RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 TADA1Q96BN2 335 aa10.16□□□□□ -0.78
VPS53-220ENST00000576149 PABPC5Q96DU9 382 aaKnown RBP10.16□□□□□ -0.78
VPS53-220ENST00000576149 PPP1R36Q96LQ0 422 aa10.16□□□□□ -0.78
VPS53-220ENST00000576149 FAM193BQ96PV7 902 aaPredicted RBP10.16□□□□□ -0.78
VPS53-220ENST00000576149 TTC1Q99614 292 aa10.16□□□□□ -0.78
VPS53-220ENST00000576149 CCDC28BQ9BUN5 200 aa10.16□□□□□ -0.78
VPS53-220ENST00000576149 ZNF385DQ9H6B1 395 aa10.16□□□□□ -0.78
VPS53-220ENST00000576149 SP110Q9HB58 689 aa10.16□□□□□ -0.78
VPS53-220ENST00000576149 MTPAPQ9NVV4 582 aaKnown RBP eCLIP10.16□□□□□ -0.78
VPS53-220ENST00000576149 FBXO9Q9UK97 447 aaPredicted RBP10.16□□□□□ -0.78
VPS53-220ENST00000576149 CORO1CQ9ULV4 474 aaPredicted RBP10.16□□□□□ -0.78
VPS53-220ENST00000576149 TLL2Q9Y6L7 1015 aa10.16□□□□□ -0.78
VPS53-220ENST00000576149 RGSL1A5PLK6 1076 aa10.16□□□□□ -0.78
VPS53-220ENST00000576149 DRGXA6NNA5 263 aa10.16□□□□□ -0.78
VPS53-220ENST00000576149 SNUPNO95149 360 aaKnown RBP10.16□□□□□ -0.78
VPS53-220ENST00000576149 BAG2O95816 211 aa10.16□□□□□ -0.78
VPS53-220ENST00000576149 PDHA1P08559 390 aa10.16□□□□□ -0.78
VPS53-220ENST00000576149 CD1EP15812 388 aa10.16□□□□□ -0.78
VPS53-220ENST00000576149 ADSLP30566 484 aaPredicted RBP10.16□□□□□ -0.78
VPS53-220ENST00000576149 CLCN5P51795 746 aa10.16□□□□□ -0.78
VPS53-220ENST00000576149 MTTPP55157 894 aa10.16□□□□□ -0.78
VPS53-220ENST00000576149 MRPS35P82673 323 aaKnown RBP10.16□□□□□ -0.78
VPS53-220ENST00000576149 DSC2Q02487 901 aa10.16□□□□□ -0.78
VPS53-220ENST00000576149 TBL3Q12788 808 aaKnown RBP10.16□□□□□ -0.78
VPS53-220ENST00000576149 CCNIQ14094 377 aa10.16□□□□□ -0.78
VPS53-220ENST00000576149 MRPL58Q14197 206 aaKnown RBP10.16□□□□□ -0.78
VPS53-220ENST00000576149 SLC14A2Q15849 920 aa10.16□□□□□ -0.78
VPS53-220ENST00000576149 CTXN3Q4LDR2 81 aa10.16□□□□□ -0.78
VPS53-220ENST00000576149 MAP3K21Q5TCX8 1036 aa10.16□□□□□ -0.78
VPS53-220ENST00000576149 FBXL22Q6P050 247 aa10.16□□□□□ -0.78
VPS53-220ENST00000576149 GALNT7Q86SF2 657 aa10.16□□□□□ -0.78
VPS53-220ENST00000576149 HPS6Q86YV9 775 aa10.16□□□□□ -0.78
VPS53-220ENST00000576149 CCNYL1Q8N7R7 359 aa10.16□□□□□ -0.78
VPS53-220ENST00000576149 KDM1BQ8NB78 822 aa10.16□□□□□ -0.78
VPS53-220ENST00000576149 TXNDC5Q8NBS9 432 aaKnown RBP10.16□□□□□ -0.78
VPS53-220ENST00000576149 OR13J1Q8NGT2 312 aa10.16□□□□□ -0.78
VPS53-220ENST00000576149 GABPB2Q8TAK5 448 aaPredicted RBP10.16□□□□□ -0.78
VPS53-220ENST00000576149 GPR152Q8TDT2 470 aa10.16□□□□□ -0.78
VPS53-220ENST00000576149 JADE3Q92613 823 aa10.16□□□□□ -0.78
VPS53-220ENST00000576149 FBXO32Q969P5 355 aa10.16□□□□□ -0.78
VPS53-220ENST00000576149 ITFG2Q969R8 447 aa10.16□□□□□ -0.78
VPS53-220ENST00000576149 OLFM1Q99784 485 aa10.16□□□□□ -0.78
VPS53-220ENST00000576149 UNKQ9C0B0 810 aaKnown RBP10.16□□□□□ -0.78
VPS53-220ENST00000576149 OLA1Q9NTK5 396 aaKnown RBP10.16□□□□□ -0.78
VPS53-220ENST00000576149 NCKIPSDQ9NZQ3 722 aa10.16□□□□□ -0.78
VPS53-220ENST00000576149 CDYLQ9Y232 598 aa10.16□□□□□ -0.78
VPS53-220ENST00000576149 POMPQ9Y244 141 aa10.16□□□□□ -0.78
VPS53-220ENST00000576149 CCDC189A1A4V9 331 aa10.15□□□□□ -0.78
VPS53-220ENST00000576149 MROH6A6NGR9 719 aa10.15□□□□□ -0.78
VPS53-220ENST00000576149 IGLV3-27P01718 113 aa10.15□□□□□ -0.78
VPS53-220ENST00000576149 JUNP05412 331 aaKnown RBP10.15□□□□□ -0.78
VPS53-220ENST00000576149 ATP5F1P24539 256 aaPredicted RBP10.15□□□□□ -0.78
VPS53-220ENST00000576149 PPARGP37231 505 aaPredicted RBP10.15□□□□□ -0.78
VPS53-220ENST00000576149 FAM83EQ2M2I3 478 aa10.15□□□□□ -0.78
VPS53-220ENST00000576149 TECRLQ5HYJ1 363 aa10.15□□□□□ -0.78
VPS53-220ENST00000576149 RAP1GAP2Q684P5 730 aa10.15□□□□□ -0.78
VPS53-220ENST00000576149 IRGCQ6NXR0 463 aa10.15□□□□□ -0.78
VPS53-220ENST00000576149 PIWIL4Q7Z3Z4 852 aaKnown RBP10.15□□□□□ -0.78
VPS53-220ENST00000576149 CILP2Q8IUL8 1156 aa10.15□□□□□ -0.78
VPS53-220ENST00000576149 PGBD5Q8N414 524 aa10.15□□□□□ -0.78
VPS53-220ENST00000576149 RP9Q8TA86 221 aaKnown RBP10.15□□□□□ -0.78
VPS53-220ENST00000576149 ARRDC2Q8TBH0 407 aa10.15□□□□□ -0.78
VPS53-220ENST00000576149 NDNQ99608 321 aa10.15□□□□□ -0.78
VPS53-220ENST00000576149 XRN2Q9H0D6 950 aaKnown RBP eCLIP10.15□□□□□ -0.78
VPS53-220ENST00000576149 RNF186Q9NXI6 227 aa10.15□□□□□ -0.78
VPS53-220ENST00000576149 MARCH2Q9P0N8 246 aa10.15□□□□□ -0.78
VPS53-220ENST00000576149 THSD7BQ9C0I4 1608 aa10.15□□□□□ -0.78
VPS53-220ENST00000576149 LOC285095A0A1B0GVY8 99 aa10.15□□□□□ -0.79
VPS53-220ENST00000576149 OR6C75A6NL08 312 aa10.15□□□□□ -0.79
VPS53-220ENST00000576149 EIF4E1BA6NMX2 242 aaKnown RBP10.15□□□□□ -0.79
VPS53-220ENST00000576149 SLC7A4O43246 635 aa10.15□□□□□ -0.79
VPS53-220ENST00000576149 BUD23O43709 281 aaKnown RBP10.15□□□□□ -0.79
VPS53-220ENST00000576149 RAMP2O60895 175 aa10.15□□□□□ -0.79
VPS53-220ENST00000576149 RTN3O95197 1032 aaPredicted RBP10.15□□□□□ -0.79
VPS53-220ENST00000576149 NAT1P18440 290 aa10.15□□□□□ -0.79
VPS53-220ENST00000576149 PFKPQ01813 784 aa10.15□□□□□ -0.79
VPS53-220ENST00000576149 IL10RBQ08334 325 aa10.15□□□□□ -0.79
VPS53-220ENST00000576149 CSHL1Q14406 222 aa10.15□□□□□ -0.79
VPS53-220ENST00000576149 SIRPB2Q5JXA9 342 aa10.15□□□□□ -0.79
VPS53-220ENST00000576149 RASIP1Q5U651 963 aa10.15□□□□□ -0.79
VPS53-220ENST00000576149 AGAP9Q5VTM2 703 aa10.15□□□□□ -0.79
VPS53-220ENST00000576149 FAM171A1Q5VUB5 890 aa10.15□□□□□ -0.79
VPS53-220ENST00000576149 TRIM67Q6ZTA4 783 aa10.15□□□□□ -0.79
VPS53-220ENST00000576149 SNX32Q86XE0 403 aa10.15□□□□□ -0.79
VPS53-220ENST00000576149 MIB1Q86YT6 1006 aa10.15□□□□□ -0.79
VPS53-220ENST00000576149 SLC26A7Q8TE54 656 aa10.15□□□□□ -0.79
VPS53-220ENST00000576149 PYDC1Q8WXC3 89 aa10.15□□□□□ -0.79
VPS53-220ENST00000576149 CCDC124Q96CT7 223 aaKnown RBP10.15□□□□□ -0.79
VPS53-220ENST00000576149 SGF29Q96ES7 293 aa10.15□□□□□ -0.79
VPS53-220ENST00000576149 TSPAN17Q96FV3 270 aa10.15□□□□□ -0.79
VPS53-220ENST00000576149 MAELQ96JY0 434 aaKnown RBP10.15□□□□□ -0.79
VPS53-220ENST00000576149 GLT1D1Q96MS3 346 aa10.15□□□□□ -0.79
VPS53-220ENST00000576149 POMKQ9H5K3 350 aa10.15□□□□□ -0.79
VPS53-220ENST00000576149 TLR8Q9NR97 1041 aaKnown RBP10.15□□□□□ -0.79
VPS53-220ENST00000576149 TTC24A2A3L6 582 aaPredicted RBP10.14□□□□□ -0.79
VPS53-220ENST00000576149 SOAT2O75908 522 aa10.14□□□□□ -0.79
VPS53-220ENST00000576149 ATXN1LP0C7T5 689 aaKnown RBP10.14□□□□□ -0.79
VPS53-220ENST00000576149 TAF10Q12962 218 aa10.14□□□□□ -0.79
VPS53-220ENST00000576149 SERINC3Q13530 473 aa10.14□□□□□ -0.79
VPS53-220ENST00000576149 HERC3Q15034 1050 aa10.14□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms