RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 ILVBLA1L0T0 632 aa11.96□□□□□ -0.49
LDLR-212ENST00000560467 E7EVH7 732 aa11.96□□□□□ -0.49
LDLR-212ENST00000560467 FLRT2O43155 660 aa11.96□□□□□ -0.49
LDLR-212ENST00000560467 TTI1O43156 1089 aa11.96□□□□□ -0.49
LDLR-212ENST00000560467 RAD51CO43502 376 aa11.96□□□□□ -0.49
LDLR-212ENST00000560467 KRT14P02533 472 aa11.96□□□□□ -0.49
LDLR-212ENST00000560467 PECAM1P16284 738 aaPredicted RBP11.96□□□□□ -0.49
LDLR-212ENST00000560467 CCNCP24863 283 aa11.96□□□□□ -0.49
LDLR-212ENST00000560467 ACSL1P33121 698 aa11.96□□□□□ -0.49
LDLR-212ENST00000560467 GARSP41250 739 aaKnown RBP11.96□□□□□ -0.49
LDLR-212ENST00000560467 TNNT3P45378 269 aaPredicted RBP11.96□□□□□ -0.49
LDLR-212ENST00000560467 RENBPP51606 427 aa11.96□□□□□ -0.49
LDLR-212ENST00000560467 GEMIN4P57678 1058 aaKnown RBP11.96□□□□□ -0.49
LDLR-212ENST00000560467 CAV1Q03135 178 aa11.96□□□□□ -0.49
LDLR-212ENST00000560467 CYP4F3Q08477 520 aa11.96□□□□□ -0.49
LDLR-212ENST00000560467 CUL1Q13616 776 aa11.96□□□□□ -0.49
LDLR-212ENST00000560467 SLC12A1Q13621 1099 aa11.96□□□□□ -0.49
LDLR-212ENST00000560467 PRPSAP1Q14558 356 aa11.96□□□□□ -0.49
LDLR-212ENST00000560467 EIF4HQ15056 248 aaKnown RBP11.96□□□□□ -0.49
LDLR-212ENST00000560467 SIX1Q15475 284 aaPredicted RBP11.96□□□□□ -0.49
LDLR-212ENST00000560467 ITPRIPL1Q6GPH6 555 aa11.96□□□□□ -0.49
LDLR-212ENST00000560467 NADSYN1Q6IA69 706 aa11.96□□□□□ -0.49
LDLR-212ENST00000560467 JAMLQ86YT9 394 aa11.96□□□□□ -0.49
LDLR-212ENST00000560467 MFN1Q8IWA4 741 aa11.96□□□□□ -0.49
LDLR-212ENST00000560467 CCDC13Q8IYE1 715 aa11.96□□□□□ -0.49
LDLR-212ENST00000560467 FAM71DQ8N9W8 422 aa11.96□□□□□ -0.49
LDLR-212ENST00000560467 CYB5D2Q8WUJ1 264 aa11.96□□□□□ -0.49
LDLR-212ENST00000560467 IFT81Q8WYA0 676 aa11.96□□□□□ -0.49
LDLR-212ENST00000560467 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP11.96□□□□□ -0.49
LDLR-212ENST00000560467 CRELD1Q96HD1 420 aa11.96□□□□□ -0.49
LDLR-212ENST00000560467 CELF6Q96J87 481 aaKnown RBP11.96□□□□□ -0.49
LDLR-212ENST00000560467 QKIQ96PU8 341 aaKnown RBP eCLIP11.96□□□□□ -0.49
LDLR-212ENST00000560467 CDC6Q99741 560 aa11.96□□□□□ -0.49
LDLR-212ENST00000560467 ERP44Q9BS26 406 aa11.96□□□□□ -0.49
LDLR-212ENST00000560467 HERPUD2Q9BSE4 406 aa11.96□□□□□ -0.49
LDLR-212ENST00000560467 TMEM121Q9BTD3 319 aa11.96□□□□□ -0.49
LDLR-212ENST00000560467 FAM129AQ9BZQ8 928 aa11.96□□□□□ -0.49
LDLR-212ENST00000560467 EPB41L5Q9HCM4 733 aa11.96□□□□□ -0.49
LDLR-212ENST00000560467 SEPT10Q9P0V9 454 aa11.96□□□□□ -0.49
LDLR-212ENST00000560467 KIAA1522Q9P206 1035 aaPredicted RBP11.96□□□□□ -0.49
LDLR-212ENST00000560467 PAK5Q9P286 719 aa11.96□□□□□ -0.49
LDLR-212ENST00000560467 MTRF1LQ9UGC7 380 aaKnown RBP11.96□□□□□ -0.49
LDLR-212ENST00000560467 NOL12Q9UGY1 213 aaKnown RBP eCLIP11.96□□□□□ -0.49
LDLR-212ENST00000560467 ZBTB32Q9Y2Y4 487 aaPredicted RBP11.96□□□□□ -0.49
LDLR-212ENST00000560467 PCDHGB2Q9Y5G2 931 aa11.96□□□□□ -0.49
LDLR-212ENST00000560467 SNX11Q9Y5W9 270 aa11.96□□□□□ -0.49
LDLR-212ENST00000560467 V9GYY5 206 aaPredicted RBP11.96□□□□□ -0.49
LDLR-212ENST00000560467 GCN1Q92616 2671 aaKnown RBP11.96□□□□□ -0.5
LDLR-212ENST00000560467 UQCRHLA0A096LP55 91 aa11.95□□□□□ -0.5
LDLR-212ENST00000560467 ZSCAN5CA6NGD5 496 aaPredicted RBP11.95□□□□□ -0.5
LDLR-212ENST00000560467 RASA4BC9J798 803 aa11.95□□□□□ -0.5
LDLR-212ENST00000560467 SMAPO00193 183 aa11.95□□□□□ -0.5
LDLR-212ENST00000560467 RASA4O43374 803 aa11.95□□□□□ -0.5
LDLR-212ENST00000560467 MFSD11O43934 449 aa11.95□□□□□ -0.5
LDLR-212ENST00000560467 LUC7L3O95232 432 aaKnown RBP11.95□□□□□ -0.5
LDLR-212ENST00000560467 UQCRHP07919 91 aa11.95□□□□□ -0.5
LDLR-212ENST00000560467 ITIH2P19823 946 aa11.95□□□□□ -0.5
LDLR-212ENST00000560467 HOXD9P28356 352 aaPredicted RBP11.95□□□□□ -0.5
LDLR-212ENST00000560467 SLC6A4P31645 630 aa11.95□□□□□ -0.5
LDLR-212ENST00000560467 LMAN1P49257 510 aa11.95□□□□□ -0.5
LDLR-212ENST00000560467 PAPOLAP51003 745 aaKnown RBP11.95□□□□□ -0.5
LDLR-212ENST00000560467 AFF3P51826 1226 aaKnown RBP11.95□□□□□ -0.5
LDLR-212ENST00000560467 DRG2P55039 364 aaKnown RBP11.95□□□□□ -0.5
LDLR-212ENST00000560467 RPS24P62847 133 aaKnown RBP11.95□□□□□ -0.5
LDLR-212ENST00000560467 SARNPP82979 210 aaKnown RBP11.95□□□□□ -0.5
LDLR-212ENST00000560467 IL9RQ01113 521 aa11.95□□□□□ -0.5
LDLR-212ENST00000560467 GNA12Q03113 381 aa11.95□□□□□ -0.5
LDLR-212ENST00000560467 PPIDQ08752 370 aaKnown RBP11.95□□□□□ -0.5
LDLR-212ENST00000560467 PTK6Q13882 451 aa11.95□□□□□ -0.5
LDLR-212ENST00000560467 HLTFQ14527 1009 aaKnown RBP eCLIP11.95□□□□□ -0.5
LDLR-212ENST00000560467 OASLQ15646 514 aaKnown RBP11.95□□□□□ -0.5
LDLR-212ENST00000560467 P3H1Q32P28 736 aa11.95□□□□□ -0.5
LDLR-212ENST00000560467 FNDC3BQ53EP0 1204 aaKnown RBP11.95□□□□□ -0.5
LDLR-212ENST00000560467 TTC27Q6P3X3 843 aa11.95□□□□□ -0.5
LDLR-212ENST00000560467 DBX2Q6ZNG2 339 aa11.95□□□□□ -0.5
LDLR-212ENST00000560467 NLRP14Q86W24 1093 aa11.95□□□□□ -0.5
LDLR-212ENST00000560467 FAM217AQ8IXS0 508 aa11.95□□□□□ -0.5
LDLR-212ENST00000560467 ZNF683Q8IZ20 524 aa11.95□□□□□ -0.5
LDLR-212ENST00000560467 OR2T3Q8NH03 318 aa11.95□□□□□ -0.5
LDLR-212ENST00000560467 HDAC11Q96DB2 347 aa11.95□□□□□ -0.5
LDLR-212ENST00000560467 TSGA13Q96PP4 275 aa11.95□□□□□ -0.5
LDLR-212ENST00000560467 C2orf49Q9BVC5 232 aaPredicted RBP11.95□□□□□ -0.5
LDLR-212ENST00000560467 KLC2Q9H0B6 622 aa11.95□□□□□ -0.5
LDLR-212ENST00000560467 PCDH9Q9HC56 1237 aa11.95□□□□□ -0.5
LDLR-212ENST00000560467 TM9SF3Q9HD45 589 aa11.95□□□□□ -0.5
LDLR-212ENST00000560467 SCUBE2Q9NQ36 999 aa11.95□□□□□ -0.5
LDLR-212ENST00000560467 ETNK2Q9NVF9 386 aa11.95□□□□□ -0.5
LDLR-212ENST00000560467 KLHL8Q9P2G9 620 aaPredicted RBP11.95□□□□□ -0.5
LDLR-212ENST00000560467 IPO11Q9UI26 975 aaKnown RBP11.95□□□□□ -0.5
LDLR-212ENST00000560467 URB1O60287 2271 aaKnown RBP11.95□□□□□ -0.5
LDLR-212ENST00000560467 FLNBO75369 2602 aaKnown RBP11.95□□□□□ -0.5
LDLR-212ENST00000560467 ADAMTS20P59510 1910 aa11.95□□□□□ -0.5
LDLR-212ENST00000560467 CABIN1Q9Y6J0 2220 aa11.94□□□□□ -0.5
LDLR-212ENST00000560467 TRABD2BA6NFA1 517 aa11.94□□□□□ -0.5
LDLR-212ENST00000560467 C5orf60A6NFR6 353 aa11.94□□□□□ -0.5
LDLR-212ENST00000560467 CTIFO43310 598 aaKnown RBP11.94□□□□□ -0.5
LDLR-212ENST00000560467 GCATO75600 419 aa11.94□□□□□ -0.5
LDLR-212ENST00000560467 CNTN5O94779 1100 aa11.94□□□□□ -0.5
LDLR-212ENST00000560467 FSBPO95073 299 aa11.94□□□□□ -0.5
LDLR-212ENST00000560467 SEMA4FO95754 770 aa11.94□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms