RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 CCDC172P0C7W6 258 aa17.29■□□□□ 0.36
CLN3-216ENST00000565316 FERP16591 822 aa17.29■□□□□ 0.36
CLN3-216ENST00000565316 EIF4A3P38919 411 aaKnown RBP17.29■□□□□ 0.36
CLN3-216ENST00000565316 PEX5P50542 639 aa17.29■□□□□ 0.36
CLN3-216ENST00000565316 ADKP55263 362 aaKnown RBP17.29■□□□□ 0.36
CLN3-216ENST00000565316 PCBP4P57723 403 aaKnown RBP17.29■□□□□ 0.36
CLN3-216ENST00000565316 ELP6Q0PNE2 266 aa17.29■□□□□ 0.36
CLN3-216ENST00000565316 GRM3Q14832 879 aa17.29■□□□□ 0.36
CLN3-216ENST00000565316 AGERQ15109 404 aa17.29■□□□□ 0.36
CLN3-216ENST00000565316 STX1AQ16623 288 aa17.29■□□□□ 0.36
CLN3-216ENST00000565316 PRRT3Q5FWE3 981 aa17.29■□□□□ 0.36
CLN3-216ENST00000565316 C6orf132Q5T0Z8 1188 aa17.29■□□□□ 0.36
CLN3-216ENST00000565316 DCUN1D2Q6PH85 259 aa17.29■□□□□ 0.36
CLN3-216ENST00000565316 SASS6Q6UVJ0 657 aa17.29■□□□□ 0.36
CLN3-216ENST00000565316 DNAAF5Q86Y56 855 aa17.29■□□□□ 0.36
CLN3-216ENST00000565316 SLC35F3Q8IY50 421 aa17.29■□□□□ 0.36
CLN3-216ENST00000565316 ZNF641Q96N77 438 aaPredicted RBP17.29■□□□□ 0.36
CLN3-216ENST00000565316 WRAP53Q9BUR4 548 aaKnown RBP17.29■□□□□ 0.36
CLN3-216ENST00000565316 SLC13A1Q9BZW2 595 aa17.29■□□□□ 0.36
CLN3-216ENST00000565316 CLPBQ9H078 707 aa17.29■□□□□ 0.36
CLN3-216ENST00000565316 SUV39H2Q9H5I1 410 aa17.29■□□□□ 0.36
CLN3-216ENST00000565316 ASCL3Q9NQ33 180 aa17.29■□□□□ 0.36
CLN3-216ENST00000565316 UBA2Q9UBT2 640 aaPredicted RBP17.29■□□□□ 0.36
CLN3-216ENST00000565316 MYO6Q9UM54 1294 aa17.29■□□□□ 0.36
CLN3-216ENST00000565316 COL27A1Q8IZC6 1860 aaPredicted RBP17.29■□□□□ 0.36
CLN3-216ENST00000565316 A0A1W2PNU3 283 aaPredicted RBP17.28■□□□□ 0.36
CLN3-216ENST00000565316 TMEM110-MUSTN1A8MSY1 372 aa17.28■□□□□ 0.36
CLN3-216ENST00000565316 EIF3CLB5ME19 914 aaKnown RBP17.28■□□□□ 0.36
CLN3-216ENST00000565316 YY2O15391 372 aa17.28■□□□□ 0.36
CLN3-216ENST00000565316 PRAMEF11O60813 436 aa17.28■□□□□ 0.36
CLN3-216ENST00000565316 TCEA3O75764 348 aa17.28■□□□□ 0.36
CLN3-216ENST00000565316 PIGNO95427 931 aa17.28■□□□□ 0.36
CLN3-216ENST00000565316 TSHRP16473 764 aa17.28■□□□□ 0.36
CLN3-216ENST00000565316 CDK11BP21127 795 aaKnown RBP17.28■□□□□ 0.36
CLN3-216ENST00000565316 RPIAP49247 311 aa17.28■□□□□ 0.36
CLN3-216ENST00000565316 NDST2P52849 883 aa17.28■□□□□ 0.36
CLN3-216ENST00000565316 MAMLD1Q13495 774 aa17.28■□□□□ 0.36
CLN3-216ENST00000565316 C1orf61Q13536 156 aa17.28■□□□□ 0.36
CLN3-216ENST00000565316 IRF4Q15306 451 aa17.28■□□□□ 0.36
CLN3-216ENST00000565316 UGP2Q16851 508 aa17.28■□□□□ 0.36
CLN3-216ENST00000565316 WSCD2Q2TBF2 565 aa17.28■□□□□ 0.36
CLN3-216ENST00000565316 PERM1Q5SV97 790 aa17.28■□□□□ 0.36
CLN3-216ENST00000565316 GPR155Q7Z3F1 870 aa17.28■□□□□ 0.36
CLN3-216ENST00000565316 GLMNQ92990 594 aa17.28■□□□□ 0.36
CLN3-216ENST00000565316 NAT6Q93015 286 aa17.28■□□□□ 0.36
CLN3-216ENST00000565316 EXOC2Q96KP1 924 aa17.28■□□□□ 0.36
CLN3-216ENST00000565316 EIF3CQ99613 913 aaKnown RBP17.28■□□□□ 0.36
CLN3-216ENST00000565316 PCDH12Q9NPG4 1184 aa17.28■□□□□ 0.36
CLN3-216ENST00000565316 TAS2R14Q9NYV8 317 aa17.28■□□□□ 0.36
CLN3-216ENST00000565316 ATMQ13315 3056 aa17.28■□□□□ 0.36
CLN3-216ENST00000565316 TEX51A0A1B0GUA7 166 aa17.27■□□□□ 0.36
CLN3-216ENST00000565316 J3KR12 359 aa17.27■□□□□ 0.36
CLN3-216ENST00000565316 MUSKO15146 869 aa17.27■□□□□ 0.36
CLN3-216ENST00000565316 BUB1BO60566 1050 aaPredicted RBP17.27■□□□□ 0.36
CLN3-216ENST00000565316 ANXA6P08133 673 aa17.27■□□□□ 0.36
CLN3-216ENST00000565316 XPAP23025 273 aaPredicted RBP17.27■□□□□ 0.36
CLN3-216ENST00000565316 CSNK1DP48730 415 aa17.27■□□□□ 0.36
CLN3-216ENST00000565316 TPI1P60174 286 aa17.27■□□□□ 0.36
CLN3-216ENST00000565316 PPARDQ03181 441 aa17.27■□□□□ 0.36
CLN3-216ENST00000565316 LRRC14Q15048 493 aa17.27■□□□□ 0.36
CLN3-216ENST00000565316 FAXCQ5TGI0 409 aa17.27■□□□□ 0.36
CLN3-216ENST00000565316 AFMIDQ63HM1 303 aa17.27■□□□□ 0.36
CLN3-216ENST00000565316 PLEKHA7Q6IQ23 1121 aa17.27■□□□□ 0.36
CLN3-216ENST00000565316 PPP1R2P3Q6NXS1 205 aa17.27■□□□□ 0.36
CLN3-216ENST00000565316 BRAT1Q6PJG6 821 aa17.27■□□□□ 0.36
CLN3-216ENST00000565316 LVRNQ6Q4G3 990 aa17.27■□□□□ 0.36
CLN3-216ENST00000565316 RBM44Q6ZP01 1051 aaKnown RBP17.27■□□□□ 0.36
CLN3-216ENST00000565316 FSTL5Q8N475 847 aaPredicted RBP17.27■□□□□ 0.36
CLN3-216ENST00000565316 WDR48Q8TAF3 677 aa17.27■□□□□ 0.36
CLN3-216ENST00000565316 SLC39A7Q92504 469 aa17.27■□□□□ 0.36
CLN3-216ENST00000565316 TUBGCP5Q96RT8 1024 aa17.27■□□□□ 0.36
CLN3-216ENST00000565316 LGMNQ99538 433 aa17.27■□□□□ 0.36
CLN3-216ENST00000565316 NCAPGQ9BPX3 1015 aa17.27■□□□□ 0.36
CLN3-216ENST00000565316 ENTPD2Q9Y5L3 495 aa17.27■□□□□ 0.36
CLN3-216ENST00000565316 ATP1A3P13637 1013 aa17.26■□□□□ 0.35
CLN3-216ENST00000565316 C6P13671 934 aa17.26■□□□□ 0.35
CLN3-216ENST00000565316 MMP12P39900 470 aa17.26■□□□□ 0.35
CLN3-216ENST00000565316 BLKP51451 505 aa17.26■□□□□ 0.35
CLN3-216ENST00000565316 HK3P52790 923 aa17.26■□□□□ 0.35
CLN3-216ENST00000565316 SDR16C5Q8N3Y7 309 aa17.26■□□□□ 0.35
CLN3-216ENST00000565316 ARFGAP1Q8N6T3 406 aa17.26■□□□□ 0.35
CLN3-216ENST00000565316 ATXN7L3BQ96GX2 97 aa17.26■□□□□ 0.35
CLN3-216ENST00000565316 PRR11Q96HE9 360 aaPredicted RBP17.26■□□□□ 0.35
CLN3-216ENST00000565316 SLC46A1Q96NT5 459 aa17.26■□□□□ 0.35
CLN3-216ENST00000565316 SLC39A8Q9C0K1 460 aa17.26■□□□□ 0.35
CLN3-216ENST00000565316 THSD1Q9NS62 852 aa17.26■□□□□ 0.35
CLN3-216ENST00000565316 PARVAQ9NVD7 372 aa17.26■□□□□ 0.35
CLN3-216ENST00000565316 GPATCH2LQ9NWQ4 482 aa17.26■□□□□ 0.35
CLN3-216ENST00000565316 PADI4Q9UM07 663 aa17.26■□□□□ 0.35
CLN3-216ENST00000565316 AP4E1Q9UPM8 1137 aa17.26■□□□□ 0.35
CLN3-216ENST00000565316 SATB2Q9UPW6 733 aa17.26■□□□□ 0.35
CLN3-216ENST00000565316 SSUH2Q9Y2M2 353 aa17.26■□□□□ 0.35
CLN3-216ENST00000565316 COQ6Q9Y2Z9 468 aa17.26■□□□□ 0.35
CLN3-216ENST00000565316 PCDHGA8Q9Y5G5 932 aa17.26■□□□□ 0.35
CLN3-216ENST00000565316 SHROOM3Q8TF72 1996 aa17.26■□□□□ 0.35
CLN3-216ENST00000565316 RP1P56715 2156 aa17.26■□□□□ 0.35
CLN3-216ENST00000565316 ZNF462Q96JM2 2506 aa17.25■□□□□ 0.35
CLN3-216ENST00000565316 CFAP69A5D8W1 941 aa17.25■□□□□ 0.35
CLN3-216ENST00000565316 TMEM191CA6NGB0 347 aa17.25■□□□□ 0.35
CLN3-216ENST00000565316 C1QL1O75973 258 aa17.25■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms