RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 A0A1B0GVT2 93 aa9.3□□□□□ -0.92
VPS35-206ENST00000565228 CCDC66A2RUB6 948 aa9.3□□□□□ -0.92
VPS35-206ENST00000565228 TBC1D3FA6NER0 549 aaPredicted RBP9.3□□□□□ -0.92
VPS35-206ENST00000565228 IGLON5A6NGN9 336 aa9.3□□□□□ -0.92
VPS35-206ENST00000565228 MEI4A8MW99 385 aa9.3□□□□□ -0.92
VPS35-206ENST00000565228 TBC1D3LB9A6J9 549 aa9.3□□□□□ -0.92
VPS35-206ENST00000565228 F5H423 210 aaPredicted RBP9.3□□□□□ -0.92
VPS35-206ENST00000565228 ZBTB24O43167 697 aaPredicted RBP9.3□□□□□ -0.92
VPS35-206ENST00000565228 SLC7A4O43246 635 aa9.3□□□□□ -0.92
VPS35-206ENST00000565228 MMP20O60882 483 aa9.3□□□□□ -0.92
VPS35-206ENST00000565228 CCDC175P0C221 793 aa9.3□□□□□ -0.92
VPS35-206ENST00000565228 TBC1D3HP0C7X1 549 aa9.3□□□□□ -0.92
VPS35-206ENST00000565228 CCNB1P14635 433 aa9.3□□□□□ -0.92
VPS35-206ENST00000565228 LHCGRP22888 699 aa9.3□□□□□ -0.92
VPS35-206ENST00000565228 RBL1P28749 1068 aa9.3□□□□□ -0.92
VPS35-206ENST00000565228 NEK3P51956 506 aa9.3□□□□□ -0.92
VPS35-206ENST00000565228 RWDD2BP57060 319 aa9.3□□□□□ -0.92
VPS35-206ENST00000565228 CLDN2P57739 230 aa9.3□□□□□ -0.92
VPS35-206ENST00000565228 OTUD4Q01804 1114 aaKnown RBP9.3□□□□□ -0.92
VPS35-206ENST00000565228 OLIG2Q13516 323 aa9.3□□□□□ -0.92
VPS35-206ENST00000565228 BYSLQ13895 437 aaKnown RBP9.3□□□□□ -0.92
VPS35-206ENST00000565228 HNRNPDQ14103 355 aaKnown RBP9.3□□□□□ -0.92
VPS35-206ENST00000565228 RFTN1Q14699 578 aaPredicted RBP9.3□□□□□ -0.92
VPS35-206ENST00000565228 NOMO1Q15155 1222 aa9.3□□□□□ -0.92
VPS35-206ENST00000565228 SHBQ15464 509 aa9.3□□□□□ -0.92
VPS35-206ENST00000565228 TRIM61Q5EBN2 209 aa9.3□□□□□ -0.92
VPS35-206ENST00000565228 MARC1Q5VT66 337 aa9.3□□□□□ -0.92
VPS35-206ENST00000565228 FAM46CQ5VWP2 391 aa9.3□□□□□ -0.92
VPS35-206ENST00000565228 TBC1D3GQ6DHY5 549 aa9.3□□□□□ -0.92
VPS35-206ENST00000565228 TBC1D3CQ6IPX1 549 aa9.3□□□□□ -0.92
VPS35-206ENST00000565228 SLC23A3Q6PIS1 610 aa9.3□□□□□ -0.92
VPS35-206ENST00000565228 GCNT7Q6ZNI0 430 aa9.3□□□□□ -0.92
VPS35-206ENST00000565228 PEX26Q7Z412 305 aa9.3□□□□□ -0.92
VPS35-206ENST00000565228 PRUNE1Q86TP1 453 aa9.3□□□□□ -0.92
VPS35-206ENST00000565228 C11orf74Q86VG3 221 aa9.3□□□□□ -0.92
VPS35-206ENST00000565228 ZC3H18Q86VM9 953 aaKnown RBP9.3□□□□□ -0.92
VPS35-206ENST00000565228 TRIM69Q86WT6 500 aa9.3□□□□□ -0.92
VPS35-206ENST00000565228 TBC1D3Q8IZP1 549 aaPredicted RBP9.3□□□□□ -0.92
VPS35-206ENST00000565228 CBARPQ8N350 705 aaPredicted RBP9.3□□□□□ -0.92
VPS35-206ENST00000565228 TMEM145Q8NBT3 493 aa9.3□□□□□ -0.92
VPS35-206ENST00000565228 SPATA22Q8NHS9 363 aa9.3□□□□□ -0.92
VPS35-206ENST00000565228 ACTL9Q8TC94 416 aa9.3□□□□□ -0.92
VPS35-206ENST00000565228 PIH1D2Q8WWB5 315 aa9.3□□□□□ -0.92
VPS35-206ENST00000565228 SNX19Q92543 992 aa9.3□□□□□ -0.92
VPS35-206ENST00000565228 EID2BQ96D98 161 aa9.3□□□□□ -0.92
VPS35-206ENST00000565228 RMDN1Q96DB5 314 aa9.3□□□□□ -0.92
VPS35-206ENST00000565228 BMFQ96LC9 184 aa9.3□□□□□ -0.92
VPS35-206ENST00000565228 MYOCQ99972 504 aa9.3□□□□□ -0.92
VPS35-206ENST00000565228 SEMA3CQ99985 751 aa9.3□□□□□ -0.92
VPS35-206ENST00000565228 MIR1-1HGQ9H1L0 117 aa9.3□□□□□ -0.92
VPS35-206ENST00000565228 USP29Q9HBJ7 922 aa9.3□□□□□ -0.92
VPS35-206ENST00000565228 PCDH12Q9NPG4 1184 aa9.3□□□□□ -0.92
VPS35-206ENST00000565228 LUC7LQ9NQ29 371 aaKnown RBP9.3□□□□□ -0.92
VPS35-206ENST00000565228 MBNL1Q9NR56 388 aaKnown RBP9.3□□□□□ -0.92
VPS35-206ENST00000565228 TRMT1Q9NXH9 659 aaKnown RBP9.3□□□□□ -0.92
VPS35-206ENST00000565228 SMARCAL1Q9NZC9 954 aa9.3□□□□□ -0.92
VPS35-206ENST00000565228 DKK3Q9UBP4 350 aa9.3□□□□□ -0.92
VPS35-206ENST00000565228 RAB23Q9ULC3 237 aa9.3□□□□□ -0.92
VPS35-206ENST00000565228 NCKAP1Q9Y2A7 1128 aa9.3□□□□□ -0.92
VPS35-206ENST00000565228 ACACBO00763 2458 aa9.29□□□□□ -0.92
VPS35-206ENST00000565228 LRP4O75096 1905 aa9.29□□□□□ -0.92
VPS35-206ENST00000565228 WDFY3Q8IZQ1 3526 aa9.29□□□□□ -0.92
VPS35-206ENST00000565228 A8MX80 341 aa9.29□□□□□ -0.92
VPS35-206ENST00000565228 APOC4-APOC2K7ER74 178 aa9.29□□□□□ -0.92
VPS35-206ENST00000565228 RIOK3O14730 519 aaKnown RBP9.29□□□□□ -0.92
VPS35-206ENST00000565228 TM4SF5O14894 197 aa9.29□□□□□ -0.92
VPS35-206ENST00000565228 SLC31A1O15431 190 aa9.29□□□□□ -0.92
VPS35-206ENST00000565228 AP1G1O43747 822 aa9.29□□□□□ -0.92
VPS35-206ENST00000565228 IPO7O95373 1038 aaKnown RBP9.29□□□□□ -0.92
VPS35-206ENST00000565228 MT-CYBP00156 380 aaPredicted RBP9.29□□□□□ -0.92
VPS35-206ENST00000565228 APOC2P02655 101 aa9.29□□□□□ -0.92
VPS35-206ENST00000565228 ALPIP09923 528 aa9.29□□□□□ -0.92
VPS35-206ENST00000565228 ENGP17813 658 aa9.29□□□□□ -0.92
VPS35-206ENST00000565228 TGM2P21980 687 aa9.29□□□□□ -0.92
VPS35-206ENST00000565228 CD27P26842 260 aa9.29□□□□□ -0.92
VPS35-206ENST00000565228 MMP12P39900 470 aa9.29□□□□□ -0.92
VPS35-206ENST00000565228 RECQLP46063 649 aaPredicted RBP9.29□□□□□ -0.92
VPS35-206ENST00000565228 CCR5P51681 352 aa9.29□□□□□ -0.92
VPS35-206ENST00000565228 GDF10P55107 478 aa9.29□□□□□ -0.92
VPS35-206ENST00000565228 AP1B1Q10567 949 aa9.29□□□□□ -0.92
VPS35-206ENST00000565228 CDKN3Q16667 212 aa9.29□□□□□ -0.92
VPS35-206ENST00000565228 UGP2Q16851 508 aa9.29□□□□□ -0.92
VPS35-206ENST00000565228 KIF19Q2TAC6 998 aa9.29□□□□□ -0.92
VPS35-206ENST00000565228 TMEM52BQ4KMG9 183 aa9.29□□□□□ -0.92
VPS35-206ENST00000565228 DSG4Q86SJ6 1040 aa9.29□□□□□ -0.92
VPS35-206ENST00000565228 TTC7BQ86TV6 843 aa9.29□□□□□ -0.92
VPS35-206ENST00000565228 TSPAN33Q86UF1 283 aa9.29□□□□□ -0.92
VPS35-206ENST00000565228 HORMAD1Q86X24 394 aa9.29□□□□□ -0.92
VPS35-206ENST00000565228 CCDC50Q8IVM0 306 aa9.29□□□□□ -0.92
VPS35-206ENST00000565228 RGL4Q8IZJ4 473 aa9.29□□□□□ -0.92
VPS35-206ENST00000565228 ZNF567Q8N184 647 aa9.29□□□□□ -0.92
VPS35-206ENST00000565228 SLC22A18ASQ8N1D0 253 aa9.29□□□□□ -0.92
VPS35-206ENST00000565228 GLIS1Q8NBF1 620 aa9.29□□□□□ -0.92
VPS35-206ENST00000565228 CCNYQ8ND76 341 aa9.29□□□□□ -0.92
VPS35-206ENST00000565228 ATG4AQ8WYN0 398 aa9.29□□□□□ -0.92
VPS35-206ENST00000565228 OXNAD1Q96HP4 312 aaPredicted RBP9.29□□□□□ -0.92
VPS35-206ENST00000565228 RBM41Q96IZ5 413 aaKnown RBP9.29□□□□□ -0.92
VPS35-206ENST00000565228 LRIG1Q96JA1 1093 aa9.29□□□□□ -0.92
VPS35-206ENST00000565228 AGAP3Q96P47 875 aa9.29□□□□□ -0.92
VPS35-206ENST00000565228 QKIQ96PU8 341 aaKnown RBP eCLIP9.29□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms