RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 POLGP54098 1239 aaPredicted RBP6.33□□□□□ -1.4
VPS53-212ENST00000572259 NPEPPSP55786 919 aa6.33□□□□□ -1.4
VPS53-212ENST00000572259 NLRP11P59045 1033 aaKnown RBP6.33□□□□□ -1.4
VPS53-212ENST00000572259 POLR2FP61218 127 aaKnown RBP6.33□□□□□ -1.4
VPS53-212ENST00000572259 MGAT3Q09327 533 aa6.33□□□□□ -1.4
VPS53-212ENST00000572259 GALNT2Q10471 571 aa6.33□□□□□ -1.4
VPS53-212ENST00000572259 COX10Q12887 443 aa6.33□□□□□ -1.4
VPS53-212ENST00000572259 MRPL28Q13084 256 aaKnown RBP6.33□□□□□ -1.4
VPS53-212ENST00000572259 CTTNQ14247 550 aaKnown RBP6.33□□□□□ -1.4
VPS53-212ENST00000572259 MXD4Q14582 209 aaPredicted RBP6.33□□□□□ -1.4
VPS53-212ENST00000572259 LPIN1Q14693 890 aa6.33□□□□□ -1.4
VPS53-212ENST00000572259 GPNMBQ14956 572 aa6.33□□□□□ -1.4
VPS53-212ENST00000572259 GPR68Q15743 365 aa6.33□□□□□ -1.4
VPS53-212ENST00000572259 TBCEQ15813 527 aaPredicted RBP6.33□□□□□ -1.4
VPS53-212ENST00000572259 WSCD2Q2TBF2 565 aa6.33□□□□□ -1.4
VPS53-212ENST00000572259 ANKDD1AQ495B1 522 aa6.33□□□□□ -1.4
VPS53-212ENST00000572259 PRAMEF14Q5SWL7 426 aa6.33□□□□□ -1.4
VPS53-212ENST00000572259 IRGCQ6NXR0 463 aa6.33□□□□□ -1.4
VPS53-212ENST00000572259 RNF44Q7L0R7 432 aa6.33□□□□□ -1.4
VPS53-212ENST00000572259 ANKS1BQ7Z6G8 1248 aa6.33□□□□□ -1.4
VPS53-212ENST00000572259 ZNF410Q86VK4 478 aa6.33□□□□□ -1.4
VPS53-212ENST00000572259 RHOT1Q8IXI2 618 aa6.33□□□□□ -1.4
VPS53-212ENST00000572259 CMTM4Q8IZR5 234 aa6.33□□□□□ -1.4
VPS53-212ENST00000572259 TTC39CQ8N584 583 aa6.33□□□□□ -1.4
VPS53-212ENST00000572259 CCDC150Q8NCX0 1101 aa6.33□□□□□ -1.4
VPS53-212ENST00000572259 FBXO30Q8TB52 745 aa6.33□□□□□ -1.4
VPS53-212ENST00000572259 BRIX1Q8TDN6 353 aaKnown RBP6.33□□□□□ -1.4
VPS53-212ENST00000572259 HSPH1Q92598 858 aa6.33□□□□□ -1.4
VPS53-212ENST00000572259 TOP1MTQ969P6 601 aa6.33□□□□□ -1.4
VPS53-212ENST00000572259 MRGPRX1Q96LB2 322 aa6.33□□□□□ -1.4
VPS53-212ENST00000572259 UROC1Q96N76 676 aa6.33□□□□□ -1.4
VPS53-212ENST00000572259 LRRC37BQ96QE4 947 aa6.33□□□□□ -1.4
VPS53-212ENST00000572259 LMF1Q96S06 567 aa6.33□□□□□ -1.4
VPS53-212ENST00000572259 REEP2Q9BRK0 252 aa6.33□□□□□ -1.4
VPS53-212ENST00000572259 RTKNQ9BST9 563 aa6.33□□□□□ -1.4
VPS53-212ENST00000572259 POLR3CQ9BUI4 534 aaPredicted RBP6.33□□□□□ -1.4
VPS53-212ENST00000572259 TRIM54Q9BYV2 358 aa6.33□□□□□ -1.4
VPS53-212ENST00000572259 MANSC1Q9H8J5 431 aa6.33□□□□□ -1.4
VPS53-212ENST00000572259 SEC61A2Q9H9S3 476 aa6.33□□□□□ -1.4
VPS53-212ENST00000572259 MTMR10Q9NXD2 777 aa6.33□□□□□ -1.4
VPS53-212ENST00000572259 SUCLA2Q9P2R7 463 aaPredicted RBP6.33□□□□□ -1.4
VPS53-212ENST00000572259 UBA2Q9UBT2 640 aaPredicted RBP6.33□□□□□ -1.4
VPS53-212ENST00000572259 LRWD1Q9UFC0 647 aa6.33□□□□□ -1.4
VPS53-212ENST00000572259 FBXL5Q9UKA1 691 aa6.33□□□□□ -1.4
VPS53-212ENST00000572259 PADI3Q9ULW8 664 aa6.33□□□□□ -1.4
VPS53-212ENST00000572259 MTO1Q9Y2Z2 717 aaKnown RBP6.33□□□□□ -1.4
VPS53-212ENST00000572259 PCDHB7Q9Y5E2 793 aa6.33□□□□□ -1.4
VPS53-212ENST00000572259 LYVE1Q9Y5Y7 322 aa6.33□□□□□ -1.4
VPS53-212ENST00000572259 HS3ST4Q9Y661 456 aa6.33□□□□□ -1.4
VPS53-212ENST00000572259 MYH11P35749 1972 aa6.33□□□□□ -1.4
VPS53-212ENST00000572259 PRRC2BQ5JSZ5 2229 aaKnown RBP6.33□□□□□ -1.4
VPS53-212ENST00000572259 VPS37CA5D8V6 355 aaPredicted RBP6.32□□□□□ -1.4
VPS53-212ENST00000572259 FAM25EA8MYX2 175 aa6.32□□□□□ -1.4
VPS53-212ENST00000572259 PTGES3LE9PB15 166 aa6.32□□□□□ -1.4
VPS53-212ENST00000572259 LAMTOR5O43504 91 aa6.32□□□□□ -1.4
VPS53-212ENST00000572259 ZBTB14O43829 449 aa6.32□□□□□ -1.4
VPS53-212ENST00000572259 TBX10O75333 385 aa6.32□□□□□ -1.4
VPS53-212ENST00000572259 SLITRK3O94933 977 aa6.32□□□□□ -1.4
VPS53-212ENST00000572259 LYPLA2O95372 231 aa6.32□□□□□ -1.4
VPS53-212ENST00000572259 GASTP01350 101 aa6.32□□□□□ -1.4
VPS53-212ENST00000572259 VTNP04004 478 aa6.32□□□□□ -1.4
VPS53-212ENST00000572259 NPPBP16860 134 aa6.32□□□□□ -1.4
VPS53-212ENST00000572259 GAP43P17677 238 aa6.32□□□□□ -1.4
VPS53-212ENST00000572259 CR2P20023 1033 aa6.32□□□□□ -1.4
VPS53-212ENST00000572259 SFPQP23246 707 aaKnown RBP eCLIP6.32□□□□□ -1.4
VPS53-212ENST00000572259 RPA1P27694 616 aa6.32□□□□□ -1.4
VPS53-212ENST00000572259 CD52P31358 61 aa6.32□□□□□ -1.4
VPS53-212ENST00000572259 AKT1P31749 480 aa6.32□□□□□ -1.4
VPS53-212ENST00000572259 GRK5P34947 590 aa6.32□□□□□ -1.4
VPS53-212ENST00000572259 CNR2P34972 360 aa6.32□□□□□ -1.4
VPS53-212ENST00000572259 PSMC2P35998 433 aaKnown RBP6.32□□□□□ -1.4
VPS53-212ENST00000572259 EIF2DP41214 584 aaKnown RBP6.32□□□□□ -1.4
VPS53-212ENST00000572259 CLCN3P51790 818 aa6.32□□□□□ -1.4
VPS53-212ENST00000572259 RABGGTBP53611 331 aa6.32□□□□□ -1.4
VPS53-212ENST00000572259 CYP4A11Q02928 519 aa6.32□□□□□ -1.4
VPS53-212ENST00000572259 SLC14A1Q13336 389 aa6.32□□□□□ -1.4
VPS53-212ENST00000572259 MPP3Q13368 585 aa6.32□□□□□ -1.4
VPS53-212ENST00000572259 TFDP1Q14186 410 aa6.32□□□□□ -1.4
VPS53-212ENST00000572259 UGCGQ16739 394 aa6.32□□□□□ -1.4
VPS53-212ENST00000572259 MST1LQ2TV78 715 aa6.32□□□□□ -1.4
VPS53-212ENST00000572259 ARHGAP15Q53QZ3 475 aa6.32□□□□□ -1.4
VPS53-212ENST00000572259 KRT79Q5XKE5 535 aa6.32□□□□□ -1.4
VPS53-212ENST00000572259 CYP20A1Q6UW02 462 aa6.32□□□□□ -1.4
VPS53-212ENST00000572259 CCBE1Q6UXH8 406 aaPredicted RBP6.32□□□□□ -1.4
VPS53-212ENST00000572259 ANO5Q75V66 913 aa6.32□□□□□ -1.4
VPS53-212ENST00000572259 Q7L0L9 218 aa6.32□□□□□ -1.4
VPS53-212ENST00000572259 RHPN2Q8IUC4 686 aa6.32□□□□□ -1.4
VPS53-212ENST00000572259 PQLC1Q8N2U9 271 aa6.32□□□□□ -1.4
VPS53-212ENST00000572259 DEPDC1BQ8WUY9 529 aa6.32□□□□□ -1.4
VPS53-212ENST00000572259 PSPC1Q8WXF1 523 aaKnown RBP6.32□□□□□ -1.4
VPS53-212ENST00000572259 PTP4A1Q93096 173 aa6.32□□□□□ -1.4
VPS53-212ENST00000572259 CHFRQ96EP1 664 aa6.32□□□□□ -1.4
VPS53-212ENST00000572259 ZNF764Q96H86 408 aaPredicted RBP6.32□□□□□ -1.4
VPS53-212ENST00000572259 CABS1Q96KC9 395 aa6.32□□□□□ -1.4
VPS53-212ENST00000572259 SNX27Q96L92 541 aa6.32□□□□□ -1.4
VPS53-212ENST00000572259 HSD17B14Q9BPX1 270 aa6.32□□□□□ -1.4
VPS53-212ENST00000572259 EPC1Q9H2F5 836 aa6.32□□□□□ -1.4
VPS53-212ENST00000572259 ADAM7Q9H2U9 754 aa6.32□□□□□ -1.4
VPS53-212ENST00000572259 MUC13Q9H3R2 512 aa6.32□□□□□ -1.4
VPS53-212ENST00000572259 ZSCAN16Q9H4T2 348 aaPredicted RBP6.32□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms