RNA–Protein interactions for RNA: ENST00000562389.5

CLK3-207, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 572 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-207ENST00000562389 AREL1O15033 823 aa16.87■□□□□ 0.29
CLK3-207ENST00000562389 HTRA2O43464 458 aaPredicted RBP16.87■□□□□ 0.29
CLK3-207ENST00000562389 TSPAN6O43657 245 aa16.87■□□□□ 0.29
CLK3-207ENST00000562389 TJP3O95049 919 aa16.87■□□□□ 0.29
CLK3-207ENST00000562389 PCDH8O95206 1070 aa16.87■□□□□ 0.29
CLK3-207ENST00000562389 JCHAINP01591 159 aa16.87■□□□□ 0.29
CLK3-207ENST00000562389 LMNB2Q03252 620 aa16.87■□□□□ 0.29
CLK3-207ENST00000562389 ITKQ08881 620 aa16.87■□□□□ 0.29
CLK3-207ENST00000562389 ZNF211Q13398 564 aaPredicted RBP16.87■□□□□ 0.29
CLK3-207ENST00000562389 XRCC4Q13426 336 aa16.87■□□□□ 0.29
CLK3-207ENST00000562389 NOMO1Q15155 1222 aa16.87■□□□□ 0.29
CLK3-207ENST00000562389 UGP2Q16851 508 aa16.87■□□□□ 0.29
CLK3-207ENST00000562389 SETMARQ53H47 684 aaPredicted RBP16.87■□□□□ 0.29
CLK3-207ENST00000562389 MEI1Q5TIA1 1274 aa16.87■□□□□ 0.29
CLK3-207ENST00000562389 PRPF39Q86UA1 669 aaKnown RBP16.87■□□□□ 0.29
CLK3-207ENST00000562389 ZSWIM9Q86XI8 627 aa16.87■□□□□ 0.29
CLK3-207ENST00000562389 HAUS1Q96CS2 278 aa16.87■□□□□ 0.29
CLK3-207ENST00000562389 SEMA3CQ99985 751 aa16.87■□□□□ 0.29
CLK3-207ENST00000562389 SLC6A14Q9UN76 642 aa16.87■□□□□ 0.29
CLK3-207ENST00000562389 ZFR2Q9UPR6 939 aaKnown RBP16.87■□□□□ 0.29
CLK3-207ENST00000562389 DMTF1Q9Y222 760 aa16.87■□□□□ 0.29
CLK3-207ENST00000562389 SLCO1B1Q9Y6L6 691 aa16.87■□□□□ 0.29
CLK3-207ENST00000562389 ADAMTS9Q9P2N4 1935 aa16.86■□□□□ 0.29
CLK3-207ENST00000562389 TP53BP1Q12888 1972 aaPredicted RBP16.86■□□□□ 0.29
CLK3-207ENST00000562389 LNP1A1A4G5 178 aa16.86■□□□□ 0.29
CLK3-207ENST00000562389 ZSCAN12O43309 604 aa16.86■□□□□ 0.29
CLK3-207ENST00000562389 CFIP05156 583 aa16.86■□□□□ 0.29
CLK3-207ENST00000562389 XPAP23025 273 aaPredicted RBP16.86■□□□□ 0.29
CLK3-207ENST00000562389 MAT2AP31153 395 aaKnown RBP16.86■□□□□ 0.29
CLK3-207ENST00000562389 RPS21P63220 83 aaKnown RBP16.86■□□□□ 0.29
CLK3-207ENST00000562389 RACK1P63244 317 aaKnown RBP16.86■□□□□ 0.29
CLK3-207ENST00000562389 IRX4P78413 519 aa16.86■□□□□ 0.29
CLK3-207ENST00000562389 DSC2Q02487 901 aa16.86■□□□□ 0.29
CLK3-207ENST00000562389 ELP6Q0PNE2 266 aa16.86■□□□□ 0.29
CLK3-207ENST00000562389 CCDC173Q0VFZ6 552 aa16.86■□□□□ 0.29
CLK3-207ENST00000562389 ZNF284Q2VY69 593 aa16.86■□□□□ 0.29
CLK3-207ENST00000562389 AASDHQ4L235 1098 aaPredicted RBP16.86■□□□□ 0.29
CLK3-207ENST00000562389 TMEM259Q4ZIN3 620 aa16.86■□□□□ 0.29
CLK3-207ENST00000562389 CCDC181Q5TID7 509 aa16.86■□□□□ 0.29
CLK3-207ENST00000562389 ZC3H18Q86VM9 953 aaKnown RBP16.86■□□□□ 0.29
CLK3-207ENST00000562389 CNTD1Q8N815 330 aa16.86■□□□□ 0.29
CLK3-207ENST00000562389 ARRDC2Q8TBH0 407 aa16.86■□□□□ 0.29
CLK3-207ENST00000562389 FEM1CQ96JP0 617 aa16.86■□□□□ 0.29
CLK3-207ENST00000562389 QKIQ96PU8 341 aaKnown RBP eCLIP16.86■□□□□ 0.29
CLK3-207ENST00000562389 TM9SF3Q9HD45 589 aa16.86■□□□□ 0.29
CLK3-207ENST00000562389 GGT7Q9UJ14 662 aa16.86■□□□□ 0.29
CLK3-207ENST00000562389 ITM2BQ9Y287 266 aa16.86■□□□□ 0.29
CLK3-207ENST00000562389 PCDHGC4Q9Y5F7 938 aa16.86■□□□□ 0.29
CLK3-207ENST00000562389 CACNA1EQ15878 2313 aa16.86■□□□□ 0.29
CLK3-207ENST00000562389 LRRK1Q38SD2 2015 aa16.86■□□□□ 0.29
CLK3-207ENST00000562389 GVINP1Q7Z2Y8 2422 aa16.85■□□□□ 0.29
CLK3-207ENST00000562389 NEMP1O14524 444 aa16.85■□□□□ 0.29
CLK3-207ENST00000562389 MTSS1O43312 755 aa16.85■□□□□ 0.29
CLK3-207ENST00000562389 PTPN3P26045 913 aa16.85■□□□□ 0.29
CLK3-207ENST00000562389 GRIA4P48058 902 aa16.85■□□□□ 0.29
CLK3-207ENST00000562389 AFF3P51826 1226 aaKnown RBP16.85■□□□□ 0.29
CLK3-207ENST00000562389 POLR2LP62875 67 aaKnown RBP16.85■□□□□ 0.29
CLK3-207ENST00000562389 OTUD4Q01804 1114 aaKnown RBP16.85■□□□□ 0.29
CLK3-207ENST00000562389 TRAF2Q12933 501 aa16.85■□□□□ 0.29
CLK3-207ENST00000562389 KLF1Q13351 362 aaPredicted RBP16.85■□□□□ 0.29
CLK3-207ENST00000562389 RPS6KA1Q15418 735 aa16.85■□□□□ 0.29
CLK3-207ENST00000562389 TMEM52BQ4KMG9 183 aa16.85■□□□□ 0.29
CLK3-207ENST00000562389 TEX44Q53QW1 395 aa16.85■□□□□ 0.29
CLK3-207ENST00000562389 SLC45A4Q5BKX6 768 aa16.85■□□□□ 0.29
CLK3-207ENST00000562389 LRRC73Q5JTD7 316 aa16.85■□□□□ 0.29
CLK3-207ENST00000562389 SEL1L2Q5TEA6 688 aa16.85■□□□□ 0.29
CLK3-207ENST00000562389 SEL1L3Q68CR1 1132 aa16.85■□□□□ 0.29
CLK3-207ENST00000562389 NAPEPLDQ6IQ20 393 aa16.85■□□□□ 0.29
CLK3-207ENST00000562389 ERAP2Q6P179 960 aa16.85■□□□□ 0.29
CLK3-207ENST00000562389 B4GALNT4Q76KP1 1039 aa16.85■□□□□ 0.29
CLK3-207ENST00000562389 REXO1L1PQ8IX06 675 aa16.85■□□□□ 0.29
CLK3-207ENST00000562389 ACTL9Q8TC94 416 aa16.85■□□□□ 0.29
CLK3-207ENST00000562389 SLC6A18Q96N87 628 aa16.85■□□□□ 0.29
CLK3-207ENST00000562389 PCDH12Q9NPG4 1184 aa16.85■□□□□ 0.29
CLK3-207ENST00000562389 SEPT10Q9P0V9 454 aa16.85■□□□□ 0.29
CLK3-207ENST00000562389 TTLL3Q9Y4R7 772 aa16.85■□□□□ 0.29
CLK3-207ENST00000562389 PTPRZ1P23471 2315 aaPredicted RBP16.84■□□□□ 0.29
CLK3-207ENST00000562389 GOLGA6L9A6NEM1 432 aa16.84■□□□□ 0.29
CLK3-207ENST00000562389 RIOK3O14730 519 aaKnown RBP16.84■□□□□ 0.29
CLK3-207ENST00000562389 PGLSO95336 258 aa16.84■□□□□ 0.29
CLK3-207ENST00000562389 CPP00450 1065 aa16.84■□□□□ 0.29
CLK3-207ENST00000562389 SYPP08247 313 aa16.84■□□□□ 0.29
CLK3-207ENST00000562389 MMP12P39900 470 aa16.84■□□□□ 0.29
CLK3-207ENST00000562389 ARHGAP8P85298 464 aa16.84■□□□□ 0.29
CLK3-207ENST00000562389 NIPAL4Q0D2K0 466 aa16.84■□□□□ 0.29
CLK3-207ENST00000562389 TEAD4Q15561 434 aa16.84■□□□□ 0.29
CLK3-207ENST00000562389 TTC13Q8NBP0 860 aa16.84■□□□□ 0.29
CLK3-207ENST00000562389 CXorf40AQ8TE69 158 aa16.84■□□□□ 0.29
CLK3-207ENST00000562389 ASB12Q8WXK4 309 aa16.84■□□□□ 0.29
CLK3-207ENST00000562389 SERAC1Q96JX3 654 aa16.84■□□□□ 0.29
CLK3-207ENST00000562389 VAT1Q99536 393 aa16.84■□□□□ 0.29
CLK3-207ENST00000562389 EDEM2Q9BV94 578 aa16.84■□□□□ 0.29
CLK3-207ENST00000562389 CEP41Q9BYV8 373 aa16.84■□□□□ 0.29
CLK3-207ENST00000562389 CARD9Q9H257 536 aa16.84■□□□□ 0.29
CLK3-207ENST00000562389 RAI2Q9Y5P3 530 aa16.84■□□□□ 0.29
CLK3-207ENST00000562389 PRAMEF26H0Y7S4 382 aa16.83■□□□□ 0.28
CLK3-207ENST00000562389 H7C0C1 242 aa16.83■□□□□ 0.28
CLK3-207ENST00000562389 ARHGAP33O14559 1287 aa16.83■□□□□ 0.28
CLK3-207ENST00000562389 FZD6O60353 706 aa16.83■□□□□ 0.28
CLK3-207ENST00000562389 ENGP17813 658 aa16.83■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms