RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 ARFGAP1Q8N6T3 406 aa6.8□□□□□ -1.32
VPS53-213ENST00000572334 RTL3Q8N8U3 475 aaKnown RBP6.8□□□□□ -1.32
VPS53-213ENST00000572334 MSANTD4Q8NCY6 345 aa6.8□□□□□ -1.32
VPS53-213ENST00000572334 LSM14AQ8ND56 463 aaKnown RBP6.8□□□□□ -1.32
VPS53-213ENST00000572334 C3orf20Q8ND61 904 aa6.8□□□□□ -1.32
VPS53-213ENST00000572334 MAPK15Q8TD08 544 aa6.8□□□□□ -1.32
VPS53-213ENST00000572334 LMX1AQ8TE12 382 aa6.8□□□□□ -1.32
VPS53-213ENST00000572334 SNRNP27Q8WVK2 155 aaKnown RBP6.8□□□□□ -1.32
VPS53-213ENST00000572334 HMCESQ96FZ2 354 aa6.8□□□□□ -1.32
VPS53-213ENST00000572334 ATXN7L3BQ96GX2 97 aa6.8□□□□□ -1.32
VPS53-213ENST00000572334 NAF1Q96HR8 494 aaKnown RBP6.8□□□□□ -1.32
VPS53-213ENST00000572334 PDLIM2Q96JY6 352 aa6.8□□□□□ -1.32
VPS53-213ENST00000572334 TBATAQ96M53 351 aa6.8□□□□□ -1.32
VPS53-213ENST00000572334 SLC46A1Q96NT5 459 aa6.8□□□□□ -1.32
VPS53-213ENST00000572334 DEPDC7Q96QD5 511 aa6.8□□□□□ -1.32
VPS53-213ENST00000572334 SEMA4CQ9C0C4 833 aa6.8□□□□□ -1.32
VPS53-213ENST00000572334 TTYH3Q9C0H2 523 aa6.8□□□□□ -1.32
VPS53-213ENST00000572334 LRRC19Q9H756 370 aa6.8□□□□□ -1.32
VPS53-213ENST00000572334 POLR1BQ9H9Y6 1135 aa6.8□□□□□ -1.32
VPS53-213ENST00000572334 CPNE5Q9HCH3 593 aa6.8□□□□□ -1.32
VPS53-213ENST00000572334 FANCLQ9NW38 375 aa6.8□□□□□ -1.32
VPS53-213ENST00000572334 OGFRQ9NZT2 677 aa6.8□□□□□ -1.32
VPS53-213ENST00000572334 DKK3Q9UBP4 350 aa6.8□□□□□ -1.32
VPS53-213ENST00000572334 RABGEF1Q9UJ41 708 aa6.8□□□□□ -1.32
VPS53-213ENST00000572334 FZD10Q9ULW2 581 aa6.8□□□□□ -1.32
VPS53-213ENST00000572334 SATB2Q9UPW6 733 aa6.8□□□□□ -1.32
VPS53-213ENST00000572334 COQ6Q9Y2Z9 468 aa6.8□□□□□ -1.32
VPS53-213ENST00000572334 SPENQ96T58 3664 aaKnown RBP6.8□□□□□ -1.32
VPS53-213ENST00000572334 SPTA1P02549 2419 aa6.79□□□□□ -1.32
VPS53-213ENST00000572334 TEX51A0A1B0GUA7 166 aa6.79□□□□□ -1.32
VPS53-213ENST00000572334 CPED1A4D0V7 1026 aa6.79□□□□□ -1.32
VPS53-213ENST00000572334 LRRC10BA6NIK2 292 aa6.79□□□□□ -1.32
VPS53-213ENST00000572334 RASA4BC9J798 803 aa6.79□□□□□ -1.32
VPS53-213ENST00000572334 H3BM21 787 aa6.79□□□□□ -1.32
VPS53-213ENST00000572334 J3KR12 359 aa6.79□□□□□ -1.32
VPS53-213ENST00000572334 PES1O00541 588 aaKnown RBP6.79□□□□□ -1.32
VPS53-213ENST00000572334 NTN3O00634 580 aaPredicted RBP6.79□□□□□ -1.32
VPS53-213ENST00000572334 RASA4O43374 803 aa6.79□□□□□ -1.32
VPS53-213ENST00000572334 BUB1O43683 1085 aa6.79□□□□□ -1.32
VPS53-213ENST00000572334 TM7SF2O76062 418 aa6.79□□□□□ -1.32
VPS53-213ENST00000572334 KRT3P12035 628 aa6.79□□□□□ -1.32
VPS53-213ENST00000572334 TSHRP16473 764 aa6.79□□□□□ -1.32
VPS53-213ENST00000572334 ETFBP38117 255 aa6.79□□□□□ -1.32
VPS53-213ENST00000572334 EIF4A3P38919 411 aaKnown RBP6.79□□□□□ -1.32
VPS53-213ENST00000572334 STAT1P42224 750 aa6.79□□□□□ -1.32
VPS53-213ENST00000572334 DUSP3P51452 185 aaPredicted RBP6.79□□□□□ -1.32
VPS53-213ENST00000572334 ZNF143P52747 638 aaPredicted RBP6.79□□□□□ -1.32
VPS53-213ENST00000572334 COPB1P53618 953 aaKnown RBP6.79□□□□□ -1.32
VPS53-213ENST00000572334 ADKP55263 362 aaKnown RBP6.79□□□□□ -1.32
VPS53-213ENST00000572334 GEMIN4P57678 1058 aaKnown RBP6.79□□□□□ -1.32
VPS53-213ENST00000572334 PCBP4P57723 403 aaKnown RBP6.79□□□□□ -1.32
VPS53-213ENST00000572334 ERVPABLB-1P60509 514 aa6.79□□□□□ -1.32
VPS53-213ENST00000572334 YPEL5P62699 121 aa6.79□□□□□ -1.32
VPS53-213ENST00000572334 CXADRP78310 365 aa6.79□□□□□ -1.32
VPS53-213ENST00000572334 RALGDSQ12967 914 aa6.79□□□□□ -1.32
VPS53-213ENST00000572334 SGCGQ13326 291 aa6.79□□□□□ -1.32
VPS53-213ENST00000572334 AGERQ15109 404 aa6.79□□□□□ -1.32
VPS53-213ENST00000572334 IRF4Q15306 451 aa6.79□□□□□ -1.32
VPS53-213ENST00000572334 CA9Q16790 459 aa6.79□□□□□ -1.32
VPS53-213ENST00000572334 ALG11Q2TAA5 492 aa6.79□□□□□ -1.32
VPS53-213ENST00000572334 PRRT3Q5FWE3 981 aa6.79□□□□□ -1.32
VPS53-213ENST00000572334 C3orf38Q5JPI3 329 aa6.79□□□□□ -1.32
VPS53-213ENST00000572334 C6orf132Q5T0Z8 1188 aa6.79□□□□□ -1.32
VPS53-213ENST00000572334 LCE2DQ5TA82 110 aaPredicted RBP6.79□□□□□ -1.32
VPS53-213ENST00000572334 AFMIDQ63HM1 303 aa6.79□□□□□ -1.32
VPS53-213ENST00000572334 TRIM72Q6ZMU5 477 aa6.79□□□□□ -1.32
VPS53-213ENST00000572334 MACC1Q6ZN28 852 aa6.79□□□□□ -1.32
VPS53-213ENST00000572334 CYP4V2Q6ZWL3 525 aaPredicted RBP6.79□□□□□ -1.32
VPS53-213ENST00000572334 ZNF771Q7L3S4 317 aaPredicted RBP6.79□□□□□ -1.32
VPS53-213ENST00000572334 IRF2BP2Q7Z5L9 587 aa6.79□□□□□ -1.32
VPS53-213ENST00000572334 SLFN11Q7Z7L1 901 aa6.79□□□□□ -1.32
VPS53-213ENST00000572334 TTC7BQ86TV6 843 aa6.79□□□□□ -1.32
VPS53-213ENST00000572334 DNAAF5Q86Y56 855 aa6.79□□□□□ -1.32
VPS53-213ENST00000572334 SFTPA2Q8IWL1 248 aa6.79□□□□□ -1.32
VPS53-213ENST00000572334 UMODL1-AS1Q8N2C9 162 aa6.79□□□□□ -1.32
VPS53-213ENST00000572334 PELI3Q8N2H9 469 aa6.79□□□□□ -1.32
VPS53-213ENST00000572334 RYBPQ8N488 228 aaPredicted RBP6.79□□□□□ -1.32
VPS53-213ENST00000572334 ZNF248Q8NDW4 579 aa6.79□□□□□ -1.32
VPS53-213ENST00000572334 TTC9Q92623 222 aa6.79□□□□□ -1.32
VPS53-213ENST00000572334 VCPIP1Q96JH7 1222 aa6.79□□□□□ -1.32
VPS53-213ENST00000572334 EXOC2Q96KP1 924 aa6.79□□□□□ -1.32
VPS53-213ENST00000572334 PEBP4Q96S96 227 aa6.79□□□□□ -1.32
VPS53-213ENST00000572334 EPAS1Q99814 870 aa6.79□□□□□ -1.32
VPS53-213ENST00000572334 WRAP53Q9BUR4 548 aaKnown RBP6.79□□□□□ -1.32
VPS53-213ENST00000572334 OSBPL1AQ9BXW6 950 aa6.79□□□□□ -1.32
VPS53-213ENST00000572334 CPEB1Q9BZB8 566 aaKnown RBP6.79□□□□□ -1.32
VPS53-213ENST00000572334 TAS2R14Q9NYV8 317 aa6.79□□□□□ -1.32
VPS53-213ENST00000572334 ADAM22Q9P0K1 906 aa6.79□□□□□ -1.32
VPS53-213ENST00000572334 SPASTQ9UBP0 616 aa6.79□□□□□ -1.32
VPS53-213ENST00000572334 APOBEC3BQ9UH17 382 aaKnown RBP6.79□□□□□ -1.32
VPS53-213ENST00000572334 LIMA1Q9UHB6 759 aaKnown RBP6.79□□□□□ -1.32
VPS53-213ENST00000572334 DACH1Q9UI36 760 aa6.79□□□□□ -1.32
VPS53-213ENST00000572334 A0A1W2PQM1 296 aa6.78□□□□□ -1.32
VPS53-213ENST00000572334 ZSCAN5CA6NGD5 496 aaPredicted RBP6.78□□□□□ -1.32
VPS53-213ENST00000572334 LGALS16A8MUM7 142 aa6.78□□□□□ -1.32
VPS53-213ENST00000572334 NEMP1O14524 444 aa6.78□□□□□ -1.32
VPS53-213ENST00000572334 RIOK3O14730 519 aaKnown RBP6.78□□□□□ -1.32
VPS53-213ENST00000572334 CLGNO14967 610 aa6.78□□□□□ -1.32
VPS53-213ENST00000572334 MUSKO15146 869 aa6.78□□□□□ -1.32
VPS53-213ENST00000572334 EFSO43281 561 aa6.78□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 56.4 ms