RNA–Protein interactions for RNA: ENST00000556534.1

SCFD1-221, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 864 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-221ENST00000556534 AGO1Q9UL18 857 aaKnown RBP4.74□□□□□ -1.65
SCFD1-221ENST00000556534 ARHGAP26Q9UNA1 814 aa4.74□□□□□ -1.65
SCFD1-221ENST00000556534 DDX52Q9Y2R4 599 aaKnown RBP eCLIP4.74□□□□□ -1.65
SCFD1-221ENST00000556534 CYP46A1Q9Y6A2 500 aa4.74□□□□□ -1.65
SCFD1-221ENST00000556534 A0A1W2PQM1 296 aa4.73□□□□□ -1.65
SCFD1-221ENST00000556534 DYTNA2CJ06 578 aa4.73□□□□□ -1.65
SCFD1-221ENST00000556534 PROB1E7EW31 1015 aa4.73□□□□□ -1.65
SCFD1-221ENST00000556534 GTPBP1O00178 669 aaKnown RBP4.73□□□□□ -1.65
SCFD1-221ENST00000556534 TAF4O00268 1085 aa4.73□□□□□ -1.65
SCFD1-221ENST00000556534 TSPAN4O14817 238 aa4.73□□□□□ -1.65
SCFD1-221ENST00000556534 RGS11O94810 467 aa4.73□□□□□ -1.65
SCFD1-221ENST00000556534 PCNAP12004 261 aa4.73□□□□□ -1.65
SCFD1-221ENST00000556534 COX7A2P14406 83 aa4.73□□□□□ -1.65
SCFD1-221ENST00000556534 BNC1Q01954 994 aa4.73□□□□□ -1.65
SCFD1-221ENST00000556534 TRAF3Q13114 568 aa4.73□□□□□ -1.65
SCFD1-221ENST00000556534 HSP90AB4PQ58FF6 505 aa4.73□□□□□ -1.65
SCFD1-221ENST00000556534 FAM69AQ5T7M9 428 aa4.73□□□□□ -1.65
SCFD1-221ENST00000556534 INTS11Q5TA45 600 aaKnown RBP4.73□□□□□ -1.65
SCFD1-221ENST00000556534 TXNDC8Q6A555 127 aa4.73□□□□□ -1.65
SCFD1-221ENST00000556534 CES5AQ6NT32 575 aa4.73□□□□□ -1.65
SCFD1-221ENST00000556534 PDXDC1Q6P996 788 aa4.73□□□□□ -1.65
SCFD1-221ENST00000556534 CCDC129Q6ZRS4 1044 aa4.73□□□□□ -1.65
SCFD1-221ENST00000556534 RRM2BQ7LG56 351 aa4.73□□□□□ -1.65
SCFD1-221ENST00000556534 NOXA1Q86UR1 476 aa4.73□□□□□ -1.65
SCFD1-221ENST00000556534 SPATA2LQ8IUW3 424 aaPredicted RBP4.73□□□□□ -1.65
SCFD1-221ENST00000556534 CLIP4Q8N3C7 705 aa4.73□□□□□ -1.65
SCFD1-221ENST00000556534 AADATQ8N5Z0 425 aa4.73□□□□□ -1.65
SCFD1-221ENST00000556534 NFKBIDQ8NI38 313 aa4.73□□□□□ -1.65
SCFD1-221ENST00000556534 FAM216AQ8WUB2 273 aa4.73□□□□□ -1.65
SCFD1-221ENST00000556534 KLHL29Q96CT2 875 aa4.73□□□□□ -1.65
SCFD1-221ENST00000556534 RRP36Q96EU6 259 aaKnown RBP4.73□□□□□ -1.65
SCFD1-221ENST00000556534 ZC3HAV1LQ96H79 300 aaKnown RBP4.73□□□□□ -1.65
SCFD1-221ENST00000556534 THOC3Q96J01 351 aaKnown RBP4.73□□□□□ -1.65
SCFD1-221ENST00000556534 KLHL15Q96M94 604 aa4.73□□□□□ -1.65
SCFD1-221ENST00000556534 MXRA8Q9BRK3 442 aa4.73□□□□□ -1.65
SCFD1-221ENST00000556534 GLIS2Q9BZE0 524 aaPredicted RBP4.73□□□□□ -1.65
SCFD1-221ENST00000556534 PAIP1Q9H074 479 aaKnown RBP4.73□□□□□ -1.65
SCFD1-221ENST00000556534 DDX4Q9NQI0 724 aaKnown RBP4.73□□□□□ -1.65
SCFD1-221ENST00000556534 OR6C3Q9NZP0 311 aa4.73□□□□□ -1.65
SCFD1-221ENST00000556534 KCND2Q9NZV8 630 aa4.73□□□□□ -1.65
SCFD1-221ENST00000556534 MPP6Q9NZW5 540 aa4.73□□□□□ -1.65
SCFD1-221ENST00000556534 A0A1B0GVM2 712 aa4.72□□□□□ -1.65
SCFD1-221ENST00000556534 GLUD1P00367 558 aa4.72□□□□□ -1.65
SCFD1-221ENST00000556534 T-ENOLP0DO92 83 aa4.72□□□□□ -1.65
SCFD1-221ENST00000556534 CHATP28329 748 aa4.72□□□□□ -1.65
SCFD1-221ENST00000556534 TNFRSF8P28908 595 aa4.72□□□□□ -1.65
SCFD1-221ENST00000556534 C21orf33P30042 268 aaPredicted RBP4.72□□□□□ -1.65
SCFD1-221ENST00000556534 GLUD2P49448 558 aa4.72□□□□□ -1.65
SCFD1-221ENST00000556534 GRIK3Q13003 919 aa4.72□□□□□ -1.65
SCFD1-221ENST00000556534 RNPS1Q15287 305 aaKnown RBP4.72□□□□□ -1.65
SCFD1-221ENST00000556534 SOWAHAQ2M3V2 549 aa4.72□□□□□ -1.65
SCFD1-221ENST00000556534 MMS22LQ6ZRQ5 1243 aa4.72□□□□□ -1.65
SCFD1-221ENST00000556534 DHX40Q8IX18 779 aaKnown RBP4.72□□□□□ -1.65
SCFD1-221ENST00000556534 TRIB2Q92519 343 aa4.72□□□□□ -1.65
SCFD1-221ENST00000556534 ERGIC1Q969X5 290 aa4.72□□□□□ -1.65
SCFD1-221ENST00000556534 ZUFSPQ96AP4 578 aa4.72□□□□□ -1.65
SCFD1-221ENST00000556534 KIF1BPQ96EK5 621 aa4.72□□□□□ -1.65
SCFD1-221ENST00000556534 TXNDC15Q96J42 360 aa4.72□□□□□ -1.65
SCFD1-221ENST00000556534 BBS4Q96RK4 519 aa4.72□□□□□ -1.65
SCFD1-221ENST00000556534 SEZ6LQ9BYH1 1024 aa4.72□□□□□ -1.65
SCFD1-221ENST00000556534 CD93Q9NPY3 652 aa4.72□□□□□ -1.65
SCFD1-221ENST00000556534 SELENONQ9NZV5 590 aa4.72□□□□□ -1.65
SCFD1-221ENST00000556534 LINC01553A4QN01 128 aa4.71□□□□□ -1.66
SCFD1-221ENST00000556534 NPIPB11E5RHQ5 1161 aa4.71□□□□□ -1.66
SCFD1-221ENST00000556534 WNT9BO14905 357 aa4.71□□□□□ -1.66
SCFD1-221ENST00000556534 SLC28A2O43868 658 aa4.71□□□□□ -1.66
SCFD1-221ENST00000556534 MT-CYBP00156 380 aaPredicted RBP4.71□□□□□ -1.66
SCFD1-221ENST00000556534 EPHA8P29322 1005 aaPredicted RBP4.71□□□□□ -1.66
SCFD1-221ENST00000556534 ABCD1P33897 745 aa4.71□□□□□ -1.66
SCFD1-221ENST00000556534 PIGAP37287 484 aa4.71□□□□□ -1.66
SCFD1-221ENST00000556534 PAFAH1B1P43034 410 aa4.71□□□□□ -1.66
SCFD1-221ENST00000556534 HDAC4P56524 1084 aa4.71□□□□□ -1.66
SCFD1-221ENST00000556534 VEPH1Q14D04 833 aa4.71□□□□□ -1.66
SCFD1-221ENST00000556534 ARHGEF6Q15052 776 aa4.71□□□□□ -1.66
SCFD1-221ENST00000556534 ACAD10Q6JQN1 1059 aa4.71□□□□□ -1.66
SCFD1-221ENST00000556534 ARHGAP30Q7Z6I6 1101 aaPredicted RBP4.71□□□□□ -1.66
SCFD1-221ENST00000556534 RBM23Q86U06 439 aaKnown RBP4.71□□□□□ -1.66
SCFD1-221ENST00000556534 FJX1Q86VR8 437 aa4.71□□□□□ -1.66
SCFD1-221ENST00000556534 TCP11L2Q8N4U5 519 aa4.71□□□□□ -1.66
SCFD1-221ENST00000556534 TSPYL6Q8N831 410 aa4.71□□□□□ -1.66
SCFD1-221ENST00000556534 OTULINQ96BN8 352 aa4.71□□□□□ -1.66
SCFD1-221ENST00000556534 PPM1MQ96MI6 270 aa4.71□□□□□ -1.66
SCFD1-221ENST00000556534 SIN3AQ96ST3 1273 aa4.71□□□□□ -1.66
SCFD1-221ENST00000556534 SLC25A33Q9BSK2 321 aa4.71□□□□□ -1.66
SCFD1-221ENST00000556534 WDR26Q9H7D7 661 aa4.71□□□□□ -1.66
SCFD1-221ENST00000556534 VEZTQ9HBM0 779 aa4.71□□□□□ -1.66
SCFD1-221ENST00000556534 SMYD2Q9NRG4 433 aa4.71□□□□□ -1.66
SCFD1-221ENST00000556534 TMEM98Q9Y2Y6 226 aa4.71□□□□□ -1.66
SCFD1-221ENST00000556534 IGLV5-52A0A0A0MRZ9 124 aa4.7□□□□□ -1.66
SCFD1-221ENST00000556534 BCAT2O15382 392 aaPredicted RBP4.7□□□□□ -1.66
SCFD1-221ENST00000556534 KCNJ13O60928 360 aa4.7□□□□□ -1.66
SCFD1-221ENST00000556534 NDUFB4O95168 129 aa4.7□□□□□ -1.66
SCFD1-221ENST00000556534 VNN2O95498 520 aa4.7□□□□□ -1.66
SCFD1-221ENST00000556534 ATP1A3P13637 1013 aa4.7□□□□□ -1.66
SCFD1-221ENST00000556534 ETFAP13804 333 aa4.7□□□□□ -1.66
SCFD1-221ENST00000556534 ZNF12P17014 697 aa4.7□□□□□ -1.66
SCFD1-221ENST00000556534 AGAP20933 346 aa4.7□□□□□ -1.66
SCFD1-221ENST00000556534 TKTP29401 623 aaKnown RBP4.7□□□□□ -1.66
SCFD1-221ENST00000556534 RPL3P39023 403 aaKnown RBP4.7□□□□□ -1.66
SCFD1-221ENST00000556534 ARL1P40616 181 aaPredicted RBP4.7□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms