RNA–Protein interactions for RNA: ENST00000553837.5

SHMT2-207, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 2,152 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-207ENST00000553837 GPR141Q7Z602 305 aa12.36□□□□□ -0.43
SHMT2-207ENST00000553837 C10orf107Q8IVU9 208 aa12.36□□□□□ -0.43
SHMT2-207ENST00000553837 TMEM102Q8N9M5 508 aaPredicted RBP12.36□□□□□ -0.43
SHMT2-207ENST00000553837 BHLHE22Q8NFJ8 381 aaPredicted RBP12.36□□□□□ -0.43
SHMT2-207ENST00000553837 CDKL2Q92772 493 aa12.36□□□□□ -0.43
SHMT2-207ENST00000553837 ZNF669Q96BR6 464 aaPredicted RBP12.36□□□□□ -0.43
SHMT2-207ENST00000553837 MFSD3Q96ES6 412 aa12.36□□□□□ -0.43
SHMT2-207ENST00000553837 SGF29Q96ES7 293 aa12.36□□□□□ -0.43
SHMT2-207ENST00000553837 RMND5BQ96G75 393 aaPredicted RBP12.36□□□□□ -0.43
SHMT2-207ENST00000553837 ZNF419Q96HQ0 510 aaPredicted RBP12.36□□□□□ -0.43
SHMT2-207ENST00000553837 LENG8Q96PV6 779 aaPredicted RBP12.36□□□□□ -0.43
SHMT2-207ENST00000553837 APBA2Q99767 749 aa12.36□□□□□ -0.43
SHMT2-207ENST00000553837 DRC3Q9H069 523 aa12.36□□□□□ -0.43
SHMT2-207ENST00000553837 CSNK1G1Q9HCP0 422 aa12.36□□□□□ -0.43
SHMT2-207ENST00000553837 CASS4Q9NQ75 786 aa12.36□□□□□ -0.43
SHMT2-207ENST00000553837 CDH7Q9ULB5 785 aa12.36□□□□□ -0.43
SHMT2-207ENST00000553837 SLC8A2Q9UPR5 921 aa12.36□□□□□ -0.43
SHMT2-207ENST00000553837 NEU3Q9UQ49 428 aa12.36□□□□□ -0.43
SHMT2-207ENST00000553837 CDY1Q9Y6F8 540 aa12.36□□□□□ -0.43
SHMT2-207ENST00000553837 SCN10AQ9Y5Y9 1956 aa12.36□□□□□ -0.43
SHMT2-207ENST00000553837 COL4A4P53420 1690 aaPredicted RBP12.36□□□□□ -0.43
SHMT2-207ENST00000553837 GOLGA8TH3BQL2 631 aa12.35□□□□□ -0.43
SHMT2-207ENST00000553837 ZBTB14O43829 449 aa12.35□□□□□ -0.43
SHMT2-207ENST00000553837 COL6A2P12110 1019 aa12.35□□□□□ -0.43
SHMT2-207ENST00000553837 GARSP41250 739 aaKnown RBP12.35□□□□□ -0.43
SHMT2-207ENST00000553837 THOP1P52888 689 aa12.35□□□□□ -0.43
SHMT2-207ENST00000553837 PGGT1BP53609 377 aa12.35□□□□□ -0.43
SHMT2-207ENST00000553837 SLC5A3P53794 718 aa12.35□□□□□ -0.43
SHMT2-207ENST00000553837 GALNT2Q10471 571 aa12.35□□□□□ -0.43
SHMT2-207ENST00000553837 DLG2Q15700 870 aa12.35□□□□□ -0.43
SHMT2-207ENST00000553837 MGAT5BQ3V5L5 792 aa12.35□□□□□ -0.43
SHMT2-207ENST00000553837 ZBED5Q49AG3 693 aa12.35□□□□□ -0.43
SHMT2-207ENST00000553837 SPANXN3Q5MJ09 141 aa12.35□□□□□ -0.43
SHMT2-207ENST00000553837 ARTNQ5T4W7 220 aa12.35□□□□□ -0.43
SHMT2-207ENST00000553837 KRT80Q6KB66 452 aa12.35□□□□□ -0.43
SHMT2-207ENST00000553837 DCDC5Q6ZRR9 648 aa12.35□□□□□ -0.43
SHMT2-207ENST00000553837 TMEM135Q86UB9 458 aa12.35□□□□□ -0.43
SHMT2-207ENST00000553837 GPR180Q86V85 440 aa12.35□□□□□ -0.43
SHMT2-207ENST00000553837 DSELQ8IZU8 1212 aa12.35□□□□□ -0.43
SHMT2-207ENST00000553837 DCLK2Q8N568 766 aa12.35□□□□□ -0.43
SHMT2-207ENST00000553837 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP12.35□□□□□ -0.43
SHMT2-207ENST00000553837 OR10T2Q8NGX3 314 aa12.35□□□□□ -0.43
SHMT2-207ENST00000553837 SCAMP5Q8TAC9 235 aa12.35□□□□□ -0.43
SHMT2-207ENST00000553837 PDCD6IPQ8WUM4 868 aaKnown RBP12.35□□□□□ -0.43
SHMT2-207ENST00000553837 THAP11Q96EK4 314 aa12.35□□□□□ -0.43
SHMT2-207ENST00000553837 SMARCD1Q96GM5 515 aa12.35□□□□□ -0.43
SHMT2-207ENST00000553837 ZNF597Q96LX8 424 aa12.35□□□□□ -0.43
SHMT2-207ENST00000553837 PKMYT1Q99640 499 aa12.35□□□□□ -0.43
SHMT2-207ENST00000553837 MRPL46Q9H2W6 279 aaKnown RBP12.35□□□□□ -0.43
SHMT2-207ENST00000553837 HIPK3Q9H422 1215 aa12.35□□□□□ -0.43
SHMT2-207ENST00000553837 WDCPQ9H6R7 721 aa12.35□□□□□ -0.43
SHMT2-207ENST00000553837 CAB39LQ9H9S4 337 aa12.35□□□□□ -0.43
SHMT2-207ENST00000553837 CLK4Q9HAZ1 481 aaKnown RBP12.35□□□□□ -0.43
SHMT2-207ENST00000553837 VANGL2Q9ULK5 521 aa12.35□□□□□ -0.43
SHMT2-207ENST00000553837 GPC6Q9Y625 555 aaPredicted RBP12.35□□□□□ -0.43
SHMT2-207ENST00000553837 PTCH2Q9Y6C5 1203 aa12.35□□□□□ -0.43
SHMT2-207ENST00000553837 A0A1B0GTW7 788 aa12.35□□□□□ -0.43
SHMT2-207ENST00000553837 BCAS2O75934 225 aaPredicted RBP12.35□□□□□ -0.43
SHMT2-207ENST00000553837 BAIAP3O94812 1187 aa12.35□□□□□ -0.43
SHMT2-207ENST00000553837 ITGB1P05556 798 aa12.35□□□□□ -0.43
SHMT2-207ENST00000553837 AKR1A1P14550 325 aa12.35□□□□□ -0.43
SHMT2-207ENST00000553837 XRCC1P18887 633 aaPredicted RBP12.35□□□□□ -0.43
SHMT2-207ENST00000553837 ME2P23368 584 aa12.35□□□□□ -0.43
SHMT2-207ENST00000553837 CD52P31358 61 aa12.35□□□□□ -0.43
SHMT2-207ENST00000553837 MAGEA12P43365 314 aa12.35□□□□□ -0.43
SHMT2-207ENST00000553837 NDST2P52849 883 aa12.35□□□□□ -0.43
SHMT2-207ENST00000553837 AIF1P55008 147 aa12.35□□□□□ -0.43
SHMT2-207ENST00000553837 C21orf59P57076 290 aa12.35□□□□□ -0.43
SHMT2-207ENST00000553837 ANKDD1AQ495B1 522 aa12.35□□□□□ -0.43
SHMT2-207ENST00000553837 KCTD21Q4G0X4 260 aa12.35□□□□□ -0.43
SHMT2-207ENST00000553837 PM20D1Q6GTS8 502 aa12.35□□□□□ -0.43
SHMT2-207ENST00000553837 FAM171BQ6P995 826 aa12.35□□□□□ -0.43
SHMT2-207ENST00000553837 GET4Q7L5D6 327 aaPredicted RBP12.35□□□□□ -0.43
SHMT2-207ENST00000553837 OTOP3Q7RTS5 596 aa12.35□□□□□ -0.43
SHMT2-207ENST00000553837 CARM1Q86X55 608 aa12.35□□□□□ -0.43
SHMT2-207ENST00000553837 CLVS1Q8IUQ0 354 aaPredicted RBP12.35□□□□□ -0.43
SHMT2-207ENST00000553837 CNTD1Q8N815 330 aa12.35□□□□□ -0.43
SHMT2-207ENST00000553837 RP9Q8TA86 221 aaKnown RBP12.35□□□□□ -0.43
SHMT2-207ENST00000553837 ISOC1Q96CN7 298 aa12.35□□□□□ -0.43
SHMT2-207ENST00000553837 HDAC11Q96DB2 347 aa12.35□□□□□ -0.43
SHMT2-207ENST00000553837 FERMT1Q9BQL6 677 aa12.35□□□□□ -0.43
SHMT2-207ENST00000553837 NAT9Q9BTE0 207 aa12.35□□□□□ -0.43
SHMT2-207ENST00000553837 GBA3Q9H227 469 aa12.35□□□□□ -0.43
SHMT2-207ENST00000553837 COG4Q9H9E3 785 aa12.35□□□□□ -0.43
SHMT2-207ENST00000553837 CHRAC1Q9NRG0 131 aa12.35□□□□□ -0.43
SHMT2-207ENST00000553837 SNX15Q9NRS6 342 aa12.35□□□□□ -0.43
SHMT2-207ENST00000553837 PACSIN3Q9UKS6 424 aa12.35□□□□□ -0.43
SHMT2-207ENST00000553837 CARD8Q9Y2G2 431 aa12.35□□□□□ -0.43
SHMT2-207ENST00000553837 M0QZ92 97 aa12.34□□□□□ -0.43
SHMT2-207ENST00000553837 DUSP11O75319 330 aaKnown RBP12.34□□□□□ -0.43
SHMT2-207ENST00000553837 ESRRBO95718 433 aa12.34□□□□□ -0.43
SHMT2-207ENST00000553837 JCHAINP01591 159 aa12.34□□□□□ -0.43
SHMT2-207ENST00000553837 TFPTP0C1Z6 253 aa12.34□□□□□ -0.43
SHMT2-207ENST00000553837 RALBP11234 206 aa12.34□□□□□ -0.43
SHMT2-207ENST00000553837 TYK2P29597 1187 aa12.34□□□□□ -0.43
SHMT2-207ENST00000553837 GP5P40197 560 aa12.34□□□□□ -0.43
SHMT2-207ENST00000553837 IRF9Q00978 393 aa12.34□□□□□ -0.43
SHMT2-207ENST00000553837 TRIM32Q13049 653 aa12.34□□□□□ -0.43
SHMT2-207ENST00000553837 NAB1Q13506 487 aa12.34□□□□□ -0.43
SHMT2-207ENST00000553837 PPP2R5DQ14738 602 aa12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms