RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 MPHOSPH6Q99547 160 aaKnown RBP2.97□□□□□ -1.93
VPS35-207ENST00000568191 TWSG1Q9GZX9 223 aa2.97□□□□□ -1.93
VPS35-207ENST00000568191 ALKBH4Q9NXW9 302 aa2.97□□□□□ -1.93
VPS35-207ENST00000568191 NDRG3Q9UGV2 375 aa2.97□□□□□ -1.93
VPS35-207ENST00000568191 SRP68Q9UHB9 627 aaKnown RBP2.97□□□□□ -1.93
VPS35-207ENST00000568191 GDAQ9Y2T3 454 aa2.97□□□□□ -1.93
VPS35-207ENST00000568191 PCDHGB5Q9Y5G0 923 aa2.97□□□□□ -1.93
VPS35-207ENST00000568191 FAM172BPA6NC97 362 aa2.96□□□□□ -1.94
VPS35-207ENST00000568191 PRR23AA6NEV1 266 aa2.96□□□□□ -1.94
VPS35-207ENST00000568191 IPO5O00410 1097 aaKnown RBP2.96□□□□□ -1.94
VPS35-207ENST00000568191 IRAK2O43187 625 aa2.96□□□□□ -1.94
VPS35-207ENST00000568191 FAM155BO75949 473 aa2.96□□□□□ -1.94
VPS35-207ENST00000568191 PMS2P2O95744 297 aa2.96□□□□□ -1.94
VPS35-207ENST00000568191 PTPN2P17706 415 aa2.96□□□□□ -1.94
VPS35-207ENST00000568191 RXRAP19793 462 aa2.96□□□□□ -1.94
VPS35-207ENST00000568191 MCM3P25205 808 aa2.96□□□□□ -1.94
VPS35-207ENST00000568191 STX2P32856 288 aa2.96□□□□□ -1.94
VPS35-207ENST00000568191 PTPN9P43378 593 aa2.96□□□□□ -1.94
VPS35-207ENST00000568191 PAPOLAP51003 745 aaKnown RBP2.96□□□□□ -1.94
VPS35-207ENST00000568191 FOXD4Q12950 439 aaPredicted RBP2.96□□□□□ -1.94
VPS35-207ENST00000568191 UBE4AQ14139 1066 aa2.96□□□□□ -1.94
VPS35-207ENST00000568191 SLC18A3Q16572 532 aa2.96□□□□□ -1.94
VPS35-207ENST00000568191 SH2D4BQ5SQS7 431 aa2.96□□□□□ -1.94
VPS35-207ENST00000568191 CEP85LQ5SZL2 805 aa2.96□□□□□ -1.94
VPS35-207ENST00000568191 FBXL22Q6P050 247 aa2.96□□□□□ -1.94
VPS35-207ENST00000568191 CCDC129Q6ZRS4 1044 aa2.96□□□□□ -1.94
VPS35-207ENST00000568191 C9orf139Q6ZV77 190 aa2.96□□□□□ -1.94
VPS35-207ENST00000568191 TMPRSS12Q86WS5 348 aa2.96□□□□□ -1.94
VPS35-207ENST00000568191 CPXM2Q8N436 756 aa2.96□□□□□ -1.94
VPS35-207ENST00000568191 METTL27Q8N6F8 245 aaPredicted RBP2.96□□□□□ -1.94
VPS35-207ENST00000568191 SAMD3Q8N6K7 520 aa2.96□□□□□ -1.94
VPS35-207ENST00000568191 ENAHQ8N8S7 591 aaPredicted RBP2.96□□□□□ -1.94
VPS35-207ENST00000568191 USP38Q8NB14 1042 aa2.96□□□□□ -1.94
VPS35-207ENST00000568191 CNOT9Q92600 299 aaKnown RBP2.96□□□□□ -1.94
VPS35-207ENST00000568191 RNFT2Q96EX2 444 aa2.96□□□□□ -1.94
VPS35-207ENST00000568191 ZC3HAV1LQ96H79 300 aaKnown RBP2.96□□□□□ -1.94
VPS35-207ENST00000568191 PKP4Q99569 1192 aa2.96□□□□□ -1.94
VPS35-207ENST00000568191 CYSLTR2Q9NS75 346 aa2.96□□□□□ -1.94
VPS35-207ENST00000568191 ZNF224Q9NZL3 707 aa2.96□□□□□ -1.94
VPS35-207ENST00000568191 SLCO3A1Q9UIG8 710 aa2.96□□□□□ -1.94
VPS35-207ENST00000568191 SIX4Q9UIU6 781 aa2.96□□□□□ -1.94
VPS35-207ENST00000568191 POU2F3Q9UKI9 436 aa2.96□□□□□ -1.94
VPS35-207ENST00000568191 C17orf113A0A1B0GUU1 675 aa2.95□□□□□ -1.94
VPS35-207ENST00000568191 C17orf100A8MU93 164 aa2.95□□□□□ -1.94
VPS35-207ENST00000568191 PRAC2D3DTV9 90 aa2.95□□□□□ -1.94
VPS35-207ENST00000568191 FAM72CH0Y354 149 aa2.95□□□□□ -1.94
VPS35-207ENST00000568191 STX16-NPEPL1H3BU86 382 aa2.95□□□□□ -1.94
VPS35-207ENST00000568191 TULP2O00295 520 aa2.95□□□□□ -1.94
VPS35-207ENST00000568191 STX16O14662 325 aa2.95□□□□□ -1.94
VPS35-207ENST00000568191 WNT9BO14905 357 aa2.95□□□□□ -1.94
VPS35-207ENST00000568191 DHX16O60231 1041 aaKnown RBP2.95□□□□□ -1.94
VPS35-207ENST00000568191 FGF17O60258 216 aa2.95□□□□□ -1.94
VPS35-207ENST00000568191 TSPAN3O60637 253 aa2.95□□□□□ -1.94
VPS35-207ENST00000568191 CRYAAP02489 173 aa2.95□□□□□ -1.94
VPS35-207ENST00000568191 RNF224P0DH78 156 aa2.95□□□□□ -1.94
VPS35-207ENST00000568191 CETPP11597 493 aa2.95□□□□□ -1.94
VPS35-207ENST00000568191 SRCP12931 536 aa2.95□□□□□ -1.94
VPS35-207ENST00000568191 SLC2A4P14672 509 aa2.95□□□□□ -1.94
VPS35-207ENST00000568191 KCNA5P22460 613 aa2.95□□□□□ -1.94
VPS35-207ENST00000568191 TTKP33981 857 aa2.95□□□□□ -1.94
VPS35-207ENST00000568191 NLRP5P59047 1200 aa2.95□□□□□ -1.94
VPS35-207ENST00000568191 AMZ1Q400G9 498 aa2.95□□□□□ -1.94
VPS35-207ENST00000568191 ATP13A5Q4VNC0 1218 aa2.95□□□□□ -1.94
VPS35-207ENST00000568191 PPP6R3Q5H9R7 873 aaPredicted RBP2.95□□□□□ -1.94
VPS35-207ENST00000568191 FAM72AQ5TYM5 149 aa2.95□□□□□ -1.94
VPS35-207ENST00000568191 IRAK1BP1Q5VVH5 260 aa2.95□□□□□ -1.94
VPS35-207ENST00000568191 FAM72DQ6L9T8 149 aa2.95□□□□□ -1.94
VPS35-207ENST00000568191 ADAM5Q6NVV9 412 aa2.95□□□□□ -1.94
VPS35-207ENST00000568191 CCDC174Q6PII3 467 aa2.95□□□□□ -1.94
VPS35-207ENST00000568191 TBC1D26Q86UD7 250 aa2.95□□□□□ -1.94
VPS35-207ENST00000568191 FAM72BQ86X60 149 aa2.95□□□□□ -1.94
VPS35-207ENST00000568191 SPICE1Q8N0Z3 855 aa2.95□□□□□ -1.94
VPS35-207ENST00000568191 NEXN-AS1Q8NBZ9 246 aa2.95□□□□□ -1.94
VPS35-207ENST00000568191 SPATA20Q8TB22 786 aa2.95□□□□□ -1.94
VPS35-207ENST00000568191 TMEM255BQ8WV15 326 aa2.95□□□□□ -1.94
VPS35-207ENST00000568191 SORCS1Q8WY21 1168 aa2.95□□□□□ -1.94
VPS35-207ENST00000568191 FBXO17Q96EF6 278 aa2.95□□□□□ -1.94
VPS35-207ENST00000568191 C3orf30Q96M34 536 aa2.95□□□□□ -1.94
VPS35-207ENST00000568191 KXD1Q9BQD3 176 aa2.95□□□□□ -1.94
VPS35-207ENST00000568191 HERC2P3Q9BVR0 1158 aa2.95□□□□□ -1.94
VPS35-207ENST00000568191 RASSF1Q9NS23 344 aa2.95□□□□□ -1.94
VPS35-207ENST00000568191 GRHPRQ9UBQ7 328 aa2.95□□□□□ -1.94
VPS35-207ENST00000568191 CYSRT1A8MQ03 144 aa2.94□□□□□ -1.94
VPS35-207ENST00000568191 AKR1B15C9JRZ8 316 aaPredicted RBP2.94□□□□□ -1.94
VPS35-207ENST00000568191 PEX12O00623 359 aa2.94□□□□□ -1.94
VPS35-207ENST00000568191 HSPA12AO43301 675 aa2.94□□□□□ -1.94
VPS35-207ENST00000568191 CEP104O60308 925 aa2.94□□□□□ -1.94
VPS35-207ENST00000568191 ZIC3O60481 467 aa2.94□□□□□ -1.94
VPS35-207ENST00000568191 RGS11O94810 467 aa2.94□□□□□ -1.94
VPS35-207ENST00000568191 HMGB1P09429 215 aaKnown RBP2.94□□□□□ -1.94
VPS35-207ENST00000568191 CHATP28329 748 aa2.94□□□□□ -1.94
VPS35-207ENST00000568191 SSTR2P30874 369 aa2.94□□□□□ -1.94
VPS35-207ENST00000568191 TERF1P54274 439 aa2.94□□□□□ -1.94
VPS35-207ENST00000568191 NR1H2P55055 460 aa2.94□□□□□ -1.94
VPS35-207ENST00000568191 RHBDL3P58872 404 aa2.94□□□□□ -1.94
VPS35-207ENST00000568191 DMP1Q13316 513 aaPredicted RBP2.94□□□□□ -1.94
VPS35-207ENST00000568191 NAA25Q14CX7 972 aa2.94□□□□□ -1.94
VPS35-207ENST00000568191 MRGPRG-AS1Q2M3A8 158 aa2.94□□□□□ -1.94
VPS35-207ENST00000568191 CCNI2Q6ZMN8 369 aaPredicted RBP2.94□□□□□ -1.94
VPS35-207ENST00000568191 ZSCAN2Q7Z7L9 614 aaPredicted RBP2.94□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 55.2 ms