RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 MLXIPLQ9NP71 852 aa10.61□□□□□ -0.71
SS18-217ENST00000580958 INTS9Q9NV88 658 aaKnown RBP10.61□□□□□ -0.71
SS18-217ENST00000580958 DUS2Q9NX74 493 aaKnown RBP10.61□□□□□ -0.71
SS18-217ENST00000580958 NKIRAS1Q9NYS0 192 aa10.61□□□□□ -0.71
SS18-217ENST00000580958 MARK1Q9P0L2 795 aa10.61□□□□□ -0.71
SS18-217ENST00000580958 ZFATQ9P243 1243 aa10.61□□□□□ -0.71
SS18-217ENST00000580958 CHKBQ9Y259 395 aa10.61□□□□□ -0.71
SS18-217ENST00000580958 RAI2Q9Y5P3 530 aa10.61□□□□□ -0.71
SS18-217ENST00000580958 PSAT1Q9Y617 370 aa10.61□□□□□ -0.71
SS18-217ENST00000580958 ZNF106Q9H2Y7 1883 aaKnown RBP10.61□□□□□ -0.71
SS18-217ENST00000580958 TCF20Q9UGU0 1960 aaKnown RBP10.6□□□□□ -0.71
SS18-217ENST00000580958 HMX2A2RU54 273 aa10.6□□□□□ -0.71
SS18-217ENST00000580958 FAM47DPA6NHR8 397 aa10.6□□□□□ -0.71
SS18-217ENST00000580958 GOLGA8TH3BQL2 631 aa10.6□□□□□ -0.71
SS18-217ENST00000580958 PRKCGP05129 697 aa10.6□□□□□ -0.71
SS18-217ENST00000580958 PABPC1P11940 636 aaKnown RBP10.6□□□□□ -0.71
SS18-217ENST00000580958 KRT4P19013 534 aa10.6□□□□□ -0.71
SS18-217ENST00000580958 GP5P40197 560 aa10.6□□□□□ -0.71
SS18-217ENST00000580958 STK19P49842 368 aaPredicted RBP10.6□□□□□ -0.71
SS18-217ENST00000580958 NSUN2Q08J23 767 aaKnown RBP eCLIP10.6□□□□□ -0.71
SS18-217ENST00000580958 LRRC14Q15048 493 aa10.6□□□□□ -0.71
SS18-217ENST00000580958 GRTP1Q5TC63 336 aa10.6□□□□□ -0.71
SS18-217ENST00000580958 MROH9Q5TGP6 573 aa10.6□□□□□ -0.71
SS18-217ENST00000580958 DMRTA1Q5VZB9 504 aa10.6□□□□□ -0.71
SS18-217ENST00000580958 ARMC3Q5W041 872 aa10.6□□□□□ -0.71
SS18-217ENST00000580958 KIAA0930Q6ICG6 404 aaPredicted RBP10.6□□□□□ -0.71
SS18-217ENST00000580958 SYCE2Q6PIF2 218 aa10.6□□□□□ -0.71
SS18-217ENST00000580958 TMEM184AQ6ZMB5 413 aa10.6□□□□□ -0.71
SS18-217ENST00000580958 MICALCLQ6ZW33 695 aa10.6□□□□□ -0.71
SS18-217ENST00000580958 STRA8Q7Z7C7 330 aa10.6□□□□□ -0.71
SS18-217ENST00000580958 EFHBQ8N7U6 833 aa10.6□□□□□ -0.71
SS18-217ENST00000580958 NAT16Q8N8M0 369 aa10.6□□□□□ -0.71
SS18-217ENST00000580958 BLOC1S5Q8TDH9 187 aa10.6□□□□□ -0.71
SS18-217ENST00000580958 FGF13Q92913 245 aa10.6□□□□□ -0.71
SS18-217ENST00000580958 SMARCD2Q92925 531 aa10.6□□□□□ -0.71
SS18-217ENST00000580958 MTBPQ96DY7 904 aa10.6□□□□□ -0.71
SS18-217ENST00000580958 AGAP2Q99490 1192 aa10.6□□□□□ -0.71
SS18-217ENST00000580958 CPNE1Q99829 537 aa10.6□□□□□ -0.71
SS18-217ENST00000580958 TDRD1Q9BXT4 1180 aaKnown RBP10.6□□□□□ -0.71
SS18-217ENST00000580958 TM6SF2Q9BZW4 377 aa10.6□□□□□ -0.71
SS18-217ENST00000580958 SSU72Q9NP77 194 aaKnown RBP10.6□□□□□ -0.71
SS18-217ENST00000580958 TREX1Q9NSU2 369 aa10.6□□□□□ -0.71
SS18-217ENST00000580958 GGA2Q9UJY4 613 aa10.6□□□□□ -0.71
SS18-217ENST00000580958 SMG5Q9UPR3 1016 aaKnown RBP10.6□□□□□ -0.71
SS18-217ENST00000580958 KCTD3Q9Y597 815 aa10.6□□□□□ -0.71
SS18-217ENST00000580958 PCDHGC4Q9Y5F7 938 aa10.6□□□□□ -0.71
SS18-217ENST00000580958 LDB2O43679 373 aa10.59□□□□□ -0.71
SS18-217ENST00000580958 TYROBPO43914 113 aa10.59□□□□□ -0.71
SS18-217ENST00000580958 RFPL1O75677 317 aa10.59□□□□□ -0.71
SS18-217ENST00000580958 VAPBO95292 243 aa10.59□□□□□ -0.71
SS18-217ENST00000580958 PAPSS2O95340 614 aaPredicted RBP10.59□□□□□ -0.71
SS18-217ENST00000580958 PRLP01236 227 aa10.59□□□□□ -0.71
SS18-217ENST00000580958 CYP17A1P05093 508 aa10.59□□□□□ -0.71
SS18-217ENST00000580958 PIRTP0C851 137 aa10.59□□□□□ -0.71
SS18-217ENST00000580958 SRCP12931 536 aa10.59□□□□□ -0.71
SS18-217ENST00000580958 ALADP13716 330 aa10.59□□□□□ -0.71
SS18-217ENST00000580958 PAMP19021 973 aa10.59□□□□□ -0.71
SS18-217ENST00000580958 CA4P22748 312 aa10.59□□□□□ -0.71
SS18-217ENST00000580958 CNTFP26441 200 aa10.59□□□□□ -0.71
SS18-217ENST00000580958 ARNTP27540 789 aa10.59□□□□□ -0.71
SS18-217ENST00000580958 RPA3P35244 121 aaPredicted RBP10.59□□□□□ -0.71
SS18-217ENST00000580958 ABCG1P45844 678 aa10.59□□□□□ -0.71
SS18-217ENST00000580958 ARCN1P48444 511 aaKnown RBP10.59□□□□□ -0.71
SS18-217ENST00000580958 CSE1LP55060 971 aaKnown RBP10.59□□□□□ -0.71
SS18-217ENST00000580958 SLC18A2Q05940 514 aa10.59□□□□□ -0.71
SS18-217ENST00000580958 SLC20A2Q08357 652 aa10.59□□□□□ -0.71
SS18-217ENST00000580958 DHCR24Q15392 516 aa10.59□□□□□ -0.71
SS18-217ENST00000580958 CNGA3Q16281 694 aa10.59□□□□□ -0.71
SS18-217ENST00000580958 EML3Q32P44 896 aa10.59□□□□□ -0.71
SS18-217ENST00000580958 RALGPS1Q5JS13 557 aa10.59□□□□□ -0.71
SS18-217ENST00000580958 TRIM68Q6AZZ1 485 aa10.59□□□□□ -0.71
SS18-217ENST00000580958 SH2D5Q6ZV89 423 aa10.59□□□□□ -0.71
SS18-217ENST00000580958 NLRP9Q7RTR0 991 aa10.59□□□□□ -0.71
SS18-217ENST00000580958 ADGRG2Q8IZP9 1017 aa10.59□□□□□ -0.71
SS18-217ENST00000580958 ZNF557Q8N988 423 aaPredicted RBP10.59□□□□□ -0.71
SS18-217ENST00000580958 ZNF454Q8N9F8 522 aa10.59□□□□□ -0.71
SS18-217ENST00000580958 BANPQ8N9N5 519 aa10.59□□□□□ -0.71
SS18-217ENST00000580958 LPCAT1Q8NF37 534 aa10.59□□□□□ -0.71
SS18-217ENST00000580958 ST13P5Q8NFI4 369 aaPredicted RBP10.59□□□□□ -0.71
SS18-217ENST00000580958 GDAP1Q8TB36 358 aa10.59□□□□□ -0.71
SS18-217ENST00000580958 BPIFB1Q8TDL5 484 aa10.59□□□□□ -0.71
SS18-217ENST00000580958 DENND1AQ8TEH3 1009 aa10.59□□□□□ -0.71
SS18-217ENST00000580958 PDCD6IPQ8WUM4 868 aaKnown RBP10.59□□□□□ -0.71
SS18-217ENST00000580958 OSCP1Q8WVF1 389 aa10.59□□□□□ -0.71
SS18-217ENST00000580958 DYDC1Q8WWB3 177 aa10.59□□□□□ -0.71
SS18-217ENST00000580958 RMDN1Q96DB5 314 aa10.59□□□□□ -0.71
SS18-217ENST00000580958 ASIC4Q96FT7 647 aa10.59□□□□□ -0.71
SS18-217ENST00000580958 APOPT1Q96IL0 206 aa10.59□□□□□ -0.71
SS18-217ENST00000580958 RPL10LQ96L21 214 aaKnown RBP10.59□□□□□ -0.71
SS18-217ENST00000580958 ASB16Q96NS5 453 aa10.59□□□□□ -0.71
SS18-217ENST00000580958 SMIM14Q96QK8 99 aa10.59□□□□□ -0.71
SS18-217ENST00000580958 RBBP8Q99708 897 aa10.59□□□□□ -0.71
SS18-217ENST00000580958 RABEP2Q9H5N1 569 aa10.59□□□□□ -0.71
SS18-217ENST00000580958 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP10.59□□□□□ -0.71
SS18-217ENST00000580958 TXNDC16Q9P2K2 825 aa10.59□□□□□ -0.71
SS18-217ENST00000580958 EVLQ9UI08 416 aaPredicted RBP10.59□□□□□ -0.71
SS18-217ENST00000580958 GGT7Q9UJ14 662 aa10.59□□□□□ -0.71
SS18-217ENST00000580958 SLC25A13Q9UJS0 675 aa10.59□□□□□ -0.71
SS18-217ENST00000580958 ARIH1Q9Y4X5 557 aaPredicted RBP10.59□□□□□ -0.71
SS18-217ENST00000580958 SPO11Q9Y5K1 396 aa10.59□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms