RNA–Protein interactions for RNA: ENST00000568497.6

CLN3-235, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 758 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-235ENST00000568497 GBE1Q04446 702 aa14.08□□□□□ -0.16
CLN3-235ENST00000568497 VAC14Q08AM6 782 aa14.08□□□□□ -0.16
CLN3-235ENST00000568497 CNTN1Q12860 1018 aa14.08□□□□□ -0.16
CLN3-235ENST00000568497 SERINC3Q13530 473 aa14.08□□□□□ -0.16
CLN3-235ENST00000568497 BOLA3Q53S33 107 aa14.08□□□□□ -0.16
CLN3-235ENST00000568497 KIAA1328Q86T90 577 aa14.08□□□□□ -0.16
CLN3-235ENST00000568497 CCDC170Q8IYT3 715 aa14.08□□□□□ -0.16
CLN3-235ENST00000568497 TPCN2Q8NHX9 752 aa14.08□□□□□ -0.16
CLN3-235ENST00000568497 OR8D1Q8WZ84 308 aa14.08□□□□□ -0.16
CLN3-235ENST00000568497 ELF4Q99607 663 aaPredicted RBP14.08□□□□□ -0.16
CLN3-235ENST00000568497 MAGEH1Q9H213 219 aa14.08□□□□□ -0.16
CLN3-235ENST00000568497 ZDHHC6Q9H6R6 413 aa14.08□□□□□ -0.16
CLN3-235ENST00000568497 LHX3Q9UBR4 397 aa14.08□□□□□ -0.16
CLN3-235ENST00000568497 PACSIN2Q9UNF0 486 aaPredicted RBP14.08□□□□□ -0.16
CLN3-235ENST00000568497 ALG6Q9Y672 507 aa14.08□□□□□ -0.16
CLN3-235ENST00000568497 TARSL2A2RTX5 802 aaKnown RBP14.07□□□□□ -0.16
CLN3-235ENST00000568497 C3orf70A6NLC5 250 aaPredicted RBP14.07□□□□□ -0.16
CLN3-235ENST00000568497 KPNA3O00505 521 aaPredicted RBP14.07□□□□□ -0.16
CLN3-235ENST00000568497 WNT9AO14904 365 aa14.07□□□□□ -0.16
CLN3-235ENST00000568497 FGF10O15520 208 aaPredicted RBP14.07□□□□□ -0.16
CLN3-235ENST00000568497 SPOPO43791 374 aa14.07□□□□□ -0.16
CLN3-235ENST00000568497 LEFTY1O75610 366 aa14.07□□□□□ -0.16
CLN3-235ENST00000568497 PIGNO95427 931 aa14.07□□□□□ -0.16
CLN3-235ENST00000568497 C7P10643 843 aa14.07□□□□□ -0.16
CLN3-235ENST00000568497 KDELR1P24390 212 aa14.07□□□□□ -0.16
CLN3-235ENST00000568497 MAT2AP31153 395 aaKnown RBP14.07□□□□□ -0.16
CLN3-235ENST00000568497 CHRNA3P32297 505 aa14.07□□□□□ -0.16
CLN3-235ENST00000568497 ARL4AP40617 200 aa14.07□□□□□ -0.16
CLN3-235ENST00000568497 CCNHP51946 323 aaPredicted RBP14.07□□□□□ -0.16
CLN3-235ENST00000568497 AIF1P55008 147 aa14.07□□□□□ -0.16
CLN3-235ENST00000568497 PPP2CBP62714 309 aa14.07□□□□□ -0.16
CLN3-235ENST00000568497 PPP2CAP67775 309 aa14.07□□□□□ -0.16
CLN3-235ENST00000568497 ADCY2Q08462 1091 aa14.07□□□□□ -0.16
CLN3-235ENST00000568497 SLC10A2Q12908 348 aaPredicted RBP14.07□□□□□ -0.16
CLN3-235ENST00000568497 HADHQ16836 314 aaKnown RBP14.07□□□□□ -0.16
CLN3-235ENST00000568497 ANKRD20A8PQ5CZ79 823 aa14.07□□□□□ -0.16
CLN3-235ENST00000568497 KIAA1614Q5VZ46 1190 aa14.07□□□□□ -0.16
CLN3-235ENST00000568497 AFMIDQ63HM1 303 aa14.07□□□□□ -0.16
CLN3-235ENST00000568497 KAZNQ674X7 775 aa14.07□□□□□ -0.16
CLN3-235ENST00000568497 NCBP2-AS2Q69YL0 99 aa14.07□□□□□ -0.16
CLN3-235ENST00000568497 MFSD7Q6UXD7 560 aa14.07□□□□□ -0.16
CLN3-235ENST00000568497 ZNF783Q6ZMS7 281 aa14.07□□□□□ -0.16
CLN3-235ENST00000568497 RHOT2Q8IXI1 618 aa14.07□□□□□ -0.16
CLN3-235ENST00000568497 UMODL1-AS1Q8N2C9 162 aa14.07□□□□□ -0.16
CLN3-235ENST00000568497 TEKT4Q8WW24 435 aa14.07□□□□□ -0.16
CLN3-235ENST00000568497 HAUS1Q96CS2 278 aa14.07□□□□□ -0.16
CLN3-235ENST00000568497 ZNF578Q96N58 590 aaPredicted RBP14.07□□□□□ -0.16
CLN3-235ENST00000568497 MYOCQ99972 504 aa14.07□□□□□ -0.16
CLN3-235ENST00000568497 OMDQ99983 421 aa14.07□□□□□ -0.16
CLN3-235ENST00000568497 HERPUD2Q9BSE4 406 aa14.07□□□□□ -0.16
CLN3-235ENST00000568497 ANP32EQ9BTT0 268 aa14.07□□□□□ -0.16
CLN3-235ENST00000568497 BTBD1Q9H0C5 482 aa14.07□□□□□ -0.16
CLN3-235ENST00000568497 EBF2Q9HAK2 575 aa14.07□□□□□ -0.16
CLN3-235ENST00000568497 PDFQ9HBH1 243 aa14.07□□□□□ -0.16
CLN3-235ENST00000568497 IGSF5Q9NSI5 407 aa14.07□□□□□ -0.16
CLN3-235ENST00000568497 IMPACTQ9P2X3 320 aa14.07□□□□□ -0.16
CLN3-235ENST00000568497 SAE1Q9UBE0 346 aaPredicted RBP14.07□□□□□ -0.16
CLN3-235ENST00000568497 HECAQ9UBI9 543 aaPredicted RBP14.07□□□□□ -0.16
CLN3-235ENST00000568497 GGT7Q9UJ14 662 aa14.07□□□□□ -0.16
CLN3-235ENST00000568497 ITM2BQ9Y287 266 aa14.07□□□□□ -0.16
CLN3-235ENST00000568497 CA5BQ9Y2D0 317 aa14.07□□□□□ -0.16
CLN3-235ENST00000568497 WASF2Q9Y6W5 498 aa14.07□□□□□ -0.16
CLN3-235ENST00000568497 GRID2IPA4D2P6 1211 aa14.06□□□□□ -0.16
CLN3-235ENST00000568497 KRIT1O00522 736 aa14.06□□□□□ -0.16
CLN3-235ENST00000568497 MPOP05164 745 aa14.06□□□□□ -0.16
CLN3-235ENST00000568497 MAN1A1P33908 653 aa14.06□□□□□ -0.16
CLN3-235ENST00000568497 VAV2P52735 878 aa14.06□□□□□ -0.16
CLN3-235ENST00000568497 MAXP61244 160 aa14.06□□□□□ -0.16
CLN3-235ENST00000568497 ILKQ13418 452 aa14.06□□□□□ -0.16
CLN3-235ENST00000568497 PTPRRQ15256 657 aa14.06□□□□□ -0.16
CLN3-235ENST00000568497 CARD16Q5EG05 197 aa14.06□□□□□ -0.16
CLN3-235ENST00000568497 RETSATQ6NUM9 610 aa14.06□□□□□ -0.16
CLN3-235ENST00000568497 NCEH1Q6PIU2 408 aa14.06□□□□□ -0.16
CLN3-235ENST00000568497 TMCO3Q6UWJ1 677 aa14.06□□□□□ -0.16
CLN3-235ENST00000568497 TSEN2Q8NCE0 465 aaKnown RBP14.06□□□□□ -0.16
CLN3-235ENST00000568497 OR14C36Q8NHC7 312 aa14.06□□□□□ -0.16
CLN3-235ENST00000568497 SKA1Q96BD8 255 aa14.06□□□□□ -0.16
CLN3-235ENST00000568497 C10orf88Q9H8K7 445 aa14.06□□□□□ -0.16
CLN3-235ENST00000568497 SP110Q9HB58 689 aa14.06□□□□□ -0.16
CLN3-235ENST00000568497 UBA2Q9UBT2 640 aaPredicted RBP14.06□□□□□ -0.16
CLN3-235ENST00000568497 IPO11Q9UI26 975 aaKnown RBP14.06□□□□□ -0.16
CLN3-235ENST00000568497 INTUQ9ULD6 942 aa14.06□□□□□ -0.16
CLN3-235ENST00000568497 PPM1HQ9ULR3 514 aa14.06□□□□□ -0.16
CLN3-235ENST00000568497 HPCAL4Q9UM19 191 aa14.06□□□□□ -0.16
CLN3-235ENST00000568497 MCF2LO15068 1137 aa14.05□□□□□ -0.16
CLN3-235ENST00000568497 PRAMEF11O60813 436 aa14.05□□□□□ -0.16
CLN3-235ENST00000568497 FTCDO95954 541 aa14.05□□□□□ -0.16
CLN3-235ENST00000568497 UGT2B4P06133 528 aa14.05□□□□□ -0.16
CLN3-235ENST00000568497 NDST2P52849 883 aa14.05□□□□□ -0.16
CLN3-235ENST00000568497 TAS2R38P59533 333 aa14.05□□□□□ -0.16
CLN3-235ENST00000568497 RHOAP61586 193 aa14.05□□□□□ -0.16
CLN3-235ENST00000568497 RACK1P63244 317 aaKnown RBP14.05□□□□□ -0.16
CLN3-235ENST00000568497 GABREP78334 506 aa14.05□□□□□ -0.16
CLN3-235ENST00000568497 CCZ1BP86790 482 aa14.05□□□□□ -0.16
CLN3-235ENST00000568497 CCZ1P86791 482 aaPredicted RBP14.05□□□□□ -0.16
CLN3-235ENST00000568497 SLC10A7Q0GE19 358 aa14.05□□□□□ -0.16
CLN3-235ENST00000568497 ELAVL3Q14576 367 aaKnown RBP14.05□□□□□ -0.16
CLN3-235ENST00000568497 KCTD19Q17RG1 926 aaPredicted RBP14.05□□□□□ -0.16
CLN3-235ENST00000568497 PARP15Q460N3 678 aa14.05□□□□□ -0.16
CLN3-235ENST00000568497 RFX6Q8HWS3 928 aa14.05□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms