RNA–Protein interactions for RNA: ENST00000577572.5

SS18-206, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 510 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-206ENST00000577572 ST13P5Q8NFI4 369 aaPredicted RBP15.4■□□□□ 0.06
SS18-206ENST00000577572 BRSK1Q8TDC3 778 aa15.4■□□□□ 0.06
SS18-206ENST00000577572 CYB5D2Q8WUJ1 264 aa15.4■□□□□ 0.06
SS18-206ENST00000577572 TMEM109Q9BVC6 243 aa15.4■□□□□ 0.06
SS18-206ENST00000577572 ROPN1BQ9BZX4 212 aaPredicted RBP15.4■□□□□ 0.06
SS18-206ENST00000577572 SUV39H2Q9H5I1 410 aa15.4■□□□□ 0.06
SS18-206ENST00000577572 ROPN1Q9HAT0 212 aaPredicted RBP15.4■□□□□ 0.06
SS18-206ENST00000577572 LRRC4CQ9HCJ2 640 aa15.4■□□□□ 0.06
SS18-206ENST00000577572 THEGQ9P2T0 379 aa15.4■□□□□ 0.06
SS18-206ENST00000577572 DKK3Q9UBP4 350 aa15.4■□□□□ 0.06
SS18-206ENST00000577572 EVLQ9UI08 416 aaPredicted RBP15.4■□□□□ 0.06
SS18-206ENST00000577572 PHTF1Q9UMS5 762 aa15.4■□□□□ 0.06
SS18-206ENST00000577572 SOX13Q9UN79 622 aa15.4■□□□□ 0.06
SS18-206ENST00000577572 DUSP12Q9UNI6 340 aa15.4■□□□□ 0.06
SS18-206ENST00000577572 PPIL1Q9Y3C6 166 aa15.4■□□□□ 0.06
SS18-206ENST00000577572 KIAA1549LQ6ZVL6 1849 aa15.4■□□□□ 0.06
SS18-206ENST00000577572 MYOFQ9NZM1 2061 aa15.39■□□□□ 0.05
SS18-206ENST00000577572 COL4A3Q01955 1670 aa15.39■□□□□ 0.05
SS18-206ENST00000577572 TSPAN11A1L157 253 aa15.39■□□□□ 0.05
SS18-206ENST00000577572 C19orf67A6NJJ6 358 aa15.39■□□□□ 0.05
SS18-206ENST00000577572 USP12O75317 370 aa15.39■□□□□ 0.05
SS18-206ENST00000577572 ALDH1A2O94788 518 aa15.39■□□□□ 0.05
SS18-206ENST00000577572 IVLP07476 585 aa15.39■□□□□ 0.05
SS18-206ENST00000577572 IL9P15248 144 aa15.39■□□□□ 0.05
SS18-206ENST00000577572 PSMA3P25788 255 aa15.39■□□□□ 0.05
SS18-206ENST00000577572 MGAT1P26572 445 aa15.39■□□□□ 0.05
SS18-206ENST00000577572 STX2P32856 288 aa15.39■□□□□ 0.05
SS18-206ENST00000577572 MRPS21P82921 87 aaKnown RBP15.39■□□□□ 0.05
SS18-206ENST00000577572 PRKCQQ04759 706 aa15.39■□□□□ 0.05
SS18-206ENST00000577572 ZP2Q05996 745 aa15.39■□□□□ 0.05
SS18-206ENST00000577572 TRAF2Q12933 501 aa15.39■□□□□ 0.05
SS18-206ENST00000577572 MSLNQ13421 630 aaPredicted RBP15.39■□□□□ 0.05
SS18-206ENST00000577572 STAT4Q14765 748 aa15.39■□□□□ 0.05
SS18-206ENST00000577572 RASA2Q15283 850 aa15.39■□□□□ 0.05
SS18-206ENST00000577572 UAP1Q16222 522 aaPredicted RBP15.39■□□□□ 0.05
SS18-206ENST00000577572 SDE2Q6IQ49 451 aa15.39■□□□□ 0.05
SS18-206ENST00000577572 SERPINA13PQ6UXR4 307 aa15.39■□□□□ 0.05
SS18-206ENST00000577572 C3orf62Q6ZUJ4 267 aa15.39■□□□□ 0.05
SS18-206ENST00000577572 Q6ZVU0 165 aa15.39■□□□□ 0.05
SS18-206ENST00000577572 RYBPQ8N488 228 aaPredicted RBP15.39■□□□□ 0.05
SS18-206ENST00000577572 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP15.39■□□□□ 0.05
SS18-206ENST00000577572 TTC8Q8TAM2 541 aa15.39■□□□□ 0.05
SS18-206ENST00000577572 GSDMBQ8TAX9 411 aa15.39■□□□□ 0.05
SS18-206ENST00000577572 SORCS1Q8WY21 1168 aa15.39■□□□□ 0.05
SS18-206ENST00000577572 OR8D1Q8WZ84 308 aa15.39■□□□□ 0.05
SS18-206ENST00000577572 PTPRN2Q92932 1015 aa15.39■□□□□ 0.05
SS18-206ENST00000577572 C9orf72Q96LT7 481 aa15.39■□□□□ 0.05
SS18-206ENST00000577572 LYSMD1Q96S90 227 aa15.39■□□□□ 0.05
SS18-206ENST00000577572 TNKS2Q9H2K2 1166 aa15.39■□□□□ 0.05
SS18-206ENST00000577572 EPB41L4BQ9H329 900 aa15.39■□□□□ 0.05
SS18-206ENST00000577572 MAGEE1Q9HCI5 957 aa15.39■□□□□ 0.05
SS18-206ENST00000577572 SORCS3Q9UPU3 1222 aa15.39■□□□□ 0.05
SS18-206ENST00000577572 TCAF1Q9Y4C2 921 aa15.39■□□□□ 0.05
SS18-206ENST00000577572 PCDHGC4Q9Y5F7 938 aa15.39■□□□□ 0.05
SS18-206ENST00000577572 MAD1L1Q9Y6D9 718 aa15.39■□□□□ 0.05
SS18-206ENST00000577572 MYO18AQ92614 2054 aaKnown RBP15.39■□□□□ 0.05
SS18-206ENST00000577572 TTC34A8MYJ7 566 aa15.38■□□□□ 0.05
SS18-206ENST00000577572 K7EQS6 105 aa15.38■□□□□ 0.05
SS18-206ENST00000577572 CRTAMO95727 393 aa15.38■□□□□ 0.05
SS18-206ENST00000577572 C7P10643 843 aa15.38■□□□□ 0.05
SS18-206ENST00000577572 PAMP19021 973 aa15.38■□□□□ 0.05
SS18-206ENST00000577572 KIR2DL1P43626 348 aaPredicted RBP15.38■□□□□ 0.05
SS18-206ENST00000577572 NUMBP49757 651 aa15.38■□□□□ 0.05
SS18-206ENST00000577572 MESP2Q0VG99 397 aa15.38■□□□□ 0.05
SS18-206ENST00000577572 ILF2Q12905 390 aaKnown RBP15.38■□□□□ 0.05
SS18-206ENST00000577572 NAB1Q13506 487 aa15.38■□□□□ 0.05
SS18-206ENST00000577572 SLC29A2Q14542 456 aa15.38■□□□□ 0.05
SS18-206ENST00000577572 FASTKD3Q14CZ7 662 aaKnown RBP15.38■□□□□ 0.05
SS18-206ENST00000577572 KLHL38Q2WGJ6 581 aa15.38■□□□□ 0.05
SS18-206ENST00000577572 SLC44A4Q53GD3 710 aa15.38■□□□□ 0.05
SS18-206ENST00000577572 FAM182AQ5T1J6 154 aa15.38■□□□□ 0.05
SS18-206ENST00000577572 CASC4Q6P4E1 433 aa15.38■□□□□ 0.05
SS18-206ENST00000577572 GDPD4Q6W3E5 623 aa15.38■□□□□ 0.05
SS18-206ENST00000577572 RAVER1Q8IY67 606 aaKnown RBP15.38■□□□□ 0.05
SS18-206ENST00000577572 AGGF1Q8N302 714 aaeCLIP15.38■□□□□ 0.05
SS18-206ENST00000577572 SYNPOQ8N3V7 929 aa15.38■□□□□ 0.05
SS18-206ENST00000577572 GABPB2Q8TAK5 448 aaPredicted RBP15.38■□□□□ 0.05
SS18-206ENST00000577572 PIH1D2Q8WWB5 315 aa15.38■□□□□ 0.05
SS18-206ENST00000577572 ATXN2LQ8WWM7 1075 aaKnown RBP15.38■□□□□ 0.05
SS18-206ENST00000577572 RMDN1Q96DB5 314 aa15.38■□□□□ 0.05
SS18-206ENST00000577572 APOL2Q9BQE5 337 aa15.38■□□□□ 0.05
SS18-206ENST00000577572 WDR83Q9BRX9 315 aaKnown RBP15.38■□□□□ 0.05
SS18-206ENST00000577572 ZNF446Q9NWS9 450 aa15.38■□□□□ 0.05
SS18-206ENST00000577572 SYBUQ9NX95 663 aa15.38■□□□□ 0.05
SS18-206ENST00000577572 MOCS1Q9NZB8 636 aa15.38■□□□□ 0.05
SS18-206ENST00000577572 IL36AQ9UHA7 158 aa15.38■□□□□ 0.05
SS18-206ENST00000577572 CHMP2BQ9UQN3 213 aa15.38■□□□□ 0.05
SS18-206ENST00000577572 CHKBQ9Y259 395 aa15.38■□□□□ 0.05
SS18-206ENST00000577572 FAM169AQ9Y6X4 670 aa15.38■□□□□ 0.05
SS18-206ENST00000577572 REV3LO60673 3130 aa15.38■□□□□ 0.05
SS18-206ENST00000577572 TTC24A2A3L6 582 aaPredicted RBP15.37■□□□□ 0.05
SS18-206ENST00000577572 MROH6A6NGR9 719 aa15.37■□□□□ 0.05
SS18-206ENST00000577572 GJB3O75712 270 aa15.37■□□□□ 0.05
SS18-206ENST00000577572 ASGR2P07307 311 aa15.37■□□□□ 0.05
SS18-206ENST00000577572 PRKCHP24723 683 aa15.37■□□□□ 0.05
SS18-206ENST00000577572 CHRNA4P43681 627 aa15.37■□□□□ 0.05
SS18-206ENST00000577572 SOX9P48436 509 aa15.37■□□□□ 0.05
SS18-206ENST00000577572 EPHB1P54762 984 aa15.37■□□□□ 0.05
SS18-206ENST00000577572 GPS2Q13227 327 aa15.37■□□□□ 0.05
SS18-206ENST00000577572 TAF1AQ15573 450 aaPredicted RBP15.37■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms