RNA–Protein interactions for RNA: ENST00000556256.1

SCFD1-218, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 428 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-218ENST00000556256 SCAMP5Q8TAC9 235 aa3.32□□□□□ -1.88
SCFD1-218ENST00000556256 LNX1Q8TBB1 728 aaPredicted RBP3.32□□□□□ -1.88
SCFD1-218ENST00000556256 FIG4Q92562 907 aa3.32□□□□□ -1.88
SCFD1-218ENST00000556256 F2RL3Q96RI0 385 aa3.32□□□□□ -1.88
SCFD1-218ENST00000556256 RTKNQ9BST9 563 aa3.32□□□□□ -1.88
SCFD1-218ENST00000556256 SLC22A11Q9NSA0 550 aa3.32□□□□□ -1.88
SCFD1-218ENST00000556256 SRP68Q9UHB9 627 aaKnown RBP3.32□□□□□ -1.88
SCFD1-218ENST00000556256 LZTS1Q9Y250 596 aa3.32□□□□□ -1.88
SCFD1-218ENST00000556256 SNX9Q9Y5X1 595 aa3.32□□□□□ -1.88
SCFD1-218ENST00000556256 CGNL1Q0VF96 1302 aa3.31□□□□□ -1.88
SCFD1-218ENST00000556256 GAGE7O76087 117 aa3.31□□□□□ -1.88
SCFD1-218ENST00000556256 ACTL6BO94805 426 aa3.31□□□□□ -1.88
SCFD1-218ENST00000556256 LARGE1O95461 756 aa3.31□□□□□ -1.88
SCFD1-218ENST00000556256 LINC00271P0C7V0 271 aa3.31□□□□□ -1.88
SCFD1-218ENST00000556256 GAGE12FP0CL80 117 aa3.31□□□□□ -1.88
SCFD1-218ENST00000556256 GAGE12GP0CL81 117 aa3.31□□□□□ -1.88
SCFD1-218ENST00000556256 GAGE12IP0CL82 117 aa3.31□□□□□ -1.88
SCFD1-218ENST00000556256 GYS1P13807 737 aa3.31□□□□□ -1.88
SCFD1-218ENST00000556256 CST5P28325 142 aaPredicted RBP3.31□□□□□ -1.88
SCFD1-218ENST00000556256 LIFRP42702 1097 aa3.31□□□□□ -1.88
SCFD1-218ENST00000556256 CDK7P50613 346 aa3.31□□□□□ -1.88
SCFD1-218ENST00000556256 ARL4CP56559 192 aa3.31□□□□□ -1.88
SCFD1-218ENST00000556256 CDK18Q07002 472 aa3.31□□□□□ -1.88
SCFD1-218ENST00000556256 GAGE1Q13065 139 aa3.31□□□□□ -1.88
SCFD1-218ENST00000556256 GAGE4Q13068 117 aa3.31□□□□□ -1.88
SCFD1-218ENST00000556256 ALKBH1Q13686 389 aaKnown RBP3.31□□□□□ -1.88
SCFD1-218ENST00000556256 PRKG1Q13976 671 aa3.31□□□□□ -1.88
SCFD1-218ENST00000556256 TTC22Q5TAA0 569 aa3.31□□□□□ -1.88
SCFD1-218ENST00000556256 SFR1Q86XK3 245 aa3.31□□□□□ -1.88
SCFD1-218ENST00000556256 TBC1D22AQ8WUA7 517 aa3.31□□□□□ -1.88
SCFD1-218ENST00000556256 TRIB2Q92519 343 aa3.31□□□□□ -1.88
SCFD1-218ENST00000556256 LTV1Q96GA3 475 aaPredicted RBP3.31□□□□□ -1.88
SCFD1-218ENST00000556256 ZNF599Q96NL3 588 aa3.31□□□□□ -1.88
SCFD1-218ENST00000556256 POLR3GLQ9BT43 218 aa3.31□□□□□ -1.88
SCFD1-218ENST00000556256 CADM1Q9BY67 442 aaKnown RBP3.31□□□□□ -1.88
SCFD1-218ENST00000556256 PDE11AQ9HCR9 933 aa3.31□□□□□ -1.88
SCFD1-218ENST00000556256 SAGE1Q9NXZ1 904 aa3.31□□□□□ -1.88
SCFD1-218ENST00000556256 ZNF224Q9NZL3 707 aa3.31□□□□□ -1.88
SCFD1-218ENST00000556256 TARSL2A2RTX5 802 aaKnown RBP3.3□□□□□ -1.88
SCFD1-218ENST00000556256 CPED1A4D0V7 1026 aa3.3□□□□□ -1.88
SCFD1-218ENST00000556256 ZNF587BE7ETH6 402 aa3.3□□□□□ -1.88
SCFD1-218ENST00000556256 GRM8O00222 908 aa3.3□□□□□ -1.88
SCFD1-218ENST00000556256 HSD3B1P14060 373 aa3.3□□□□□ -1.88
SCFD1-218ENST00000556256 MCM3P25205 808 aa3.3□□□□□ -1.88
SCFD1-218ENST00000556256 AP2B1P63010 937 aa3.3□□□□□ -1.88
SCFD1-218ENST00000556256 SREBF2Q12772 1141 aa3.3□□□□□ -1.88
SCFD1-218ENST00000556256 ZNF155Q12901 538 aaPredicted RBP3.3□□□□□ -1.88
SCFD1-218ENST00000556256 PPFIA1Q13136 1202 aa3.3□□□□□ -1.88
SCFD1-218ENST00000556256 PPIGQ13427 754 aaKnown RBP eCLIP3.3□□□□□ -1.88
SCFD1-218ENST00000556256 BTBD16Q32M84 506 aa3.3□□□□□ -1.88
SCFD1-218ENST00000556256 ZNF484Q5JVG2 852 aa3.3□□□□□ -1.88
SCFD1-218ENST00000556256 ZC2HC1BQ5TFG8 222 aa3.3□□□□□ -1.88
SCFD1-218ENST00000556256 KLHL17Q6TDP4 642 aa3.3□□□□□ -1.88
SCFD1-218ENST00000556256 SPPL3Q8TCT6 385 aa3.3□□□□□ -1.88
SCFD1-218ENST00000556256 PPM1EQ8WY54 764 aa3.3□□□□□ -1.88
SCFD1-218ENST00000556256 KCNJ9Q92806 393 aa3.3□□□□□ -1.88
SCFD1-218ENST00000556256 GCC1Q96CN9 775 aa3.3□□□□□ -1.88
SCFD1-218ENST00000556256 TTC14Q96N46 770 aa3.3□□□□□ -1.88
SCFD1-218ENST00000556256 LRFN5Q96NI6 719 aa3.3□□□□□ -1.88
SCFD1-218ENST00000556256 TEFMQ96QE5 360 aaKnown RBP3.3□□□□□ -1.88
SCFD1-218ENST00000556256 CSF3RQ99062 836 aa3.3□□□□□ -1.88
SCFD1-218ENST00000556256 TWSG1Q9GZX9 223 aa3.3□□□□□ -1.88
SCFD1-218ENST00000556256 MVB12BQ9H7P6 319 aa3.3□□□□□ -1.88
SCFD1-218ENST00000556256 ITM2CQ9NQX7 267 aa3.3□□□□□ -1.88
SCFD1-218ENST00000556256 DAPP1Q9UN19 280 aa3.3□□□□□ -1.88
SCFD1-218ENST00000556256 PAM16Q9Y3D7 125 aa3.3□□□□□ -1.88
SCFD1-218ENST00000556256 A0A0G2JPF8 293 aa3.29□□□□□ -1.88
SCFD1-218ENST00000556256 NPIPB13A6NJU9 1138 aa3.29□□□□□ -1.88
SCFD1-218ENST00000556256 NPIPB5A8MRT5 1133 aa3.29□□□□□ -1.88
SCFD1-218ENST00000556256 HNRNPCL3B7ZW38 293 aa3.29□□□□□ -1.88
SCFD1-218ENST00000556256 B9A039 149 aa3.29□□□□□ -1.88
SCFD1-218ENST00000556256 NPIPB4C9JG80 1138 aa3.29□□□□□ -1.88
SCFD1-218ENST00000556256 HNRNPCL1O60812 293 aaKnown RBP3.29□□□□□ -1.88
SCFD1-218ENST00000556256 HNRNPCL4P0DMR1 293 aa3.29□□□□□ -1.88
SCFD1-218ENST00000556256 ADD2P35612 726 aa3.29□□□□□ -1.88
SCFD1-218ENST00000556256 PCP4P48539 62 aa3.29□□□□□ -1.88
SCFD1-218ENST00000556256 CCT5P48643 541 aa3.29□□□□□ -1.88
SCFD1-218ENST00000556256 CSRP3P50461 194 aa3.29□□□□□ -1.88
SCFD1-218ENST00000556256 KRTAP12-2P59991 146 aa3.29□□□□□ -1.88
SCFD1-218ENST00000556256 TNFAIP1Q13829 316 aa3.29□□□□□ -1.88
SCFD1-218ENST00000556256 EFR3AQ14156 821 aa3.29□□□□□ -1.88
SCFD1-218ENST00000556256 ATPAF1Q5TC12 328 aaPredicted RBP3.29□□□□□ -1.88
SCFD1-218ENST00000556256 ARHGAP17Q68EM7 881 aa3.29□□□□□ -1.88
SCFD1-218ENST00000556256 NFRKBQ6P4R8 1299 aa3.29□□□□□ -1.88
SCFD1-218ENST00000556256 CCDC129Q6ZRS4 1044 aa3.29□□□□□ -1.88
SCFD1-218ENST00000556256 RAB11FIP2Q7L804 512 aa3.29□□□□□ -1.88
SCFD1-218ENST00000556256 DSG4Q86SJ6 1040 aa3.29□□□□□ -1.88
SCFD1-218ENST00000556256 SLC9B2Q86UD5 537 aa3.29□□□□□ -1.88
SCFD1-218ENST00000556256 GTSCR1Q86UQ5 136 aa3.29□□□□□ -1.88
SCFD1-218ENST00000556256 MOGAT3Q86VF5 341 aa3.29□□□□□ -1.88
SCFD1-218ENST00000556256 HERC6Q8IVU3 1022 aa3.29□□□□□ -1.88
SCFD1-218ENST00000556256 CPXCR1Q8N123 301 aa3.29□□□□□ -1.88
SCFD1-218ENST00000556256 DMBX1Q8NFW5 382 aa3.29□□□□□ -1.88
SCFD1-218ENST00000556256 HMGB4Q8WW32 186 aa3.29□□□□□ -1.88
SCFD1-218ENST00000556256 THAP4Q8WY91 577 aa3.29□□□□□ -1.88
SCFD1-218ENST00000556256 ATOH1Q92858 354 aaPredicted RBP3.29□□□□□ -1.88
SCFD1-218ENST00000556256 SDCCAG3Q96C92 435 aa3.29□□□□□ -1.88
SCFD1-218ENST00000556256 C3orf30Q96M34 536 aa3.29□□□□□ -1.88
SCFD1-218ENST00000556256 SCLT1Q96NL6 688 aa3.29□□□□□ -1.88
SCFD1-218ENST00000556256 PAGR1Q9BTK6 254 aa3.29□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms