RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 ZMPSTE24O75844 475 aa8.04□□□□□ -1.12
VPS39-213ENST00000570062 NFATC1O95644 943 aa8.04□□□□□ -1.12
VPS39-213ENST00000570062 IGSF6O95976 241 aa8.04□□□□□ -1.12
VPS39-213ENST00000570062 MT-CYBP00156 380 aaPredicted RBP8.04□□□□□ -1.12
VPS39-213ENST00000570062 ASLP04424 464 aa8.04□□□□□ -1.12
VPS39-213ENST00000570062 MPOP05164 745 aa8.04□□□□□ -1.12
VPS39-213ENST00000570062 GSTA1P08263 222 aa8.04□□□□□ -1.12
VPS39-213ENST00000570062 COL6A2P12110 1019 aa8.04□□□□□ -1.12
VPS39-213ENST00000570062 CHN1P15882 459 aa8.04□□□□□ -1.12
VPS39-213ENST00000570062 KRT4P19013 534 aa8.04□□□□□ -1.12
VPS39-213ENST00000570062 CR2P20023 1033 aa8.04□□□□□ -1.12
VPS39-213ENST00000570062 FSHRP23945 695 aa8.04□□□□□ -1.12
VPS39-213ENST00000570062 GCAP28676 217 aa8.04□□□□□ -1.12
VPS39-213ENST00000570062 LSP1P33241 339 aa8.04□□□□□ -1.12
VPS39-213ENST00000570062 IRS1P35568 1242 aa8.04□□□□□ -1.12
VPS39-213ENST00000570062 PPARGP37231 505 aaPredicted RBP8.04□□□□□ -1.12
VPS39-213ENST00000570062 GRIA1P42261 906 aa8.04□□□□□ -1.12
VPS39-213ENST00000570062 ATP1A2P50993 1020 aa8.04□□□□□ -1.12
VPS39-213ENST00000570062 RHOAP61586 193 aa8.04□□□□□ -1.12
VPS39-213ENST00000570062 SNRPD1P62314 119 aaKnown RBP8.04□□□□□ -1.12
VPS39-213ENST00000570062 POLR2LP62875 67 aaKnown RBP8.04□□□□□ -1.12
VPS39-213ENST00000570062 SLC18A2Q05940 514 aa8.04□□□□□ -1.12
VPS39-213ENST00000570062 NIPAL4Q0D2K0 466 aa8.04□□□□□ -1.12
VPS39-213ENST00000570062 USP4Q13107 963 aa8.04□□□□□ -1.12
VPS39-213ENST00000570062 PDGFRLQ15198 375 aa8.04□□□□□ -1.12
VPS39-213ENST00000570062 ZNF77Q15935 545 aa8.04□□□□□ -1.12
VPS39-213ENST00000570062 SYCP2LQ5T4T6 812 aa8.04□□□□□ -1.12
VPS39-213ENST00000570062 HHATQ5VTY9 493 aa8.04□□□□□ -1.12
VPS39-213ENST00000570062 ZDHHC20Q5W0Z9 365 aa8.04□□□□□ -1.12
VPS39-213ENST00000570062 DENND5AQ6IQ26 1287 aa8.04□□□□□ -1.12
VPS39-213ENST00000570062 CES5AQ6NT32 575 aa8.04□□□□□ -1.12
VPS39-213ENST00000570062 MRNIPQ6NTE8 343 aa8.04□□□□□ -1.12
VPS39-213ENST00000570062 MICALCLQ6ZW33 695 aa8.04□□□□□ -1.12
VPS39-213ENST00000570062 GRASPQ7Z6J2 395 aaPredicted RBP8.04□□□□□ -1.12
VPS39-213ENST00000570062 SDCCAG8Q86SQ7 713 aaPredicted RBP8.04□□□□□ -1.12
VPS39-213ENST00000570062 CNTN4Q8IWV2 1026 aa8.04□□□□□ -1.12
VPS39-213ENST00000570062 BBS7Q8IWZ6 715 aa8.04□□□□□ -1.12
VPS39-213ENST00000570062 AHI1Q8N157 1196 aa8.04□□□□□ -1.12
VPS39-213ENST00000570062 DDX51Q8N8A6 666 aaKnown RBP eCLIP8.04□□□□□ -1.12
VPS39-213ENST00000570062 KDM1BQ8NB78 822 aa8.04□□□□□ -1.12
VPS39-213ENST00000570062 NETO2Q8NC67 525 aa8.04□□□□□ -1.12
VPS39-213ENST00000570062 OR7D4Q8NG98 312 aa8.04□□□□□ -1.12
VPS39-213ENST00000570062 SPATA22Q8NHS9 363 aa8.04□□□□□ -1.12
VPS39-213ENST00000570062 LRRN4Q8WUT4 740 aa8.04□□□□□ -1.12
VPS39-213ENST00000570062 SMARCD2Q92925 531 aa8.04□□□□□ -1.12
VPS39-213ENST00000570062 ITPKCQ96DU7 683 aa8.04□□□□□ -1.12
VPS39-213ENST00000570062 TSNARE1Q96NA8 513 aa8.04□□□□□ -1.12
VPS39-213ENST00000570062 TUBGCP5Q96RT8 1024 aa8.04□□□□□ -1.12
VPS39-213ENST00000570062 SLC22A12Q96S37 553 aa8.04□□□□□ -1.12
VPS39-213ENST00000570062 TCF12Q99081 682 aa8.04□□□□□ -1.12
VPS39-213ENST00000570062 TTC1Q99614 292 aa8.04□□□□□ -1.12
VPS39-213ENST00000570062 WDR83Q9BRX9 315 aaKnown RBP8.04□□□□□ -1.12
VPS39-213ENST00000570062 PBX4Q9BYU1 374 aa8.04□□□□□ -1.12
VPS39-213ENST00000570062 VPS11Q9H270 941 aa8.04□□□□□ -1.12
VPS39-213ENST00000570062 NSUN3Q9H649 340 aaKnown RBP8.04□□□□□ -1.12
VPS39-213ENST00000570062 TRPV4Q9HBA0 871 aa8.04□□□□□ -1.12
VPS39-213ENST00000570062 SPHK2Q9NRA0 654 aa8.04□□□□□ -1.12
VPS39-213ENST00000570062 CHRAC1Q9NRG0 131 aa8.04□□□□□ -1.12
VPS39-213ENST00000570062 C20orf96Q9NUD7 363 aaPredicted RBP8.04□□□□□ -1.12
VPS39-213ENST00000570062 GRID1Q9ULK0 1009 aa8.04□□□□□ -1.12
VPS39-213ENST00000570062 KIAA0100Q14667 2235 aaKnown RBP8.04□□□□□ -1.12
VPS39-213ENST00000570062 TMEM265A0A087WTH1 108 aa8.03□□□□□ -1.12
VPS39-213ENST00000570062 ZCWPW2A0A1B0GU75 182 aa8.03□□□□□ -1.12
VPS39-213ENST00000570062 MROH6A6NGR9 719 aa8.03□□□□□ -1.12
VPS39-213ENST00000570062 COPEO14579 308 aa8.03□□□□□ -1.12
VPS39-213ENST00000570062 HOXC11O43248 304 aaPredicted RBP8.03□□□□□ -1.12
VPS39-213ENST00000570062 MOSPD3O75425 235 aa8.03□□□□□ -1.12
VPS39-213ENST00000570062 BANF1O75531 89 aa8.03□□□□□ -1.12
VPS39-213ENST00000570062 RFPL2O75678 378 aa8.03□□□□□ -1.12
VPS39-213ENST00000570062 TMCC1O94876 653 aa8.03□□□□□ -1.12
VPS39-213ENST00000570062 FAM107AO95990 144 aa8.03□□□□□ -1.12
VPS39-213ENST00000570062 ATP5BP06576 529 aaKnown RBP8.03□□□□□ -1.12
VPS39-213ENST00000570062 APOA4P06727 396 aa8.03□□□□□ -1.12
VPS39-213ENST00000570062 SRPRAP08240 638 aaKnown RBP8.03□□□□□ -1.12
VPS39-213ENST00000570062 MMP2P08253 660 aa8.03□□□□□ -1.12
VPS39-213ENST00000570062 PSMA3P25788 255 aa8.03□□□□□ -1.12
VPS39-213ENST00000570062 CRABP2P29373 138 aa8.03□□□□□ -1.12
VPS39-213ENST00000570062 CRHR1P34998 444 aa8.03□□□□□ -1.12
VPS39-213ENST00000570062 CSKP41240 450 aa8.03□□□□□ -1.12
VPS39-213ENST00000570062 RECQLP46063 649 aaPredicted RBP8.03□□□□□ -1.12
VPS39-213ENST00000570062 GRIA4P48058 902 aa8.03□□□□□ -1.12
VPS39-213ENST00000570062 NRIP1P48552 1158 aa8.03□□□□□ -1.12
VPS39-213ENST00000570062 SERPINB8P50452 374 aa8.03□□□□□ -1.12
VPS39-213ENST00000570062 SCNN1BP51168 640 aa8.03□□□□□ -1.12
VPS39-213ENST00000570062 KPNA2P52292 529 aaKnown RBP8.03□□□□□ -1.12
VPS39-213ENST00000570062 PRAMEP78395 509 aa8.03□□□□□ -1.12
VPS39-213ENST00000570062 ARF5P84085 180 aa8.03□□□□□ -1.12
VPS39-213ENST00000570062 DSC2Q02487 901 aa8.03□□□□□ -1.12
VPS39-213ENST00000570062 KCNC3Q14003 757 aa8.03□□□□□ -1.12
VPS39-213ENST00000570062 CYTH1Q15438 398 aa8.03□□□□□ -1.12
VPS39-213ENST00000570062 PLEKHG6Q3KR16 790 aa8.03□□□□□ -1.12
VPS39-213ENST00000570062 ATAT1Q5SQI0 421 aa8.03□□□□□ -1.12
VPS39-213ENST00000570062 CERCAMQ5T4B2 595 aa8.03□□□□□ -1.12
VPS39-213ENST00000570062 TSTD2Q5T7W7 516 aa8.03□□□□□ -1.12
VPS39-213ENST00000570062 TEDDM1Q5T9Z0 273 aa8.03□□□□□ -1.12
VPS39-213ENST00000570062 NCEH1Q6PIU2 408 aa8.03□□□□□ -1.12
VPS39-213ENST00000570062 PACS1Q6VY07 963 aa8.03□□□□□ -1.12
VPS39-213ENST00000570062 KYAT3Q6YP21 454 aaKnown RBP8.03□□□□□ -1.12
VPS39-213ENST00000570062 RGS9BPQ6ZS82 235 aa8.03□□□□□ -1.12
VPS39-213ENST00000570062 CPLX4Q7Z7G2 160 aa8.03□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 64.6 ms