RNA–Protein interactions for RNA: ENST00000573936.5

CHD3-216, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 3

Gene CHD3, Length 749 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-216ENST00000573936 SOCS5O75159 536 aa11.14□□□□□ -0.63
CHD3-216ENST00000573936 FSBPO95073 299 aa11.14□□□□□ -0.63
CHD3-216ENST00000573936 JCHAINP01591 159 aa11.14□□□□□ -0.63
CHD3-216ENST00000573936 CR2P20023 1033 aa11.14□□□□□ -0.63
CHD3-216ENST00000573936 CA4P22748 312 aa11.14□□□□□ -0.63
CHD3-216ENST00000573936 NFKBIAP25963 317 aa11.14□□□□□ -0.63
CHD3-216ENST00000573936 PTGER3P43115 390 aa11.14□□□□□ -0.63
CHD3-216ENST00000573936 METAP1P53582 386 aa11.14□□□□□ -0.63
CHD3-216ENST00000573936 POLR2LP62875 67 aaKnown RBP11.14□□□□□ -0.63
CHD3-216ENST00000573936 IFI35P80217 286 aaPredicted RBP11.14□□□□□ -0.63
CHD3-216ENST00000573936 NOMO1Q15155 1222 aa11.14□□□□□ -0.63
CHD3-216ENST00000573936 LLGL1Q15334 1064 aa11.14□□□□□ -0.63
CHD3-216ENST00000573936 DUOXA1Q1HG43 343 aa11.14□□□□□ -0.63
CHD3-216ENST00000573936 PSAPL1Q6NUJ1 521 aa11.14□□□□□ -0.63
CHD3-216ENST00000573936 PARS2Q7L3T8 475 aaKnown RBP11.14□□□□□ -0.63
CHD3-216ENST00000573936 ARMCX6Q7L4S7 300 aa11.14□□□□□ -0.63
CHD3-216ENST00000573936 TTC7BQ86TV6 843 aa11.14□□□□□ -0.63
CHD3-216ENST00000573936 PRPF39Q86UA1 669 aaKnown RBP11.14□□□□□ -0.63
CHD3-216ENST00000573936 TRIM69Q86WT6 500 aa11.14□□□□□ -0.63
CHD3-216ENST00000573936 REXO1L1PQ8IX06 675 aa11.14□□□□□ -0.63
CHD3-216ENST00000573936 PGBD5Q8N414 524 aa11.14□□□□□ -0.63
CHD3-216ENST00000573936 PAF1Q8N7H5 531 aa11.14□□□□□ -0.63
CHD3-216ENST00000573936 HAUS1Q96CS2 278 aa11.14□□□□□ -0.63
CHD3-216ENST00000573936 FEM1CQ96JP0 617 aa11.14□□□□□ -0.63
CHD3-216ENST00000573936 IL12RB2Q99665 862 aa11.14□□□□□ -0.63
CHD3-216ENST00000573936 PILRBQ9UKJ0 227 aa11.14□□□□□ -0.63
CHD3-216ENST00000573936 ATP8A1Q9Y2Q0 1164 aa11.14□□□□□ -0.63
CHD3-216ENST00000573936 AKAP13Q12802 2813 aa11.14□□□□□ -0.63
CHD3-216ENST00000573936 NYNRINQ9P2P1 1898 aaKnown RBP11.14□□□□□ -0.63
CHD3-216ENST00000573936 SPEGQ15772 3267 aa11.14□□□□□ -0.63
CHD3-216ENST00000573936 NUP205Q92621 2012 aa11.13□□□□□ -0.63
CHD3-216ENST00000573936 TSPAN11A1L157 253 aa11.13□□□□□ -0.63
CHD3-216ENST00000573936 H7C0C1 242 aa11.13□□□□□ -0.63
CHD3-216ENST00000573936 NEMP1O14524 444 aa11.13□□□□□ -0.63
CHD3-216ENST00000573936 TM4SF5O14894 197 aa11.13□□□□□ -0.63
CHD3-216ENST00000573936 MUSKO15146 869 aa11.13□□□□□ -0.63
CHD3-216ENST00000573936 TSPAN6O43657 245 aa11.13□□□□□ -0.63
CHD3-216ENST00000573936 KIF5CO60282 957 aa11.13□□□□□ -0.63
CHD3-216ENST00000573936 PCDH8O95206 1070 aa11.13□□□□□ -0.63
CHD3-216ENST00000573936 PIGNO95427 931 aa11.13□□□□□ -0.63
CHD3-216ENST00000573936 PECAM1P16284 738 aaPredicted RBP11.13□□□□□ -0.63
CHD3-216ENST00000573936 ITPKAP23677 461 aa11.13□□□□□ -0.63
CHD3-216ENST00000573936 CD27P26842 260 aa11.13□□□□□ -0.63
CHD3-216ENST00000573936 RGRP47804 291 aa11.13□□□□□ -0.63
CHD3-216ENST00000573936 ATP5OP48047 213 aa11.13□□□□□ -0.63
CHD3-216ENST00000573936 NOVA1P51513 510 aaKnown RBP11.13□□□□□ -0.63
CHD3-216ENST00000573936 MAXP61244 160 aa11.13□□□□□ -0.63
CHD3-216ENST00000573936 ADCY2Q08462 1091 aa11.13□□□□□ -0.63
CHD3-216ENST00000573936 ELP6Q0PNE2 266 aa11.13□□□□□ -0.63
CHD3-216ENST00000573936 ZNF211Q13398 564 aaPredicted RBP11.13□□□□□ -0.63
CHD3-216ENST00000573936 PRKD1Q15139 912 aaPredicted RBP11.13□□□□□ -0.63
CHD3-216ENST00000573936 TEX44Q53QW1 395 aa11.13□□□□□ -0.63
CHD3-216ENST00000573936 PLA2G2CQ5R387 149 aa11.13□□□□□ -0.63
CHD3-216ENST00000573936 PEAR1Q5VY43 1037 aaPredicted RBP11.13□□□□□ -0.63
CHD3-216ENST00000573936 ALG1LQ6GMV1 187 aa11.13□□□□□ -0.63
CHD3-216ENST00000573936 KIAA1161Q6NSJ0 714 aa11.13□□□□□ -0.63
CHD3-216ENST00000573936 ERAP2Q6P179 960 aa11.13□□□□□ -0.63
CHD3-216ENST00000573936 ZC3H18Q86VM9 953 aaKnown RBP11.13□□□□□ -0.63
CHD3-216ENST00000573936 ABCA7Q8IZY2 2146 aa11.13□□□□□ -0.63
CHD3-216ENST00000573936 NDUFAF2Q8N183 169 aa11.13□□□□□ -0.63
CHD3-216ENST00000573936 C17orf53Q8N3J3 647 aaPredicted RBP11.13□□□□□ -0.63
CHD3-216ENST00000573936 SNX19Q92543 992 aa11.13□□□□□ -0.63
CHD3-216ENST00000573936 BIRC7Q96CA5 298 aa11.13□□□□□ -0.63
CHD3-216ENST00000573936 VAT1Q99536 393 aa11.13□□□□□ -0.63
CHD3-216ENST00000573936 SEMA3CQ99985 751 aa11.13□□□□□ -0.63
CHD3-216ENST00000573936 NUSAP1Q9BXS6 441 aaKnown RBP11.13□□□□□ -0.63
CHD3-216ENST00000573936 FRMD8P1Q9BZ68 369 aaPredicted RBP11.13□□□□□ -0.63
CHD3-216ENST00000573936 CARD9Q9H257 536 aa11.13□□□□□ -0.63
CHD3-216ENST00000573936 NOD2Q9HC29 1040 aa11.13□□□□□ -0.63
CHD3-216ENST00000573936 KCND1Q9NSA2 647 aa11.13□□□□□ -0.63
CHD3-216ENST00000573936 TRMT1Q9NXH9 659 aaKnown RBP11.13□□□□□ -0.63
CHD3-216ENST00000573936 SEPT10Q9P0V9 454 aa11.13□□□□□ -0.63
CHD3-216ENST00000573936 SAE1Q9UBE0 346 aaPredicted RBP11.13□□□□□ -0.63
CHD3-216ENST00000573936 ZBTB32Q9Y2Y4 487 aaPredicted RBP11.13□□□□□ -0.63
CHD3-216ENST00000573936 JRKLQ9Y4A0 524 aa11.13□□□□□ -0.63
CHD3-216ENST00000573936 TTLL3Q9Y4R7 772 aa11.13□□□□□ -0.63
CHD3-216ENST00000573936 FADS3Q9Y5Q0 445 aa11.13□□□□□ -0.63
CHD3-216ENST00000573936 PKD1L2Q7Z442 2459 aa11.13□□□□□ -0.63
CHD3-216ENST00000573936 FAM208BQ5VWN6 2430 aa11.13□□□□□ -0.63
CHD3-216ENST00000573936 ANKRD11Q6UB99 2663 aaPredicted RBP11.12□□□□□ -0.63
CHD3-216ENST00000573936 A0A1B0GTW7 788 aa11.12□□□□□ -0.63
CHD3-216ENST00000573936 A0A1W2PPC4 97 aa11.12□□□□□ -0.63
CHD3-216ENST00000573936 UPK3BL1B0FP48 263 aa11.12□□□□□ -0.63
CHD3-216ENST00000573936 C10orf142B7Z368 130 aa11.12□□□□□ -0.63
CHD3-216ENST00000573936 UPK3BL2E5RIL1 263 aa11.12□□□□□ -0.63
CHD3-216ENST00000573936 KCNK1O00180 336 aa11.12□□□□□ -0.63
CHD3-216ENST00000573936 RNF103O00237 685 aa11.12□□□□□ -0.63
CHD3-216ENST00000573936 TRAFD1O14545 582 aaPredicted RBP11.12□□□□□ -0.63
CHD3-216ENST00000573936 KHNYNO15037 678 aaKnown RBP11.12□□□□□ -0.63
CHD3-216ENST00000573936 HTRA2O43464 458 aaPredicted RBP11.12□□□□□ -0.63
CHD3-216ENST00000573936 RNGTTO60942 597 aaKnown RBP11.12□□□□□ -0.63
CHD3-216ENST00000573936 HLA-DQB2P05538 268 aa11.12□□□□□ -0.63
CHD3-216ENST00000573936 SERPINF2P08697 491 aa11.12□□□□□ -0.63
CHD3-216ENST00000573936 TIMP2P16035 220 aa11.12□□□□□ -0.63
CHD3-216ENST00000573936 TAS2R38P59533 333 aa11.12□□□□□ -0.63
CHD3-216ENST00000573936 EIF3EP60228 445 aaKnown RBP11.12□□□□□ -0.63
CHD3-216ENST00000573936 RPS21P63220 83 aaKnown RBP11.12□□□□□ -0.63
CHD3-216ENST00000573936 OTUD4Q01804 1114 aaKnown RBP11.12□□□□□ -0.63
CHD3-216ENST00000573936 UGP2Q16851 508 aa11.12□□□□□ -0.63
CHD3-216ENST00000573936 SLC45A4Q5BKX6 768 aa11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms