.8
LIG1-209ENST00000596104 NDST4Q9H3R1 872 aa10.08□□□□□ -0.8
LIG1-209ENST00000596104 NOL6Q9H6R4 1146 aaKnown RBP10.08□□□□□ -0.8
LIG1-209ENST00000596104 METTL5Q9NRN9 209 aaKnown RBP10.08□□□□□ -0.8
LIG1-209ENST00000596104 STARD5Q9NSY2 213 aa10.08□□□□□ -0.8
LIG1-209ENST00000596104 KIAA1468Q9P260 1216 aa10.08□□□□□ -0.8
LIG1-209ENST00000596104 HPCAL4Q9UM19 191 aa10.08□□□□□ -0.8
LIG1-209ENST00000596104 RP1P56715 2156 aa10.08□□□□□ -0.8
LIG1-209ENST00000596104 ZSCAN5CA6NGD5 496 aaPredicted RBP10.07□□□□□ -0.8
LIG1-209ENST00000596104 C2CD4BA6NLJ0 364 aa10.07□□□□□ -0.8
LIG1-209ENST00000596104 TMEM110-MUSTN1A8MSY1 372 aa10.07□□□□□ -0.8
LIG1-209ENST00000596104 TMX2-CTNND1H3BSU7 103 aa10.07□□□□□ -0.8
LIG1-209ENST00000596104 TERTO14746 1132 aaKnown RBP10.07□□□□□ -0.8
LIG1-209ENST00000596104 NVLO15381 856 aaKnown RBP10.07□□□□□ -0.8
LIG1-209ENST00000596104 GJB6O95452 261 aa10.07□□□□□ -0.8
LIG1-209ENST00000596104 ITGB2P05107 769 aa10.07□□□□□ -0.8
LIG1-209ENST00000596104 RPLP0P05388 317 aaKnown RBP10.07□□□□□ -0.8
LIG1-209ENST00000596104 LIPCP11150 499 aa10.07□□□□□ -0.8
LIG1-209ENST00000596104 SUOXP51687 545 aa10.07□□□□□ -0.8
LIG1-209ENST00000596104 HDAC4P56524 1084 aa10.07□□□□□ -0.8
LIG1-209ENST00000596104 ZFP36L1Q07352 338 aaKnown RBP10.07□□□□□ -0.8
LIG1-209ENST00000596104 NFATC4Q14934 902 aa10.07□□□□□ -0.8
LIG1-209ENST00000596104 LRRC14Q15048 493 aa10.07□□□□□ -0.8
LIG1-209ENST00000596104 TCEA2Q15560 299 aa10.07□□□□□ -0.8
LIG1-209ENST00000596104 CDO1Q16878 200 aa10.07□□□□□ -0.8
LIG1-209ENST00000596104 VWA3BQ502W6 1294 aa10.07□□□□□ -0.8
LIG1-209ENST00000596104 KLHDC7AQ5VTJ3 777 aa10.07□□□□□ -0.8
LIG1-209ENST00000596104 USP53Q70EK8 1073 aa10.07□□□□□ -0.8
LIG1-209ENST00000596104 JAMLQ86YT9 394 aa10.07□□□□□ -0.8
LIG1-209ENST00000596104 NETO2Q8NC67 525 aa10.07□□□□□ -0.8
LIG1-209ENST00000596104 MSANTD4Q8NCY6 345 aa10.07□□□□□ -0.8
LIG1-209ENST00000596104 GPR156Q8NFN8 814 aa10.07□□□□□ -0.8
LIG1-209ENST00000596104 JOSD2Q8TAC2 188 aa10.07□□□□□ -0.8
LIG1-209ENST00000596104 GPT2Q8TD30 523 aa10.07□□□□□ -0.8
LIG1-209ENST00000596104 SCG3Q8WXD2 468 aaKnown RBP10.07□□□□□ -0.8
LIG1-209ENST00000596104 CENPIQ92674 756 aaPredicted RBP10.07□□□□□ -0.8
LIG1-209ENST00000596104 EXTL1Q92935 676 aa10.07□□□□□ -0.8
LIG1-209ENST00000596104 TBC1D31Q96DN5 1066 aa10.07□□□□□ -0.8
LIG1-209ENST00000596104 TMEM74Q96NL1 305 aa10.07□□□□□ -0.8
LIG1-209ENST00000596104 TRIM4Q9C037 500 aa10.07□□□□□ -0.8
LIG1-209ENST00000596104 STRADBQ9C0K7 418 aa10.07□□□□□ -0.8
LIG1-209ENST00000596104 LRRN3Q9H3W5 708 aa10.07□□□□□ -0.8
LIG1-209ENST00000596104 LHX3Q9UBR4 397 aa10.07□□□□□ -0.8
LIG1-209ENST00000596104 PISDQ9UG56 409 aa10.07□□□□□ -0.8
LIG1-209ENST00000596104 IL17BQ9UHF5 180 aa10.07□□□□□ -0.8
LIG1-209ENST00000596104 GPR34Q9UPC5 381 aa10.07□□□□□ -0.8
LIG1-209ENST00000596104 DOLKQ9UPQ8 538 aa10.07□□□□□ -0.8
LIG1-209ENST00000596104 COQ6Q9Y2Z9 468 aa10.07□□□□□ -0.8
LIG1-209ENST00000596104 TSPAN11A1L157 253 aa10.06□□□□□ -0.8
LIG1-209ENST00000596104 F8VZ95 297 aa10.06□□□□□ -0.8
LIG1-209ENST00000596104 INSIG1O15503 277 aa10.06□□□□□ -0.8
LIG1-209ENST00000596104 BUB1O43683 1085 aa10.06□□□□□ -0.8
LIG1-209ENST00000596104 IGSF6O95976 241 aa10.06□□□□□ -0.8
LIG1-209ENST00000596104 CYP1A1P04798 512 aaPredicted RBP10.06□□□□□ -0.8
LIG1-209ENST00000596104 PLEKP08567 350 aaPredicted RBP10.06□□□□□ -0.8
LIG1-209ENST00000596104 CTSEP14091 401 aa10.06□□□□□ -0.8
LIG1-209ENST00000596104 UCHL3P15374 230 aa10.06□□□□□ -0.8
LIG1-209ENST00000596104 WT1P19544 449 aaPredicted RBP10.06□□□□□ -0.8
LIG1-209ENST00000596104 ITIH1P19827 911 aa10.06□□□□□ -0.8
LIG1-209ENST00000596104 MMP8P22894 467 aa10.06□□□□□ -0.8
LIG1-209ENST00000596104 HTR1BP28222 390 aa10.06□□□□□ -0.8
LIG1-209ENST00000596104 SDC4P31431 198 aa10.06□□□□□ -0.8
LIG1-209ENST00000596104 ETV5P41161 510 aa10.06□□□□□ -0.8
LIG1-209ENST00000596104 PTPN9P43378 593 aa10.06□□□□□ -0.8
LIG1-209ENST00000596104 SRP54P61011 504 aaKnown RBP10.06□□□□□ -0.8
LIG1-209ENST00000596104 NFKB2Q00653 900 aa10.06□□□□□ -0.8
LIG1-209ENST00000596104 RAD51Q06609 339 aa10.06□□□□□ -0.8
LIG1-209ENST00000596104 ELP6Q0PNE2 266 aa10.06□□□□□ -0.8
LIG1-209ENST00000596104 INPP5AQ14642 412 aa10.06□□□□□ -0.8
LIG1-209ENST00000596104 AGERQ15109 404 aa10.06□□□□□ -0.8
LIG1-209ENST00000596104 INO80DQ53TQ3 878 aaPredicted RBP10.06□□□□□ -0.8
LIG1-209ENST00000596104 OGFOD3Q6PK18 319 aa10.06□□□□□ -0.8
LIG1-209ENST00000596104 ENPP7Q6UWV6 458 aa10.06□□□□□ -0.8
LIG1-209ENST00000596104 STRADAQ7RTN6 431 aa10.06□□□□□ -0.8
LIG1-209ENST00000596104 GKN2Q86XP6 184 aa10.06□□□□□ -0.8
LIG1-209ENST00000596104 CCNJLQ8IV13 435 aa10.06□□□□□ -0.8
LIG1-209ENST00000596104 CCDC185Q8N715 623 aa10.06□□□□□ -0.8
LIG1-209ENST00000596104 RTL3Q8N8U3 475 aaKnown RBP10.06□□□□□ -0.8
LIG1-209ENST00000596104 OR6C4Q8NGE1 309 aa10.06□□□□□ -0.8
LIG1-209ENST00000596104 SLC20A1Q8WUM9 679 aa10.06□□□□□ -0.8
LIG1-209ENST00000596104 CASKIN2Q8WXE0 1202 aa10.06□□□□□ -0.8
LIG1-209ENST00000596104 NTAN1Q96AB6 310 aa10.06□□□□□ -0.8
LIG1-209ENST00000596104 PDXPQ96GD0 296 aa10.06□□□□□ -0.8
LIG1-209ENST00000596104 RBM15Q96T37 977 aaKnown RBP eCLIP10.06□□□□□ -0.8
LIG1-209ENST00000596104 APOOQ9BUR5 198 aa10.06□□□□□ -0.8
LIG1-209ENST00000596104 FAM117AQ9C073 453 aa10.06□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 167 ms