RNA–Protein interactions for RNA: ENST00000577636.5

SS18-207, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-207ENST00000577636 RAB6BQ9NRW1 208 aa10.33□□□□□ -0.76
SS18-207ENST00000577636 SEPT10Q9P0V9 454 aa10.33□□□□□ -0.76
SS18-207ENST00000577636 EIF2B4Q9UI10 523 aaKnown RBP10.33□□□□□ -0.76
SS18-207ENST00000577636 DNMT3LQ9UJW3 386 aa10.33□□□□□ -0.76
SS18-207ENST00000577636 FNDC3AQ9Y2H6 1198 aaKnown RBP10.33□□□□□ -0.76
SS18-207ENST00000577636 HBS1LQ9Y450 684 aaKnown RBP10.33□□□□□ -0.76
SS18-207ENST00000577636 A0A1B0GVT2 93 aa10.32□□□□□ -0.76
SS18-207ENST00000577636 SLC12A8A0AV02 714 aa10.32□□□□□ -0.76
SS18-207ENST00000577636 GOLGA6CA6NDK9 693 aa10.32□□□□□ -0.76
SS18-207ENST00000577636 HMGB1P1B2RPK0 211 aaPredicted RBP10.32□□□□□ -0.76
SS18-207ENST00000577636 FAM72CH0Y354 149 aa10.32□□□□□ -0.76
SS18-207ENST00000577636 GFRA2O00451 464 aa10.32□□□□□ -0.76
SS18-207ENST00000577636 POLR3GO15318 223 aaPredicted RBP10.32□□□□□ -0.76
SS18-207ENST00000577636 MFSD11O43934 449 aa10.32□□□□□ -0.76
SS18-207ENST00000577636 CACNG3O60359 315 aa10.32□□□□□ -0.76
SS18-207ENST00000577636 SYNCRIPO60506 623 aaKnown RBP10.32□□□□□ -0.76
SS18-207ENST00000577636 HMBSP08397 361 aa10.32□□□□□ -0.76
SS18-207ENST00000577636 NUDT17P0C025 328 aa10.32□□□□□ -0.76
SS18-207ENST00000577636 CISD3P0C7P0 127 aa10.32□□□□□ -0.76
SS18-207ENST00000577636 GOLGA6DP0CG33 693 aa10.32□□□□□ -0.76
SS18-207ENST00000577636 FDFT1P37268 417 aa10.32□□□□□ -0.76
SS18-207ENST00000577636 SLC11A2P49281 568 aa10.32□□□□□ -0.76
SS18-207ENST00000577636 HARS2P49590 506 aaKnown RBP10.32□□□□□ -0.76
SS18-207ENST00000577636 CSNK1EP49674 416 aaKnown RBP10.32□□□□□ -0.76
SS18-207ENST00000577636 TUBP50607 506 aa10.32□□□□□ -0.76
SS18-207ENST00000577636 GDF10P55107 478 aa10.32□□□□□ -0.76
SS18-207ENST00000577636 NRG1Q02297 640 aaPredicted RBP10.32□□□□□ -0.76
SS18-207ENST00000577636 SLC29A2Q14542 456 aa10.32□□□□□ -0.76
SS18-207ENST00000577636 KRT71Q3SY84 523 aa10.32□□□□□ -0.76
SS18-207ENST00000577636 DNAJC21Q5F1R6 531 aaKnown RBP10.32□□□□□ -0.76
SS18-207ENST00000577636 FAM72AQ5TYM5 149 aa10.32□□□□□ -0.76
SS18-207ENST00000577636 SNX30Q5VWJ9 437 aa10.32□□□□□ -0.76
SS18-207ENST00000577636 ITPRIPL1Q6GPH6 555 aa10.32□□□□□ -0.76
SS18-207ENST00000577636 FAM72DQ6L9T8 149 aa10.32□□□□□ -0.76
SS18-207ENST00000577636 IL27RAQ6UWB1 636 aa10.32□□□□□ -0.76
SS18-207ENST00000577636 GLRX5Q86SX6 157 aa10.32□□□□□ -0.76
SS18-207ENST00000577636 PRUNE1Q86TP1 453 aa10.32□□□□□ -0.76
SS18-207ENST00000577636 FAM72BQ86X60 149 aa10.32□□□□□ -0.76
SS18-207ENST00000577636 RELL1Q8IUW5 271 aa10.32□□□□□ -0.76
SS18-207ENST00000577636 LRRC49Q8IUZ0 686 aa10.32□□□□□ -0.76
SS18-207ENST00000577636 DNASE2BQ8WZ79 361 aa10.32□□□□□ -0.76
SS18-207ENST00000577636 PRCCQ92733 491 aaPredicted RBP10.32□□□□□ -0.76
SS18-207ENST00000577636 SPATA13Q96N96 652 aa10.32□□□□□ -0.76
SS18-207ENST00000577636 OLFM3Q96PB7 478 aa10.32□□□□□ -0.76
SS18-207ENST00000577636 VAT1Q99536 393 aa10.32□□□□□ -0.76
SS18-207ENST00000577636 CDC6Q99741 560 aa10.32□□□□□ -0.76
SS18-207ENST00000577636 DDX50Q9BQ39 737 aaKnown RBP10.32□□□□□ -0.76
SS18-207ENST00000577636 TXLNGYQ9BZA5 131 aa10.32□□□□□ -0.76
SS18-207ENST00000577636 MKRN2Q9H000 416 aaKnown RBP10.32□□□□□ -0.76
SS18-207ENST00000577636 C10orf88Q9H8K7 445 aa10.32□□□□□ -0.76
SS18-207ENST00000577636 USP29Q9HBJ7 922 aa10.32□□□□□ -0.76
SS18-207ENST00000577636 SAYSD1Q9NPB0 183 aa10.32□□□□□ -0.76
SS18-207ENST00000577636 ITM2CQ9NQX7 267 aa10.32□□□□□ -0.76
SS18-207ENST00000577636 ETNK2Q9NVF9 386 aa10.32□□□□□ -0.76
SS18-207ENST00000577636 GOLGA6AQ9NYA3 693 aa10.32□□□□□ -0.76
SS18-207ENST00000577636 KIAA1522Q9P206 1035 aaPredicted RBP10.32□□□□□ -0.76
SS18-207ENST00000577636 VPS18Q9P253 973 aa10.32□□□□□ -0.76
SS18-207ENST00000577636 PCDH15Q96QU1 1955 aa10.32□□□□□ -0.76
SS18-207ENST00000577636 PLXNB3Q9ULL4 1909 aa10.31□□□□□ -0.76
SS18-207ENST00000577636 METTL12A8MUP2 240 aa10.31□□□□□ -0.76
SS18-207ENST00000577636 E9PAM4 449 aa10.31□□□□□ -0.76
SS18-207ENST00000577636 RNF103O00237 685 aa10.31□□□□□ -0.76
SS18-207ENST00000577636 RIPK2O43353 540 aa10.31□□□□□ -0.76
SS18-207ENST00000577636 GREM1O60565 184 aa10.31□□□□□ -0.76
SS18-207ENST00000577636 MAP3K6O95382 1288 aa10.31□□□□□ -0.76
SS18-207ENST00000577636 TTC4O95801 387 aa10.31□□□□□ -0.76
SS18-207ENST00000577636 ZDHHC11BP0C7U3 371 aa10.31□□□□□ -0.76
SS18-207ENST00000577636 ATP5DP30049 168 aa10.31□□□□□ -0.76
SS18-207ENST00000577636 IL12RB1P42701 662 aa10.31□□□□□ -0.76
SS18-207ENST00000577636 MAGEA4P43358 317 aa10.31□□□□□ -0.76
SS18-207ENST00000577636 TPMTP51580 245 aa10.31□□□□□ -0.76
SS18-207ENST00000577636 CDK16Q00536 496 aa10.31□□□□□ -0.76
SS18-207ENST00000577636 BNC1Q01954 994 aa10.31□□□□□ -0.76
SS18-207ENST00000577636 PDIA2Q13087 525 aaKnown RBP10.31□□□□□ -0.76
SS18-207ENST00000577636 EIF4EBP2Q13542 120 aaPredicted RBP10.31□□□□□ -0.76
SS18-207ENST00000577636 PRPSAP1Q14558 356 aa10.31□□□□□ -0.76
SS18-207ENST00000577636 SUZ12Q15022 739 aaKnown RBP10.31□□□□□ -0.76
SS18-207ENST00000577636 PRKD1Q15139 912 aaPredicted RBP10.31□□□□□ -0.76
SS18-207ENST00000577636 KCTD19Q17RG1 926 aaPredicted RBP10.31□□□□□ -0.76
SS18-207ENST00000577636 C6orf118Q5T5N4 469 aa10.31□□□□□ -0.76
SS18-207ENST00000577636 TIGD7Q6NT04 549 aaPredicted RBP10.31□□□□□ -0.76
SS18-207ENST00000577636 KLHDC10Q6PID8 442 aa10.31□□□□□ -0.76
SS18-207ENST00000577636 GALNT15Q8N3T1 639 aa10.31□□□□□ -0.76
SS18-207ENST00000577636 TAB3Q8N5C8 712 aaPredicted RBP10.31□□□□□ -0.76
SS18-207ENST00000577636 ARFGAP2Q8N6H7 521 aa10.31□□□□□ -0.76
SS18-207ENST00000577636 GLIS1Q8NBF1 620 aa10.31□□□□□ -0.76
SS18-207ENST00000577636 CADM4Q8NFZ8 388 aa10.31□□□□□ -0.76
SS18-207ENST00000577636 FAM76AQ8TAV0 307 aa10.31□□□□□ -0.76
SS18-207ENST00000577636 PIP4K2CQ8TBX8 421 aa10.31□□□□□ -0.76
SS18-207ENST00000577636 PYROXD1Q8WU10 500 aa10.31□□□□□ -0.76
SS18-207ENST00000577636 CPT1BQ92523 772 aa10.31□□□□□ -0.76
SS18-207ENST00000577636 PLD4Q96BZ4 506 aa10.31□□□□□ -0.76
SS18-207ENST00000577636 SLC39A13Q96H72 371 aa10.31□□□□□ -0.76
SS18-207ENST00000577636 ATP6V1G3Q96LB4 118 aa10.31□□□□□ -0.76
SS18-207ENST00000577636 PPP1R2P1Q96PQ5 205 aa10.31□□□□□ -0.76
SS18-207ENST00000577636 SH3GL2Q99962 352 aa10.31□□□□□ -0.76
SS18-207ENST00000577636 MAGEB5Q9BZ81 275 aa10.31□□□□□ -0.76
SS18-207ENST00000577636 ROPN1BQ9BZX4 212 aaPredicted RBP10.31□□□□□ -0.76
SS18-207ENST00000577636 ZYG11BQ9C0D3 744 aa10.31□□□□□ -0.76
SS18-207ENST00000577636 CDC42EP4Q9H3Q1 356 aaKnown RBP10.31□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms