RNA–Protein interactions for RNA: ENST00000555351.1

VRK1-204, Transcript of vaccinia related kinase 1, humanhuman

TSL 2

Gene VRK1, Length 667 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-204ENST00000555351 EVA1BQ9NVM1 165 aa11.96□□□□□ -0.49
VRK1-204ENST00000555351 NLGN3Q9NZ94 848 aa11.96□□□□□ -0.49
VRK1-204ENST00000555351 NCKIPSDQ9NZQ3 722 aa11.96□□□□□ -0.49
VRK1-204ENST00000555351 SEPT3Q9UH03 358 aa11.96□□□□□ -0.49
VRK1-204ENST00000555351 IPO11Q9UI26 975 aaKnown RBP11.96□□□□□ -0.49
VRK1-204ENST00000555351 ANAPC7Q9UJX3 599 aa11.96□□□□□ -0.49
VRK1-204ENST00000555351 ZMIZ1Q9ULJ6 1067 aa11.96□□□□□ -0.49
VRK1-204ENST00000555351 AKAP13Q12802 2813 aa11.95□□□□□ -0.5
VRK1-204ENST00000555351 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP11.95□□□□□ -0.5
VRK1-204ENST00000555351 TMEM110-MUSTN1A8MSY1 372 aa11.95□□□□□ -0.5
VRK1-204ENST00000555351 SCAMP1O15126 338 aa11.95□□□□□ -0.5
VRK1-204ENST00000555351 RARAP10276 462 aa11.95□□□□□ -0.5
VRK1-204ENST00000555351 NME1P15531 152 aaKnown RBP11.95□□□□□ -0.5
VRK1-204ENST00000555351 XPAP23025 273 aaPredicted RBP11.95□□□□□ -0.5
VRK1-204ENST00000555351 HNF1BP35680 557 aa11.95□□□□□ -0.5
VRK1-204ENST00000555351 PEX5P50542 639 aa11.95□□□□□ -0.5
VRK1-204ENST00000555351 E2F1Q01094 437 aa11.95□□□□□ -0.5
VRK1-204ENST00000555351 NFKBIBQ15653 356 aa11.95□□□□□ -0.5
VRK1-204ENST00000555351 TSR1Q2NL82 804 aaKnown RBP11.95□□□□□ -0.5
VRK1-204ENST00000555351 CFAP58Q5T655 872 aa11.95□□□□□ -0.5
VRK1-204ENST00000555351 BBS5Q8N3I7 341 aa11.95□□□□□ -0.5
VRK1-204ENST00000555351 NPWQ8N729 165 aa11.95□□□□□ -0.5
VRK1-204ENST00000555351 PDCD7Q8N8D1 485 aaKnown RBP11.95□□□□□ -0.5
VRK1-204ENST00000555351 TSEN2Q8NCE0 465 aaKnown RBP11.95□□□□□ -0.5
VRK1-204ENST00000555351 FATE1Q969F0 183 aa11.95□□□□□ -0.5
VRK1-204ENST00000555351 CSPG4P5Q96PW8 444 aa11.95□□□□□ -0.5
VRK1-204ENST00000555351 CINPQ9BW66 212 aaPredicted RBP11.95□□□□□ -0.5
VRK1-204ENST00000555351 ITM2BQ9Y287 266 aa11.95□□□□□ -0.5
VRK1-204ENST00000555351 PLXNB3Q9ULL4 1909 aa11.95□□□□□ -0.5
VRK1-204ENST00000555351 DFFAO00273 331 aa11.94□□□□□ -0.5
VRK1-204ENST00000555351 TRIM38O00635 465 aa11.94□□□□□ -0.5
VRK1-204ENST00000555351 TPP1O14773 563 aa11.94□□□□□ -0.5
VRK1-204ENST00000555351 INSIG1O15503 277 aa11.94□□□□□ -0.5
VRK1-204ENST00000555351 SIGLEC6O43699 453 aa11.94□□□□□ -0.5
VRK1-204ENST00000555351 BUB1BO60566 1050 aaPredicted RBP11.94□□□□□ -0.5
VRK1-204ENST00000555351 SOCS5O75159 536 aa11.94□□□□□ -0.5
VRK1-204ENST00000555351 GP1BAP07359 652 aa11.94□□□□□ -0.5
VRK1-204ENST00000555351 TPM1P09493 284 aa11.94□□□□□ -0.5
VRK1-204ENST00000555351 H2AFZP0C0S5 128 aa11.94□□□□□ -0.5
VRK1-204ENST00000555351 GIMD1P0DJR0 217 aa11.94□□□□□ -0.5
VRK1-204ENST00000555351 CKMT1AP12532 417 aa11.94□□□□□ -0.5
VRK1-204ENST00000555351 NFKBIAP25963 317 aa11.94□□□□□ -0.5
VRK1-204ENST00000555351 MAN1A1P33908 653 aa11.94□□□□□ -0.5
VRK1-204ENST00000555351 MMP12P39900 470 aa11.94□□□□□ -0.5
VRK1-204ENST00000555351 DUSP3P51452 185 aaPredicted RBP11.94□□□□□ -0.5
VRK1-204ENST00000555351 CDH6P55285 790 aa11.94□□□□□ -0.5
VRK1-204ENST00000555351 BCL2L1Q07817 233 aa11.94□□□□□ -0.5
VRK1-204ENST00000555351 CAMK2BQ13554 666 aa11.94□□□□□ -0.5
VRK1-204ENST00000555351 LBRQ14739 615 aaKnown RBP11.94□□□□□ -0.5
VRK1-204ENST00000555351 ASTE1Q2TB18 679 aaPredicted RBP11.94□□□□□ -0.5
VRK1-204ENST00000555351 DHRS13Q6UX07 377 aa11.94□□□□□ -0.5
VRK1-204ENST00000555351 H2AFVQ71UI9 128 aa11.94□□□□□ -0.5
VRK1-204ENST00000555351 PROSER1Q86XN7 944 aa11.94□□□□□ -0.5
VRK1-204ENST00000555351 SDR16C5Q8N3Y7 309 aa11.94□□□□□ -0.5
VRK1-204ENST00000555351 TP53I13Q8NBR0 393 aaPredicted RBP11.94□□□□□ -0.5
VRK1-204ENST00000555351 CTNNBL1Q8WYA6 563 aaPredicted RBP11.94□□□□□ -0.5
VRK1-204ENST00000555351 HSPH1Q92598 858 aa11.94□□□□□ -0.5
VRK1-204ENST00000555351 EXOC2Q96KP1 924 aa11.94□□□□□ -0.5
VRK1-204ENST00000555351 TSPY26PQ9H489 355 aa11.94□□□□□ -0.5
VRK1-204ENST00000555351 CCDC86Q9H6F5 360 aaKnown RBP11.94□□□□□ -0.5
VRK1-204ENST00000555351 PCDH18Q9HCL0 1135 aa11.94□□□□□ -0.5
VRK1-204ENST00000555351 PCDH12Q9NPG4 1184 aa11.94□□□□□ -0.5
VRK1-204ENST00000555351 ZNHIT6Q9NWK9 470 aaKnown RBP11.94□□□□□ -0.5
VRK1-204ENST00000555351 DNAJC28Q9NX36 388 aa11.94□□□□□ -0.5
VRK1-204ENST00000555351 KCTD5Q9NXV2 234 aa11.94□□□□□ -0.5
VRK1-204ENST00000555351 GGT7Q9UJ14 662 aa11.94□□□□□ -0.5
VRK1-204ENST00000555351 ATP8A1Q9Y2Q0 1164 aa11.94□□□□□ -0.5
VRK1-204ENST00000555351 CACNA1BQ00975 2339 aa11.94□□□□□ -0.5
VRK1-204ENST00000555351 FRYQ5TBA9 3013 aa11.94□□□□□ -0.5
VRK1-204ENST00000555351 GOLGA8CPA6NN73 597 aa11.93□□□□□ -0.5
VRK1-204ENST00000555351 ZNF487B1APH4 448 aa11.93□□□□□ -0.5
VRK1-204ENST00000555351 TRAFD1O14545 582 aaPredicted RBP11.93□□□□□ -0.5
VRK1-204ENST00000555351 HTRA2O43464 458 aaPredicted RBP11.93□□□□□ -0.5
VRK1-204ENST00000555351 MAFKO60675 156 aa11.93□□□□□ -0.5
VRK1-204ENST00000555351 MMP20O60882 483 aa11.93□□□□□ -0.5
VRK1-204ENST00000555351 SDC3O75056 442 aa11.93□□□□□ -0.5
VRK1-204ENST00000555351 PROSCO94903 275 aa11.93□□□□□ -0.5
VRK1-204ENST00000555351 PIGNO95427 931 aa11.93□□□□□ -0.5
VRK1-204ENST00000555351 PEX11BO96011 259 aa11.93□□□□□ -0.5
VRK1-204ENST00000555351 TMEM253P0C7T8 217 aa11.93□□□□□ -0.5
VRK1-204ENST00000555351 TCF4P15884 667 aa11.93□□□□□ -0.5
VRK1-204ENST00000555351 CR2P20023 1033 aa11.93□□□□□ -0.5
VRK1-204ENST00000555351 AMPD1P23109 780 aa11.93□□□□□ -0.5
VRK1-204ENST00000555351 IGFALSP35858 605 aa11.93□□□□□ -0.5
VRK1-204ENST00000555351 EIF4A3P38919 411 aaKnown RBP11.93□□□□□ -0.5
VRK1-204ENST00000555351 RGRP47804 291 aa11.93□□□□□ -0.5
VRK1-204ENST00000555351 BLKP51451 505 aa11.93□□□□□ -0.5
VRK1-204ENST00000555351 ARSEP51690 589 aa11.93□□□□□ -0.5
VRK1-204ENST00000555351 THOP1P52888 689 aa11.93□□□□□ -0.5
VRK1-204ENST00000555351 DNAJC3Q13217 504 aa11.93□□□□□ -0.5
VRK1-204ENST00000555351 PDE1CQ14123 709 aaPredicted RBP11.93□□□□□ -0.5
VRK1-204ENST00000555351 ZNF235Q14590 738 aa11.93□□□□□ -0.5
VRK1-204ENST00000555351 LRRC14Q15048 493 aa11.93□□□□□ -0.5
VRK1-204ENST00000555351 PDK2Q15119 407 aa11.93□□□□□ -0.5
VRK1-204ENST00000555351 SMTNL2Q2TAL5 461 aa11.93□□□□□ -0.5
VRK1-204ENST00000555351 ZCCHC8Q6NZY4 707 aaKnown RBP11.93□□□□□ -0.5
VRK1-204ENST00000555351 MACC1Q6ZN28 852 aa11.93□□□□□ -0.5
VRK1-204ENST00000555351 CAMK1DQ8IU85 385 aa11.93□□□□□ -0.5
VRK1-204ENST00000555351 VSTM4Q8IW00 320 aa11.93□□□□□ -0.5
VRK1-204ENST00000555351 MAP7D3Q8IWC1 876 aa11.93□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 53.1 ms